RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 OR56B1Q8NGI3 324 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 OR1J2Q8NGS2 313 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 SNIP1Q8TAD8 396 aaKnown RBP6.62□□□□□ -1.35
VPS39-204ENST00000561818 SMAP2Q8WU79 429 aaPredicted RBP6.62□□□□□ -1.35
VPS39-204ENST00000561818 CCDC107Q8WV48 283 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 MED30Q96HR3 178 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 BOD1Q96IK1 185 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 AMELYQ99218 206 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 SLC25A21Q9BQT8 299 aaPredicted RBP6.62□□□□□ -1.35
VPS39-204ENST00000561818 CHST5Q9GZS9 411 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 SLC25A18Q9H1K4 315 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 GPR35Q9HC97 309 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 PNRC2Q9NPJ4 139 aaKnown RBP6.62□□□□□ -1.35
VPS39-204ENST00000561818 TAS2R4Q9NYW5 299 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 MALT1Q9UDY8 824 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 HRH3Q9Y5N1 445 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 V9GYS6 101 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 KIF26BQ2KJY2 2108 aa6.62□□□□□ -1.35
VPS39-204ENST00000561818 WDR87Q6ZQQ6 2873 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 EML6Q6ZMW3 1958 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 TRAV8-7A0A075B6U6 113 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 IGKV1D-43A0A0B4J1Z2 117 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 A0A0G2JMM0 328 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 A0A1B0GVG6 124 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 A0A1W2PPB8 328 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 A0A1W2PRS3 328 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 MEIOCA2RUB1 952 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 HMX3A6NHT5 357 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 KIR3DP1A8MWS1 328 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 MKRN2OSH3BPM6 223 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 H7C417 338 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 RER1O15258 196 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 MAGEB4O15481 346 aaPredicted RBP6.61□□□□□ -1.35
VPS39-204ENST00000561818 EEF1E1O43324 174 aaKnown RBP6.61□□□□□ -1.35
VPS39-204ENST00000561818 SYNGR3O43761 229 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 SS18L1O75177 396 aaPredicted RBP6.61□□□□□ -1.35
VPS39-204ENST00000561818 CTAG2O75638 210 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 KDM4BO94953 1096 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 MPZL1O95297 269 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 CYB5AP00167 134 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 PAHP00439 452 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 MELTFP08582 738 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 HCKP08631 526 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 GSTP1P09211 210 aaKnown RBP6.61□□□□□ -1.35
VPS39-204ENST00000561818 RFPL3SP0C7P2 107 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 AKAIN1P0CW23 69 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 PRF1P14222 555 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 CRYGSP22914 178 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 TCEA1P23193 301 aaKnown RBP6.61□□□□□ -1.35
VPS39-204ENST00000561818 CPT2P23786 658 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 GDNFP39905 211 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 RPS27P42677 84 aaKnown RBP6.61□□□□□ -1.35
VPS39-204ENST00000561818 HTR5AP47898 357 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 TAS2R20P59543 309 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 C19orf57Q0VDD7 668 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 P2RY14Q15391 338 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 RBMS2Q15434 407 aaKnown RBP6.61□□□□□ -1.35
VPS39-204ENST00000561818 CEACAM16Q2WEN9 425 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 KRTAP27-1Q3LI81 207 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 METTL11BQ5VVY1 283 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 C11orf88Q6PI97 169 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 CORO6Q6QEF8 472 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 CMTM4Q8IZR5 234 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 OR8B12Q8NGG6 310 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 OR51A2Q8NGJ7 313 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 OR51E1Q8TCB6 317 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 WNT2BQ93097 391 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 YIPF5Q969M3 257 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 PIGTQ969N2 578 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 APOBEC3DQ96AK3 386 aaPredicted RBP6.61□□□□□ -1.35
VPS39-204ENST00000561818 FGGYQ96C11 551 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 SLC25A38Q96DW6 304 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 DNAJA3Q96EY1 480 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 SCGB3A2Q96PL1 93 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 LRFN3Q9BTN0 628 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 C11orf54Q9H0W9 315 aaPredicted RBP6.61□□□□□ -1.35
VPS39-204ENST00000561818 CALHM2Q9HA72 323 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 EMC7Q9NPA0 242 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 GPR84Q9NQS5 396 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP6.61□□□□□ -1.35
VPS39-204ENST00000561818 MCUBQ9NWR8 336 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 MTFP1Q9UDX5 166 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 SCP2D1Q9UJQ7 156 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 ZNF221Q9UK13 617 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 SLC7A11Q9UPY5 501 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 PLEKHA6Q9Y2H5 1048 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 MRPS7Q9Y2R9 242 aaKnown RBP6.61□□□□□ -1.35
VPS39-204ENST00000561818 MRPS18BQ9Y676 258 aaKnown RBP6.61□□□□□ -1.35
VPS39-204ENST00000561818 FREM3P0C091 2139 aa6.61□□□□□ -1.35
VPS39-204ENST00000561818 DNAH14Q0VDD8 3507 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 A0A1W2PPK0 400 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 ANKRD20A5PA0PJZ0 165 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 FIGNL2A6NMB9 653 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 POM121CA8CG34 1229 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 FAM166BA8MTA8 275 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 SERPINE3A8MV23 424 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 INMT-MINDY4F8WBC2 141 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 H0YC42 278 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 P2RY10O00398 339 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 CCNKO75909 580 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms