RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 CMBLQ96DG6 245 aa14.49□□□□□ -0.09
SHMT2-231ENST00000557433 PBOV1Q9GZY1 135 aa14.49□□□□□ -0.09
SHMT2-231ENST00000557433 IGFLR1Q9H665 355 aa14.49□□□□□ -0.09
SHMT2-231ENST00000557433 FN3KRPQ9HA64 309 aa14.49□□□□□ -0.09
SHMT2-231ENST00000557433 FANCFQ9NPI8 374 aa14.49□□□□□ -0.09
SHMT2-231ENST00000557433 MEMO1Q9Y316 297 aa14.49□□□□□ -0.09
SHMT2-231ENST00000557433 FLVCR1Q9Y5Y0 555 aa14.49□□□□□ -0.09
SHMT2-231ENST00000557433 ATG2AQ2TAZ0 1938 aa14.48□□□□□ -0.09
SHMT2-231ENST00000557433 PCP4L1A6NKN8 68 aa14.48□□□□□ -0.09
SHMT2-231ENST00000557433 ZNF705EA8MWA4 302 aaPredicted RBP14.48□□□□□ -0.09
SHMT2-231ENST00000557433 IGLV3-19P01714 112 aa14.48□□□□□ -0.09
SHMT2-231ENST00000557433 APOC1P02654 83 aa14.48□□□□□ -0.09
SHMT2-231ENST00000557433 GNB3P16520 340 aa14.48□□□□□ -0.09
SHMT2-231ENST00000557433 GABRG2P18507 467 aa14.48□□□□□ -0.09
SHMT2-231ENST00000557433 ZNF93P35789 620 aaPredicted RBP14.48□□□□□ -0.09
SHMT2-231ENST00000557433 CAV2P51636 162 aa14.48□□□□□ -0.09
SHMT2-231ENST00000557433 SUMO3P55854 103 aaPredicted RBP14.48□□□□□ -0.09
SHMT2-231ENST00000557433 TMEM88Q6PEY1 159 aa14.48□□□□□ -0.09
SHMT2-231ENST00000557433 ZNF441Q8N8Z8 693 aa14.48□□□□□ -0.09
SHMT2-231ENST00000557433 OR4A4PQ8NGN8 299 aa14.48□□□□□ -0.09
SHMT2-231ENST00000557433 TMED6Q8WW62 240 aa14.48□□□□□ -0.09
SHMT2-231ENST00000557433 TSLPQ969D9 159 aa14.48□□□□□ -0.09
SHMT2-231ENST00000557433 SLAMF6Q96DU3 332 aa14.48□□□□□ -0.09
SHMT2-231ENST00000557433 OCSTAMPQ9BR26 566 aa14.48□□□□□ -0.09
SHMT2-231ENST00000557433 LRRC61Q9BV99 259 aa14.48□□□□□ -0.09
SHMT2-231ENST00000557433 TLNRD1Q9H1K6 362 aa14.48□□□□□ -0.09
SHMT2-231ENST00000557433 CENPMQ9NSP4 180 aa14.48□□□□□ -0.09
SHMT2-231ENST00000557433 COA4Q9NYJ1 87 aa14.48□□□□□ -0.09
SHMT2-231ENST00000557433 KIF26BQ2KJY2 2108 aa14.48□□□□□ -0.09
SHMT2-231ENST00000557433 MS4A18H0YCH9 400 aa14.47□□□□□ -0.09
SHMT2-231ENST00000557433 GMFGO60234 142 aa14.47□□□□□ -0.09
SHMT2-231ENST00000557433 PMP2P02689 132 aa14.47□□□□□ -0.09
SHMT2-231ENST00000557433 FOLR2P14207 255 aa14.47□□□□□ -0.09
SHMT2-231ENST00000557433 HIST1H1DP16402 221 aaKnown RBP14.47□□□□□ -0.09
SHMT2-231ENST00000557433 ZNF20P17024 532 aa14.47□□□□□ -0.09
SHMT2-231ENST00000557433 AKR1D1P51857 326 aa14.47□□□□□ -0.09
SHMT2-231ENST00000557433 SURF2Q15527 256 aaPredicted RBP14.47□□□□□ -0.09
SHMT2-231ENST00000557433 HYAL4Q2M3T9 481 aa14.47□□□□□ -0.09
SHMT2-231ENST00000557433 MS4A18Q3C1V0 323 aa14.47□□□□□ -0.09
SHMT2-231ENST00000557433 ZNF585AQ6P3V2 769 aa14.47□□□□□ -0.09
SHMT2-231ENST00000557433 Q7L0L9 218 aa14.47□□□□□ -0.09
SHMT2-231ENST00000557433 ANGPTL5Q86XS5 388 aa14.47□□□□□ -0.09
SHMT2-231ENST00000557433 BOLLQ8N9W6 283 aaKnown RBP14.47□□□□□ -0.09
SHMT2-231ENST00000557433 RAB3CQ96E17 227 aa14.47□□□□□ -0.09
SHMT2-231ENST00000557433 C2orf50Q96LR7 162 aa14.47□□□□□ -0.09
SHMT2-231ENST00000557433 C12orf57Q99622 126 aa14.47□□□□□ -0.09
SHMT2-231ENST00000557433 NRIP2Q9BQI9 281 aa14.47□□□□□ -0.09
SHMT2-231ENST00000557433 RAB33BQ9H082 229 aa14.47□□□□□ -0.09
SHMT2-231ENST00000557433 LPAR5Q9H1C0 372 aa14.47□□□□□ -0.09
SHMT2-231ENST00000557433 RCC2Q9P258 522 aaKnown RBP14.47□□□□□ -0.09
SHMT2-231ENST00000557433 SRPK3Q9UPE1 567 aa14.47□□□□□ -0.09
SHMT2-231ENST00000557433 FIGNL2A6NMB9 653 aa14.47□□□□□ -0.09
SHMT2-231ENST00000557433 LMX1BO60663 402 aa14.47□□□□□ -0.09
SHMT2-231ENST00000557433 APOBEC1P41238 236 aaKnown RBP14.47□□□□□ -0.09
SHMT2-231ENST00000557433 TFF2Q03403 129 aa14.47□□□□□ -0.09
SHMT2-231ENST00000557433 OR7A5Q15622 319 aa14.47□□□□□ -0.09
SHMT2-231ENST00000557433 MST1LQ2TV78 715 aa14.47□□□□□ -0.09
SHMT2-231ENST00000557433 CBLN2Q8IUK8 224 aa14.47□□□□□ -0.09
SHMT2-231ENST00000557433 LINC00346Q8IVM7 164 aa14.47□□□□□ -0.09
SHMT2-231ENST00000557433 OR56B1Q8NGI3 324 aa14.47□□□□□ -0.09
SHMT2-231ENST00000557433 OR1N1Q8NGS0 311 aa14.47□□□□□ -0.09
SHMT2-231ENST00000557433 RHBDD1Q8TEB9 315 aa14.47□□□□□ -0.09
SHMT2-231ENST00000557433 ADAT3Q96EY9 351 aaPredicted RBP14.47□□□□□ -0.09
SHMT2-231ENST00000557433 RRNAD1Q96FB5 475 aaKnown RBP14.47□□□□□ -0.09
SHMT2-231ENST00000557433 KLHDC7BQ96G42 594 aa14.47□□□□□ -0.09
SHMT2-231ENST00000557433 NECAB3Q96P71 396 aaPredicted RBP14.47□□□□□ -0.09
SHMT2-231ENST00000557433 GAS2L1Q99501 681 aaPredicted RBP14.47□□□□□ -0.09
SHMT2-231ENST00000557433 KLHL13Q9P2N7 655 aa14.47□□□□□ -0.09
SHMT2-231ENST00000557433 CTSFQ9UBX1 484 aa14.47□□□□□ -0.09
SHMT2-231ENST00000557433 ANKUB1A6NFN9 424 aa14.46□□□□□ -0.09
SHMT2-231ENST00000557433 H0YIZ8 118 aa14.46□□□□□ -0.09
SHMT2-231ENST00000557433 CSTBP04080 98 aaKnown RBP14.46□□□□□ -0.09
SHMT2-231ENST00000557433 RPL35P42766 123 aaKnown RBP14.46□□□□□ -0.09
SHMT2-231ENST00000557433 TAS2R46P59540 309 aa14.46□□□□□ -0.09
SHMT2-231ENST00000557433 HSF1Q00613 529 aa14.46□□□□□ -0.09
SHMT2-231ENST00000557433 HMGN3Q15651 99 aa14.46□□□□□ -0.09
SHMT2-231ENST00000557433 SLC22A6Q4U2R8 563 aa14.46□□□□□ -0.09
SHMT2-231ENST00000557433 TMEM31Q5JXX7 168 aa14.46□□□□□ -0.09
SHMT2-231ENST00000557433 ZNF101Q8IZC7 436 aa14.46□□□□□ -0.09
SHMT2-231ENST00000557433 CARFQ8N187 725 aa14.46□□□□□ -0.09
SHMT2-231ENST00000557433 OR5H2Q8NGV7 314 aa14.46□□□□□ -0.09
SHMT2-231ENST00000557433 URM1Q9BTM9 101 aaKnown RBP14.46□□□□□ -0.09
SHMT2-231ENST00000557433 OR11A1Q9GZK7 315 aa14.46□□□□□ -0.09
SHMT2-231ENST00000557433 C5orf66Q9H5L9 145 aa14.46□□□□□ -0.09
SHMT2-231ENST00000557433 RHOFQ9HBH0 211 aa14.46□□□□□ -0.09
SHMT2-231ENST00000557433 CHST11Q9NPF2 352 aa14.46□□□□□ -0.09
SHMT2-231ENST00000557433 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP14.46□□□□□ -0.09
SHMT2-231ENST00000557433 MBTPS2O43462 519 aa14.45□□□□□ -0.1
SHMT2-231ENST00000557433 ECI1P42126 302 aa14.45□□□□□ -0.1
SHMT2-231ENST00000557433 AKR1C2P52895 323 aa14.45□□□□□ -0.1
SHMT2-231ENST00000557433 AKR1C1Q04828 323 aa14.45□□□□□ -0.1
SHMT2-231ENST00000557433 ARL6IP1Q15041 203 aa14.45□□□□□ -0.1
SHMT2-231ENST00000557433 CLEC18BQ6UXF7 455 aa14.45□□□□□ -0.1
SHMT2-231ENST00000557433 LHFPL1Q86WI0 220 aa14.45□□□□□ -0.1
SHMT2-231ENST00000557433 GKN2Q86XP6 184 aa14.45□□□□□ -0.1
SHMT2-231ENST00000557433 KDF1Q8NAX2 398 aaPredicted RBP14.45□□□□□ -0.1
SHMT2-231ENST00000557433 TMEM230Q96A57 120 aa14.45□□□□□ -0.1
SHMT2-231ENST00000557433 ZDHHC12Q96GR4 267 aa14.45□□□□□ -0.1
SHMT2-231ENST00000557433 NRSN2Q9GZP1 204 aa14.45□□□□□ -0.1
SHMT2-231ENST00000557433 SLC5A7Q9GZV3 580 aa14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms