RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 DRAM2Q6UX65 266 aa9.06□□□□□ -0.96
VPS39-208ENST00000564994 MRPL21Q7Z2W9 205 aaKnown RBP9.06□□□□□ -0.96
VPS39-208ENST00000564994 KLBQ86Z14 1044 aa9.06□□□□□ -0.96
VPS39-208ENST00000564994 MUC20Q8N307 709 aaPredicted RBP9.06□□□□□ -0.96
VPS39-208ENST00000564994 ZDHHC22Q8N966 263 aa9.06□□□□□ -0.96
VPS39-208ENST00000564994 CCDC197Q8NCU1 140 aa9.06□□□□□ -0.96
VPS39-208ENST00000564994 C19orf18Q8NEA5 215 aa9.06□□□□□ -0.96
VPS39-208ENST00000564994 OR2T33Q8NG76 320 aa9.06□□□□□ -0.96
VPS39-208ENST00000564994 OR10G2Q8NGC3 310 aa9.06□□□□□ -0.96
VPS39-208ENST00000564994 POP5Q969H6 163 aaKnown RBP9.06□□□□□ -0.96
VPS39-208ENST00000564994 SPTSSAQ969W0 71 aa9.06□□□□□ -0.96
VPS39-208ENST00000564994 CCDC124Q96CT7 223 aaKnown RBP9.06□□□□□ -0.96
VPS39-208ENST00000564994 SLAMF6Q96DU3 332 aa9.06□□□□□ -0.96
VPS39-208ENST00000564994 ASB9Q96DX5 294 aa9.06□□□□□ -0.96
VPS39-208ENST00000564994 TMEM246Q9BRR3 403 aa9.06□□□□□ -0.96
VPS39-208ENST00000564994 PRPF19Q9UMS4 504 aaKnown RBP9.06□□□□□ -0.96
VPS39-208ENST00000564994 FAM183AA6NL82 134 aa9.05□□□□□ -0.96
VPS39-208ENST00000564994 ZNF593O00488 134 aaPredicted RBP9.05□□□□□ -0.96
VPS39-208ENST00000564994 FAM20BO75063 409 aa9.05□□□□□ -0.96
VPS39-208ENST00000564994 FSTL3O95633 263 aa9.05□□□□□ -0.96
VPS39-208ENST00000564994 RAP2AP10114 183 aa9.05□□□□□ -0.96
VPS39-208ENST00000564994 SLC2A1P11166 492 aa9.05□□□□□ -0.96
VPS39-208ENST00000564994 RPS2P15880 293 aaKnown RBP9.05□□□□□ -0.96
VPS39-208ENST00000564994 CA6P23280 308 aa9.05□□□□□ -0.96
VPS39-208ENST00000564994 FMO3P31513 532 aa9.05□□□□□ -0.96
VPS39-208ENST00000564994 CD80P33681 288 aa9.05□□□□□ -0.96
VPS39-208ENST00000564994 PRKXP51817 358 aa9.05□□□□□ -0.96
VPS39-208ENST00000564994 PAX8Q06710 450 aa9.05□□□□□ -0.96
VPS39-208ENST00000564994 ESCO2Q56NI9 601 aa9.05□□□□□ -0.96
VPS39-208ENST00000564994 TEX30Q5JUR7 227 aa9.05□□□□□ -0.96
VPS39-208ENST00000564994 LYPD2Q6UXB3 125 aa9.05□□□□□ -0.96
VPS39-208ENST00000564994 CD300LDQ6UXZ3 194 aa9.05□□□□□ -0.96
VPS39-208ENST00000564994 TMEM179BQ7Z7N9 219 aa9.05□□□□□ -0.96
VPS39-208ENST00000564994 ADGRG5Q8IZF4 528 aa9.05□□□□□ -0.96
VPS39-208ENST00000564994 BCL6BQ8N143 479 aaPredicted RBP9.05□□□□□ -0.96
VPS39-208ENST00000564994 BPIFB2Q8N4F0 458 aa9.05□□□□□ -0.96
VPS39-208ENST00000564994 IQCF1Q8N6M8 205 aa9.05□□□□□ -0.96
VPS39-208ENST00000564994 CELF2-AS1Q8N7Q2 184 aa9.05□□□□□ -0.96
VPS39-208ENST00000564994 OR6K6Q8NGW6 343 aa9.05□□□□□ -0.96
VPS39-208ENST00000564994 Q8TCH9 128 aa9.05□□□□□ -0.96
VPS39-208ENST00000564994 FAM216AQ8WUB2 273 aa9.05□□□□□ -0.96
VPS39-208ENST00000564994 SPRYD4Q8WW59 207 aaPredicted RBP9.05□□□□□ -0.96
VPS39-208ENST00000564994 DACT3Q96B18 629 aaPredicted RBP9.05□□□□□ -0.96
VPS39-208ENST00000564994 FEVQ99581 238 aa9.05□□□□□ -0.96
VPS39-208ENST00000564994 KCNJ15Q99712 375 aa9.05□□□□□ -0.96
VPS39-208ENST00000564994 COPS4Q9BT78 406 aa9.05□□□□□ -0.96
VPS39-208ENST00000564994 THTPAQ9BU02 230 aa9.05□□□□□ -0.96
VPS39-208ENST00000564994 CHID1Q9BWS9 393 aa9.05□□□□□ -0.96
VPS39-208ENST00000564994 SSBP3Q9BWW4 388 aaPredicted RBP9.05□□□□□ -0.96
VPS39-208ENST00000564994 SUCNR1Q9BXA5 334 aa9.05□□□□□ -0.96
VPS39-208ENST00000564994 C1orf21Q9H246 121 aa9.05□□□□□ -0.96
VPS39-208ENST00000564994 MED20Q9H944 212 aa9.05□□□□□ -0.96
VPS39-208ENST00000564994 CMC2Q9NRP2 79 aa9.05□□□□□ -0.96
VPS39-208ENST00000564994 CENPMQ9NSP4 180 aa9.05□□□□□ -0.96
VPS39-208ENST00000564994 UFSP2Q9NUQ7 469 aa9.05□□□□□ -0.96
VPS39-208ENST00000564994 ZNF69Q9UC07 566 aa9.05□□□□□ -0.96
VPS39-208ENST00000564994 BAIAP2Q9UQB8 552 aa9.05□□□□□ -0.96
VPS39-208ENST00000564994 LRCH1Q9Y2L9 728 aa9.05□□□□□ -0.96
VPS39-208ENST00000564994 AUP1Q9Y679 476 aa9.05□□□□□ -0.96
VPS39-208ENST00000564994 DHRS12A0PJE2 317 aa9.04□□□□□ -0.96
VPS39-208ENST00000564994 TMEM89A2RUT3 159 aa9.04□□□□□ -0.96
VPS39-208ENST00000564994 LRRC30A6NM36 301 aa9.04□□□□□ -0.96
VPS39-208ENST00000564994 TRIM77I1YAP6 450 aa9.04□□□□□ -0.96
VPS39-208ENST00000564994 PTBP3O95758 552 aaKnown RBP9.04□□□□□ -0.96
VPS39-208ENST00000564994 CFPP27918 469 aa9.04□□□□□ -0.96
VPS39-208ENST00000564994 COMPP49747 757 aaPredicted RBP9.04□□□□□ -0.96
VPS39-208ENST00000564994 OR8G1Q15617 311 aa9.04□□□□□ -0.96
VPS39-208ENST00000564994 ARMCX4Q5H9R4 360 aa9.04□□□□□ -0.96
VPS39-208ENST00000564994 C12orf54Q6X4T0 127 aa9.04□□□□□ -0.96
VPS39-208ENST00000564994 SPATC1Q76KD6 591 aa9.04□□□□□ -0.96
VPS39-208ENST00000564994 C1orf87Q8N0U7 546 aa9.04□□□□□ -0.96
VPS39-208ENST00000564994 GIPC3Q8TF64 312 aa9.04□□□□□ -0.96
VPS39-208ENST00000564994 NEIL1Q96FI4 390 aaPredicted RBP9.04□□□□□ -0.96
VPS39-208ENST00000564994 LRGUKQ96M69 825 aa9.04□□□□□ -0.96
VPS39-208ENST00000564994 JMJD8Q96S16 334 aa9.04□□□□□ -0.96
VPS39-208ENST00000564994 AMELYQ99218 206 aa9.04□□□□□ -0.96
VPS39-208ENST00000564994 MRI1Q9BV20 369 aa9.04□□□□□ -0.96
VPS39-208ENST00000564994 MIOXQ9UGB7 285 aa9.04□□□□□ -0.96
VPS39-208ENST00000564994 OR5V1Q9UGF6 321 aa9.04□□□□□ -0.96
VPS39-208ENST00000564994 NUP50Q9UKX7 468 aa9.04□□□□□ -0.96
VPS39-208ENST00000564994 PPIAL4AQ9Y536 164 aa9.04□□□□□ -0.96
VPS39-208ENST00000564994 N6AMT1Q9Y5N5 214 aa9.04□□□□□ -0.96
VPS39-208ENST00000564994 IGHV2-70DA0A0C4DH43 119 aa9.03□□□□□ -0.96
VPS39-208ENST00000564994 GGT3PA6NGU5 568 aa9.03□□□□□ -0.96
VPS39-208ENST00000564994 RIIAD1A6NNX1 92 aa9.03□□□□□ -0.96
VPS39-208ENST00000564994 ZNF878C9JN71 531 aa9.03□□□□□ -0.96
VPS39-208ENST00000564994 CST1P01037 141 aa9.03□□□□□ -0.96
VPS39-208ENST00000564994 IFNGP01579 166 aa9.03□□□□□ -0.96
VPS39-208ENST00000564994 IGHV4-38-2P0DP08 117 aa9.03□□□□□ -0.96
VPS39-208ENST00000564994 ZNF3P17036 446 aa9.03□□□□□ -0.96
VPS39-208ENST00000564994 CPT2P23786 658 aa9.03□□□□□ -0.96
VPS39-208ENST00000564994 FPR2P25090 351 aa9.03□□□□□ -0.96
VPS39-208ENST00000564994 GRK5P34947 590 aa9.03□□□□□ -0.96
VPS39-208ENST00000564994 GNB2P62879 340 aa9.03□□□□□ -0.96
VPS39-208ENST00000564994 UBA52P62987 128 aaKnown RBP9.03□□□□□ -0.96
VPS39-208ENST00000564994 ACTG1P63261 375 aa9.03□□□□□ -0.96
VPS39-208ENST00000564994 ZNF841Q6ZN19 808 aa9.03□□□□□ -0.96
VPS39-208ENST00000564994 PRSS45Q7RTY3 260 aa9.03□□□□□ -0.96
VPS39-208ENST00000564994 DPY19L4Q7Z388 723 aa9.03□□□□□ -0.96
VPS39-208ENST00000564994 HS3ST5Q8IZT8 346 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms