RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.91□□□□□ -0.34
LIG1-219ENST00000600055 GID4Q8IVV7 300 aa12.91□□□□□ -0.34
LIG1-219ENST00000600055 OR8J1Q8NGP2 316 aa12.91□□□□□ -0.34
LIG1-219ENST00000600055 ELMOD3Q96FG2 381 aa12.91□□□□□ -0.34
LIG1-219ENST00000600055 ZNF582Q96NG8 517 aaPredicted RBP12.91□□□□□ -0.34
LIG1-219ENST00000600055 ADGRL4Q9HBW9 690 aa12.91□□□□□ -0.34
LIG1-219ENST00000600055 ZNF319Q9P2F9 582 aa12.91□□□□□ -0.34
LIG1-219ENST00000600055 AASSQ9UDR5 926 aa12.91□□□□□ -0.34
LIG1-219ENST00000600055 CR1P17927 2039 aa12.9□□□□□ -0.34
LIG1-219ENST00000600055 LRP5LA4QPB2 252 aa12.9□□□□□ -0.34
LIG1-219ENST00000600055 WNT9BO14905 357 aa12.9□□□□□ -0.34
LIG1-219ENST00000600055 APOL3O95236 402 aa12.9□□□□□ -0.34
LIG1-219ENST00000600055 CD55P08174 381 aa12.9□□□□□ -0.34
LIG1-219ENST00000600055 ANPEPP15144 967 aa12.9□□□□□ -0.34
LIG1-219ENST00000600055 SELEP16581 610 aa12.9□□□□□ -0.34
LIG1-219ENST00000600055 HTR1FP30939 366 aa12.9□□□□□ -0.34
LIG1-219ENST00000600055 ELF3P78545 371 aaPredicted RBP12.9□□□□□ -0.34
LIG1-219ENST00000600055 TMEM249Q2WGJ8 235 aa12.9□□□□□ -0.34
LIG1-219ENST00000600055 LPCAT4Q643R3 524 aa12.9□□□□□ -0.34
LIG1-219ENST00000600055 RHOUQ7L0Q8 258 aa12.9□□□□□ -0.34
LIG1-219ENST00000600055 KRT77Q7Z794 578 aa12.9□□□□□ -0.34
LIG1-219ENST00000600055 SLC35F2Q8IXU6 374 aa12.9□□□□□ -0.34
LIG1-219ENST00000600055 ZNF540Q8NDQ6 660 aa12.9□□□□□ -0.34
LIG1-219ENST00000600055 OR10AD1Q8NGE0 317 aa12.9□□□□□ -0.34
LIG1-219ENST00000600055 OR51G2Q8NGK0 314 aa12.9□□□□□ -0.34
LIG1-219ENST00000600055 ITLN1Q8WWA0 313 aa12.9□□□□□ -0.34
LIG1-219ENST00000600055 DIRC2Q96SL1 478 aa12.9□□□□□ -0.34
LIG1-219ENST00000600055 SLC30A2Q9BRI3 323 aa12.9□□□□□ -0.34
LIG1-219ENST00000600055 REPIN1Q9BWE0 567 aaKnown RBP12.9□□□□□ -0.34
LIG1-219ENST00000600055 DCLRE1BQ9H816 532 aa12.9□□□□□ -0.34
LIG1-219ENST00000600055 IMPAD1Q9NX62 359 aa12.9□□□□□ -0.34
LIG1-219ENST00000600055 HAO2Q9NYQ3 351 aa12.9□□□□□ -0.34
LIG1-219ENST00000600055 LRP12Q9Y561 859 aa12.9□□□□□ -0.34
LIG1-219ENST00000600055 CD300LBA8K4G0 201 aa12.89□□□□□ -0.35
LIG1-219ENST00000600055 MAGEB4O15481 346 aaPredicted RBP12.89□□□□□ -0.35
LIG1-219ENST00000600055 MLNRO43193 412 aa12.89□□□□□ -0.35
LIG1-219ENST00000600055 PPIHO43447 177 aaKnown RBP12.89□□□□□ -0.35
LIG1-219ENST00000600055 ENTPD6O75354 484 aa12.89□□□□□ -0.35
LIG1-219ENST00000600055 HLA-DPB1P04440 258 aa12.89□□□□□ -0.35
LIG1-219ENST00000600055 SBK2P0C263 348 aa12.89□□□□□ -0.35
LIG1-219ENST00000600055 GPR6P46095 362 aaPredicted RBP12.89□□□□□ -0.35
LIG1-219ENST00000600055 LRRC36Q1X8D7 754 aa12.89□□□□□ -0.35
LIG1-219ENST00000600055 GALNT4Q8N4A0 578 aa12.89□□□□□ -0.35
LIG1-219ENST00000600055 OR13G1Q8NGZ3 307 aa12.89□□□□□ -0.35
LIG1-219ENST00000600055 SPRYD4Q8WW59 207 aaPredicted RBP12.89□□□□□ -0.35
LIG1-219ENST00000600055 CCL17Q92583 94 aa12.89□□□□□ -0.35
LIG1-219ENST00000600055 SGK3Q96BR1 496 aa12.89□□□□□ -0.35
LIG1-219ENST00000600055 PGAM5Q96HS1 289 aa12.89□□□□□ -0.35
LIG1-219ENST00000600055 EGLN1Q9GZT9 426 aa12.89□□□□□ -0.35
LIG1-219ENST00000600055 NARFLQ9H6Q4 476 aa12.89□□□□□ -0.35
LIG1-219ENST00000600055 TMEM100Q9NV29 134 aa12.89□□□□□ -0.35
LIG1-219ENST00000600055 DCAF16Q9NXF7 216 aa12.89□□□□□ -0.35
LIG1-219ENST00000600055 WARS2Q9UGM6 360 aaKnown RBP12.89□□□□□ -0.35
LIG1-219ENST00000600055 GMPPBQ9Y5P6 360 aa12.89□□□□□ -0.35
LIG1-219ENST00000600055 CHD3Q12873 2000 aaKnown RBP12.89□□□□□ -0.35
LIG1-219ENST00000600055 IGHV3-64DA0A0J9YX35 117 aa12.88□□□□□ -0.35
LIG1-219ENST00000600055 GGT3PA6NGU5 568 aa12.88□□□□□ -0.35
LIG1-219ENST00000600055 F5H5P2 479 aa12.88□□□□□ -0.35
LIG1-219ENST00000600055 DLGAP1O14490 977 aa12.88□□□□□ -0.35
LIG1-219ENST00000600055 XRCC2O43543 280 aa12.88□□□□□ -0.35
LIG1-219ENST00000600055 APOC1P02654 83 aa12.88□□□□□ -0.35
LIG1-219ENST00000600055 TACSTD2P09758 323 aa12.88□□□□□ -0.35
LIG1-219ENST00000600055 IGHV4-31P0DP07 118 aa12.88□□□□□ -0.35
LIG1-219ENST00000600055 TNFSF4P23510 183 aa12.88□□□□□ -0.35
LIG1-219ENST00000600055 IL2RGP31785 369 aa12.88□□□□□ -0.35
LIG1-219ENST00000600055 TMEM33P57088 247 aa12.88□□□□□ -0.35
LIG1-219ENST00000600055 CXCR4P61073 352 aa12.88□□□□□ -0.35
LIG1-219ENST00000600055 TIGD6Q17RP2 521 aa12.88□□□□□ -0.35
LIG1-219ENST00000600055 GFOD2Q3B7J2 385 aa12.88□□□□□ -0.35
LIG1-219ENST00000600055 AVPI1Q5T686 147 aa12.88□□□□□ -0.35
LIG1-219ENST00000600055 SSX6Q7RTT6 188 aa12.88□□□□□ -0.35
LIG1-219ENST00000600055 TRUB1Q8WWH5 349 aaKnown RBP12.88□□□□□ -0.35
LIG1-219ENST00000600055 SPSB4Q96A44 273 aa12.88□□□□□ -0.35
LIG1-219ENST00000600055 REEP6Q96HR9 211 aa12.88□□□□□ -0.35
LIG1-219ENST00000600055 OR2V2Q96R30 315 aa12.88□□□□□ -0.35
LIG1-219ENST00000600055 OR8B4Q96RC9 309 aa12.88□□□□□ -0.35
LIG1-219ENST00000600055 TBX5Q99593 518 aa12.88□□□□□ -0.35
LIG1-219ENST00000600055 APOL4Q9BPW4 351 aa12.88□□□□□ -0.35
LIG1-219ENST00000600055 SOX7Q9BT81 388 aa12.88□□□□□ -0.35
LIG1-219ENST00000600055 OR10A2Q9H208 303 aa12.88□□□□□ -0.35
LIG1-219ENST00000600055 FAM118AQ9NWS6 357 aa12.88□□□□□ -0.35
LIG1-219ENST00000600055 CLN6Q9NWW5 311 aa12.88□□□□□ -0.35
LIG1-219ENST00000600055 IKZF2Q9UKS7 526 aa12.88□□□□□ -0.35
LIG1-219ENST00000600055 TMEM14AQ9Y6G1 99 aa12.88□□□□□ -0.35
LIG1-219ENST00000600055 LOC100130705A0A1B0GUX0 176 aa12.87□□□□□ -0.35
LIG1-219ENST00000600055 ZNF670-ZNF695F2Z2N8 137 aa12.87□□□□□ -0.35
LIG1-219ENST00000600055 CA6P23280 308 aa12.87□□□□□ -0.35
LIG1-219ENST00000600055 PEX2P28328 305 aa12.87□□□□□ -0.35
LIG1-219ENST00000600055 PSMA6P60900 246 aaKnown RBP12.87□□□□□ -0.35
LIG1-219ENST00000600055 SNRPGP62308 76 aaKnown RBP12.87□□□□□ -0.35
LIG1-219ENST00000600055 FAM3AP98173 230 aa12.87□□□□□ -0.35
LIG1-219ENST00000600055 ROM1Q03395 351 aa12.87□□□□□ -0.35
LIG1-219ENST00000600055 MVKQ03426 396 aa12.87□□□□□ -0.35
LIG1-219ENST00000600055 HFEQ30201 348 aa12.87□□□□□ -0.35
LIG1-219ENST00000600055 KCTD18Q6PI47 426 aaPredicted RBP12.87□□□□□ -0.35
LIG1-219ENST00000600055 ZNF322Q6U7Q0 402 aaPredicted RBP12.87□□□□□ -0.35
LIG1-219ENST00000600055 ENTHD1Q8IYW4 607 aa12.87□□□□□ -0.35
LIG1-219ENST00000600055 ZNF679Q8IYX0 411 aa12.87□□□□□ -0.35
LIG1-219ENST00000600055 OR8B12Q8NGG6 310 aa12.87□□□□□ -0.35
LIG1-219ENST00000600055 OR56B2PQ8NGI1 322 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms