RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 GZMKP49863 264 aa11.74□□□□□ -0.53
UPF1-205ENST00000598209 ALDH3A2P51648 485 aa11.74□□□□□ -0.53
UPF1-205ENST00000598209 HCCSP53701 268 aa11.74□□□□□ -0.53
UPF1-205ENST00000598209 ZNF121P58317 390 aaPredicted RBP11.74□□□□□ -0.53
UPF1-205ENST00000598209 MEPCEQ7L2J0 689 aaKnown RBP11.74□□□□□ -0.53
UPF1-205ENST00000598209 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.74□□□□□ -0.53
UPF1-205ENST00000598209 GID4Q8IVV7 300 aa11.74□□□□□ -0.53
UPF1-205ENST00000598209 CBR4Q8N4T8 237 aa11.74□□□□□ -0.53
UPF1-205ENST00000598209 OR10AD1Q8NGE0 317 aa11.74□□□□□ -0.53
UPF1-205ENST00000598209 ITLN1Q8WWA0 313 aa11.74□□□□□ -0.53
UPF1-205ENST00000598209 CCL17Q92583 94 aa11.74□□□□□ -0.53
UPF1-205ENST00000598209 SLC30A2Q9BRI3 323 aa11.74□□□□□ -0.53
UPF1-205ENST00000598209 C9orf16Q9BUW7 83 aa11.74□□□□□ -0.53
UPF1-205ENST00000598209 REPIN1Q9BWE0 567 aaKnown RBP11.74□□□□□ -0.53
UPF1-205ENST00000598209 NARFLQ9H6Q4 476 aa11.74□□□□□ -0.53
UPF1-205ENST00000598209 IL19Q9UHD0 177 aa11.74□□□□□ -0.53
UPF1-205ENST00000598209 NSD1Q96L73 2696 aaPredicted RBP11.74□□□□□ -0.53
UPF1-205ENST00000598209 GGT3PA6NGU5 568 aa11.73□□□□□ -0.53
UPF1-205ENST00000598209 SLC22A31A6NKX4 558 aa11.73□□□□□ -0.53
UPF1-205ENST00000598209 CD300LBA8K4G0 201 aa11.73□□□□□ -0.53
UPF1-205ENST00000598209 CLDN25C9JDP6 229 aa11.73□□□□□ -0.53
UPF1-205ENST00000598209 H0YL77 283 aa11.73□□□□□ -0.53
UPF1-205ENST00000598209 WNT9BO14905 357 aa11.73□□□□□ -0.53
UPF1-205ENST00000598209 MLNRO43193 412 aa11.73□□□□□ -0.53
UPF1-205ENST00000598209 TBX1O43435 398 aa11.73□□□□□ -0.53
UPF1-205ENST00000598209 XRCC2O43543 280 aa11.73□□□□□ -0.53
UPF1-205ENST00000598209 BAG2O95816 211 aa11.73□□□□□ -0.53
UPF1-205ENST00000598209 HOXB4P17483 251 aaPredicted RBP11.73□□□□□ -0.53
UPF1-205ENST00000598209 TNFRSF1AP19438 455 aa11.73□□□□□ -0.53
UPF1-205ENST00000598209 IL2RGP31785 369 aa11.73□□□□□ -0.53
UPF1-205ENST00000598209 RAD23AP54725 363 aa11.73□□□□□ -0.53
UPF1-205ENST00000598209 MVKQ03426 396 aa11.73□□□□□ -0.53
UPF1-205ENST00000598209 ZIK1Q3SY52 487 aaPredicted RBP11.73□□□□□ -0.53
UPF1-205ENST00000598209 C6orf52Q5T4I8 152 aa11.73□□□□□ -0.53
UPF1-205ENST00000598209 AVPI1Q5T686 147 aa11.73□□□□□ -0.53
UPF1-205ENST00000598209 LRRN1Q6UXK5 716 aa11.73□□□□□ -0.53
UPF1-205ENST00000598209 FAM57BQ71RH2 274 aa11.73□□□□□ -0.53
UPF1-205ENST00000598209 PRSS45Q7RTY3 260 aa11.73□□□□□ -0.53
UPF1-205ENST00000598209 KRT77Q7Z794 578 aa11.73□□□□□ -0.53
UPF1-205ENST00000598209 CLDND2Q8NHS1 167 aa11.73□□□□□ -0.53
UPF1-205ENST00000598209 SPRYD4Q8WW59 207 aaPredicted RBP11.73□□□□□ -0.53
UPF1-205ENST00000598209 HPS1Q92902 700 aa11.73□□□□□ -0.53
UPF1-205ENST00000598209 STMN2Q93045 179 aa11.73□□□□□ -0.53
UPF1-205ENST00000598209 TIMD4Q96H15 378 aa11.73□□□□□ -0.53
UPF1-205ENST00000598209 OR2V2Q96R30 315 aa11.73□□□□□ -0.53
UPF1-205ENST00000598209 CNN2Q99439 309 aaKnown RBP11.73□□□□□ -0.53
UPF1-205ENST00000598209 SOX7Q9BT81 388 aa11.73□□□□□ -0.53
UPF1-205ENST00000598209 SETD2Q9BYW2 2564 aaPredicted RBP11.73□□□□□ -0.53
UPF1-205ENST00000598209 SP140LQ9H930 580 aa11.73□□□□□ -0.53
UPF1-205ENST00000598209 BRD7Q9NPI1 651 aa11.73□□□□□ -0.53
UPF1-205ENST00000598209 TMEM100Q9NV29 134 aa11.73□□□□□ -0.53
UPF1-205ENST00000598209 SONP18583 2426 aaKnown RBP11.72□□□□□ -0.53
UPF1-205ENST00000598209 A0A1B0GWJ7 208 aa11.72□□□□□ -0.53
UPF1-205ENST00000598209 A8MV72 311 aaPredicted RBP11.72□□□□□ -0.53
UPF1-205ENST00000598209 CDC42P60953 191 aa11.72□□□□□ -0.53
UPF1-205ENST00000598209 SLC3A1Q07837 685 aa11.72□□□□□ -0.53
UPF1-205ENST00000598209 HNRNPA0Q13151 305 aaKnown RBP11.72□□□□□ -0.53
UPF1-205ENST00000598209 TIGD6Q17RP2 521 aa11.72□□□□□ -0.53
UPF1-205ENST00000598209 OR8J1Q8NGP2 316 aa11.72□□□□□ -0.53
UPF1-205ENST00000598209 FAM81AQ8TBF8 368 aa11.72□□□□□ -0.53
UPF1-205ENST00000598209 RAB1CQ92928 201 aa11.72□□□□□ -0.53
UPF1-205ENST00000598209 SPSB4Q96A44 273 aa11.72□□□□□ -0.53
UPF1-205ENST00000598209 MSI2Q96DH6 328 aaKnown RBP11.72□□□□□ -0.53
UPF1-205ENST00000598209 PGAM5Q96HS1 289 aa11.72□□□□□ -0.53
UPF1-205ENST00000598209 MEGF10Q96KG7 1140 aa11.72□□□□□ -0.53
UPF1-205ENST00000598209 OR10A2Q9H208 303 aa11.72□□□□□ -0.53
UPF1-205ENST00000598209 OPA3Q9H6K4 179 aa11.72□□□□□ -0.53
UPF1-205ENST00000598209 NIPAL2Q9H841 368 aa11.72□□□□□ -0.53
UPF1-205ENST00000598209 ADGRL4Q9HBW9 690 aa11.72□□□□□ -0.53
UPF1-205ENST00000598209 COPS3Q9UNS2 423 aa11.72□□□□□ -0.53
UPF1-205ENST00000598209 WIPI2Q9Y4P8 454 aa11.72□□□□□ -0.53
UPF1-205ENST00000598209 LRP12Q9Y561 859 aa11.72□□□□□ -0.53
UPF1-205ENST00000598209 TMEM14AQ9Y6G1 99 aa11.72□□□□□ -0.53
UPF1-205ENST00000598209 ZFHX3Q15911 3703 aa11.72□□□□□ -0.53
UPF1-205ENST00000598209 LOC100289279A0A1B0GTE1 492 aa11.71□□□□□ -0.53
UPF1-205ENST00000598209 F5H5P2 479 aa11.71□□□□□ -0.53
UPF1-205ENST00000598209 PSMD9O00233 223 aa11.71□□□□□ -0.53
UPF1-205ENST00000598209 HLA-DPB1P04440 258 aa11.71□□□□□ -0.53
UPF1-205ENST00000598209 SRP9P49458 86 aaKnown RBP11.71□□□□□ -0.53
UPF1-205ENST00000598209 PSMA6P60900 246 aaKnown RBP11.71□□□□□ -0.53
UPF1-205ENST00000598209 KCTD18Q6PI47 426 aaPredicted RBP11.71□□□□□ -0.53
UPF1-205ENST00000598209 ZBTB49Q6ZSB9 765 aa11.71□□□□□ -0.53
UPF1-205ENST00000598209 SLC35F2Q8IXU6 374 aa11.71□□□□□ -0.53
UPF1-205ENST00000598209 OR56B2PQ8NGI1 322 aa11.71□□□□□ -0.53
UPF1-205ENST00000598209 OR52H1Q8NGJ2 320 aa11.71□□□□□ -0.53
UPF1-205ENST00000598209 ASB17Q8WXJ9 295 aa11.71□□□□□ -0.53
UPF1-205ENST00000598209 EME1Q96AY2 570 aa11.71□□□□□ -0.53
UPF1-205ENST00000598209 SGK3Q96BR1 496 aa11.71□□□□□ -0.53
UPF1-205ENST00000598209 REEP6Q96HR9 211 aa11.71□□□□□ -0.53
UPF1-205ENST00000598209 HRASLS5Q96KN8 279 aa11.71□□□□□ -0.53
UPF1-205ENST00000598209 SLC29A1Q99808 456 aa11.71□□□□□ -0.53
UPF1-205ENST00000598209 TTTY10Q9BZA0 68 aa11.71□□□□□ -0.53
UPF1-205ENST00000598209 TMEM106BQ9NUM4 274 aa11.71□□□□□ -0.53
UPF1-205ENST00000598209 IMPAD1Q9NX62 359 aa11.71□□□□□ -0.53
UPF1-205ENST00000598209 DCAF16Q9NXF7 216 aa11.71□□□□□ -0.53
UPF1-205ENST00000598209 HAO2Q9NYQ3 351 aa11.71□□□□□ -0.53
UPF1-205ENST00000598209 ZNF319Q9P2F9 582 aa11.71□□□□□ -0.53
UPF1-205ENST00000598209 WARS2Q9UGM6 360 aaKnown RBP11.71□□□□□ -0.53
UPF1-205ENST00000598209 PPP1R3CQ9UQK1 317 aa11.71□□□□□ -0.53
UPF1-205ENST00000598209 IGHV3-64DA0A0J9YX35 117 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms