RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 LCN2P80188 198 aa12.86□□□□□ -0.35
TRIM28-203ENST00000593582 ZNF92Q03936 586 aa12.86□□□□□ -0.35
TRIM28-203ENST00000593582 BNIP1Q12981 228 aa12.86□□□□□ -0.35
TRIM28-203ENST00000593582 ZMYND11Q15326 602 aa12.86□□□□□ -0.35
TRIM28-203ENST00000593582 LINC01590Q5TEZ4 76 aa12.86□□□□□ -0.35
TRIM28-203ENST00000593582 DCAF12L2Q5VW00 463 aa12.86□□□□□ -0.35
TRIM28-203ENST00000593582 SPATC1Q76KD6 591 aa12.86□□□□□ -0.35
TRIM28-203ENST00000593582 DPY19L4Q7Z388 723 aa12.86□□□□□ -0.35
TRIM28-203ENST00000593582 ERI1Q8IV48 349 aaKnown RBP12.86□□□□□ -0.35
TRIM28-203ENST00000593582 HS3ST5Q8IZT8 346 aa12.86□□□□□ -0.35
TRIM28-203ENST00000593582 MUC20Q8N307 709 aaPredicted RBP12.86□□□□□ -0.35
TRIM28-203ENST00000593582 PAPD5Q8NDF8 572 aaKnown RBP12.86□□□□□ -0.35
TRIM28-203ENST00000593582 CADM1Q9BY67 442 aaKnown RBP12.86□□□□□ -0.35
TRIM28-203ENST00000593582 SLC22A4Q9H015 551 aa12.86□□□□□ -0.35
TRIM28-203ENST00000593582 OR51V1Q9H2C8 321 aa12.86□□□□□ -0.35
TRIM28-203ENST00000593582 TANC2Q9HCD6 1990 aa12.85□□□□□ -0.35
TRIM28-203ENST00000593582 IGHV3-64DA0A0J9YX35 117 aa12.85□□□□□ -0.35
TRIM28-203ENST00000593582 GGT3PA6NGU5 568 aa12.85□□□□□ -0.35
TRIM28-203ENST00000593582 CD300LBA8K4G0 201 aa12.85□□□□□ -0.35
TRIM28-203ENST00000593582 PRR23D1E9PI22 279 aaPredicted RBP12.85□□□□□ -0.35
TRIM28-203ENST00000593582 FOXH1O75593 365 aa12.85□□□□□ -0.35
TRIM28-203ENST00000593582 GLCEO94923 617 aa12.85□□□□□ -0.35
TRIM28-203ENST00000593582 PRR23D2P0DMB1 279 aaPredicted RBP12.85□□□□□ -0.35
TRIM28-203ENST00000593582 PRKACGP22612 351 aa12.85□□□□□ -0.35
TRIM28-203ENST00000593582 HSD11B1P28845 292 aa12.85□□□□□ -0.35
TRIM28-203ENST00000593582 EIF2B1Q14232 305 aaKnown RBP12.85□□□□□ -0.35
TRIM28-203ENST00000593582 GLYATL3Q5SZD4 288 aa12.85□□□□□ -0.35
TRIM28-203ENST00000593582 PLBD1Q6P4A8 553 aa12.85□□□□□ -0.35
TRIM28-203ENST00000593582 MOGAT3Q86VF5 341 aa12.85□□□□□ -0.35
TRIM28-203ENST00000593582 C1orf87Q8N0U7 546 aa12.85□□□□□ -0.35
TRIM28-203ENST00000593582 CELF2-AS1Q8N7Q2 184 aa12.85□□□□□ -0.35
TRIM28-203ENST00000593582 OR6N2Q8NGY6 317 aa12.85□□□□□ -0.35
TRIM28-203ENST00000593582 OR2AE1Q8NHA4 323 aa12.85□□□□□ -0.35
TRIM28-203ENST00000593582 ZNF420Q8TAQ5 688 aaPredicted RBP12.85□□□□□ -0.35
TRIM28-203ENST00000593582 REPIN1Q9BWE0 567 aaKnown RBP12.85□□□□□ -0.35
TRIM28-203ENST00000593582 TOR3AQ9H497 397 aa12.85□□□□□ -0.35
TRIM28-203ENST00000593582 OCEL1Q9H607 264 aa12.85□□□□□ -0.35
TRIM28-203ENST00000593582 OPA3Q9H6K4 179 aa12.85□□□□□ -0.35
TRIM28-203ENST00000593582 PATZ1Q9HBE1 687 aaKnown RBP12.85□□□□□ -0.35
TRIM28-203ENST00000593582 KIF17Q9P2E2 1029 aa12.85□□□□□ -0.35
TRIM28-203ENST00000593582 N6AMT1Q9Y5N5 214 aa12.85□□□□□ -0.35
TRIM28-203ENST00000593582 PPIAL4EA0A075B759 164 aa12.84□□□□□ -0.35
TRIM28-203ENST00000593582 LOC105371242A0A075B767 164 aa12.84□□□□□ -0.35
TRIM28-203ENST00000593582 PPIAL4CA0A0B4J2A2 164 aa12.84□□□□□ -0.35
TRIM28-203ENST00000593582 PPIAL4DF5H284 164 aa12.84□□□□□ -0.35
TRIM28-203ENST00000593582 ATP5HO75947 161 aa12.84□□□□□ -0.35
TRIM28-203ENST00000593582 CYB5R3P00387 301 aaPredicted RBP12.84□□□□□ -0.35
TRIM28-203ENST00000593582 APOC1P02654 83 aa12.84□□□□□ -0.35
TRIM28-203ENST00000593582 PPIAL4FP0DN26 164 aa12.84□□□□□ -0.35
TRIM28-203ENST00000593582 SLC2A1P11166 492 aa12.84□□□□□ -0.35
TRIM28-203ENST00000593582 IRF2P14316 349 aa12.84□□□□□ -0.35
TRIM28-203ENST00000593582 CA6P23280 308 aa12.84□□□□□ -0.35
TRIM28-203ENST00000593582 GATA4P43694 442 aa12.84□□□□□ -0.35
TRIM28-203ENST00000593582 OR8G1Q15617 311 aa12.84□□□□□ -0.35
TRIM28-203ENST00000593582 ZNF181Q2M3W8 571 aa12.84□□□□□ -0.35
TRIM28-203ENST00000593582 KRTAP24-1Q3LI83 254 aa12.84□□□□□ -0.35
TRIM28-203ENST00000593582 SHFQ7M4L6 423 aa12.84□□□□□ -0.35
TRIM28-203ENST00000593582 DNAJC9Q8WXX5 260 aa12.84□□□□□ -0.35
TRIM28-203ENST00000593582 ERGIC1Q969X5 290 aa12.84□□□□□ -0.35
TRIM28-203ENST00000593582 NRBF2Q96F24 287 aa12.84□□□□□ -0.35
TRIM28-203ENST00000593582 PLEKHA8Q96JA3 519 aa12.84□□□□□ -0.35
TRIM28-203ENST00000593582 ABHD6Q9BV23 337 aa12.84□□□□□ -0.35
TRIM28-203ENST00000593582 TMPRSS13Q9BYE2 586 aa12.84□□□□□ -0.35
TRIM28-203ENST00000593582 SP140LQ9H930 580 aa12.84□□□□□ -0.35
TRIM28-203ENST00000593582 MARCH7Q9H992 704 aa12.84□□□□□ -0.35
TRIM28-203ENST00000593582 STAB1Q9NY15 2570 aa12.84□□□□□ -0.35
TRIM28-203ENST00000593582 DYSFO75923 2080 aa12.84□□□□□ -0.35
TRIM28-203ENST00000593582 PRODHO43272 600 aa12.83□□□□□ -0.36
TRIM28-203ENST00000593582 XRCC2O43543 280 aa12.83□□□□□ -0.36
TRIM28-203ENST00000593582 GMDSO60547 372 aa12.83□□□□□ -0.36
TRIM28-203ENST00000593582 TIPRLO75663 272 aa12.83□□□□□ -0.36
TRIM28-203ENST00000593582 ANXA2P07355 339 aaKnown RBP12.83□□□□□ -0.36
TRIM28-203ENST00000593582 ZFP36P26651 326 aaKnown RBP12.83□□□□□ -0.36
TRIM28-203ENST00000593582 CD200P41217 278 aa12.83□□□□□ -0.36
TRIM28-203ENST00000593582 CX3CR1P49238 355 aa12.83□□□□□ -0.36
TRIM28-203ENST00000593582 CDK5Q00535 292 aa12.83□□□□□ -0.36
TRIM28-203ENST00000593582 SRSF2Q01130 221 aaKnown RBP12.83□□□□□ -0.36
TRIM28-203ENST00000593582 MAB21L1Q13394 359 aa12.83□□□□□ -0.36
TRIM28-203ENST00000593582 KLHL12Q53G59 568 aa12.83□□□□□ -0.36
TRIM28-203ENST00000593582 ESCO2Q56NI9 601 aa12.83□□□□□ -0.36
TRIM28-203ENST00000593582 C1orf229Q6ZS94 237 aaPredicted RBP12.83□□□□□ -0.36
TRIM28-203ENST00000593582 RHOUQ7L0Q8 258 aa12.83□□□□□ -0.36
TRIM28-203ENST00000593582 TIGD4Q8IY51 512 aa12.83□□□□□ -0.36
TRIM28-203ENST00000593582 OR11L1Q8NGX0 322 aa12.83□□□□□ -0.36
TRIM28-203ENST00000593582 RNF133Q8WVZ7 376 aa12.83□□□□□ -0.36
TRIM28-203ENST00000593582 ZMYND19Q96E35 227 aaPredicted RBP12.83□□□□□ -0.36
TRIM28-203ENST00000593582 ADAT1Q9BUB4 502 aaKnown RBP12.83□□□□□ -0.36
TRIM28-203ENST00000593582 MMADHCQ9H3L0 296 aaPredicted RBP12.83□□□□□ -0.36
TRIM28-203ENST00000593582 C7orf69Q9H7B7 122 aa12.83□□□□□ -0.36
TRIM28-203ENST00000593582 PAPOLBQ9NRJ5 636 aaKnown RBP12.83□□□□□ -0.36
TRIM28-203ENST00000593582 MRPL15Q9P015 296 aaKnown RBP12.83□□□□□ -0.36
TRIM28-203ENST00000593582 C5orf63A6NC05 138 aa12.82□□□□□ -0.36
TRIM28-203ENST00000593582 CEACAM18A8MTB9 384 aa12.82□□□□□ -0.36
TRIM28-203ENST00000593582 TBX1O43435 398 aa12.82□□□□□ -0.36
TRIM28-203ENST00000593582 ZNF205O95201 554 aa12.82□□□□□ -0.36
TRIM28-203ENST00000593582 FSTL3O95633 263 aa12.82□□□□□ -0.36
TRIM28-203ENST00000593582 AVPP01185 164 aa12.82□□□□□ -0.36
TRIM28-203ENST00000593582 CPT2P23786 658 aa12.82□□□□□ -0.36
TRIM28-203ENST00000593582 TIGD6Q17RP2 521 aa12.82□□□□□ -0.36
TRIM28-203ENST00000593582 C1QL2Q7Z5L3 287 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms