RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 H0YL77 283 aa11.6□□□□□ -0.55
SHMT2-219ENST00000555563 LMX1BO60663 402 aa11.6□□□□□ -0.55
SHMT2-219ENST00000555563 TGFAP01135 160 aa11.6□□□□□ -0.55
SHMT2-219ENST00000555563 LYNP07948 512 aa11.6□□□□□ -0.55
SHMT2-219ENST00000555563 MRPL3P09001 348 aaKnown RBP11.6□□□□□ -0.55
SHMT2-219ENST00000555563 TNFRSF1AP19438 455 aa11.6□□□□□ -0.55
SHMT2-219ENST00000555563 ZNF121P58317 390 aaPredicted RBP11.6□□□□□ -0.55
SHMT2-219ENST00000555563 LCN1P1Q5VSP4 162 aa11.6□□□□□ -0.55
SHMT2-219ENST00000555563 BCDIN3DQ7Z5W3 292 aaKnown RBP11.6□□□□□ -0.55
SHMT2-219ENST00000555563 PRIMA1Q86XR5 153 aa11.6□□□□□ -0.55
SHMT2-219ENST00000555563 TCEANCQ8N8B7 351 aa11.6□□□□□ -0.55
SHMT2-219ENST00000555563 ZNF454Q8N9F8 522 aa11.6□□□□□ -0.55
SHMT2-219ENST00000555563 LINC01356Q8N9X3 169 aa11.6□□□□□ -0.55
SHMT2-219ENST00000555563 THEM6Q8WUY1 208 aa11.6□□□□□ -0.55
SHMT2-219ENST00000555563 TIMD4Q96H15 378 aa11.6□□□□□ -0.55
SHMT2-219ENST00000555563 C1orf159Q96HA4 380 aa11.6□□□□□ -0.55
SHMT2-219ENST00000555563 MEGF10Q96KG7 1140 aa11.6□□□□□ -0.55
SHMT2-219ENST00000555563 MDFIQ99750 246 aa11.6□□□□□ -0.55
SHMT2-219ENST00000555563 TOR3AQ9H497 397 aa11.6□□□□□ -0.55
SHMT2-219ENST00000555563 RIBC2Q9H4K1 309 aa11.6□□□□□ -0.55
SHMT2-219ENST00000555563 IL19Q9UHD0 177 aa11.6□□□□□ -0.55
SHMT2-219ENST00000555563 KCNS2Q9ULS6 477 aa11.6□□□□□ -0.55
SHMT2-219ENST00000555563 MALRD1Q5VYJ5 2156 aa11.6□□□□□ -0.55
SHMT2-219ENST00000555563 SONP18583 2426 aaKnown RBP11.59□□□□□ -0.55
SHMT2-219ENST00000555563 IGHV3-64DA0A0J9YX35 117 aa11.59□□□□□ -0.55
SHMT2-219ENST00000555563 CD300LBA8K4G0 201 aa11.59□□□□□ -0.55
SHMT2-219ENST00000555563 FAM157AC9JC47 383 aa11.59□□□□□ -0.55
SHMT2-219ENST00000555563 F5H5P2 479 aa11.59□□□□□ -0.55
SHMT2-219ENST00000555563 TBX1O43435 398 aa11.59□□□□□ -0.55
SHMT2-219ENST00000555563 XRCC2O43543 280 aa11.59□□□□□ -0.55
SHMT2-219ENST00000555563 HLA-DPB1P04440 258 aa11.59□□□□□ -0.55
SHMT2-219ENST00000555563 ANXA2P07355 339 aaKnown RBP11.59□□□□□ -0.55
SHMT2-219ENST00000555563 H2BFMP0C1H6 154 aa11.59□□□□□ -0.55
SHMT2-219ENST00000555563 POLR2IP36954 125 aaKnown RBP11.59□□□□□ -0.55
SHMT2-219ENST00000555563 MMP16P51512 607 aa11.59□□□□□ -0.55
SHMT2-219ENST00000555563 LMO4P61968 165 aa11.59□□□□□ -0.55
SHMT2-219ENST00000555563 EFNB1P98172 346 aa11.59□□□□□ -0.55
SHMT2-219ENST00000555563 SLC3A1Q07837 685 aa11.59□□□□□ -0.55
SHMT2-219ENST00000555563 RHOUQ7L0Q8 258 aa11.59□□□□□ -0.55
SHMT2-219ENST00000555563 SLC16A9Q7RTY1 509 aa11.59□□□□□ -0.55
SHMT2-219ENST00000555563 PRSS45Q7RTY3 260 aa11.59□□□□□ -0.55
SHMT2-219ENST00000555563 TMEM163Q8TC26 289 aa11.59□□□□□ -0.55
SHMT2-219ENST00000555563 SPRYD4Q8WW59 207 aaPredicted RBP11.59□□□□□ -0.55
SHMT2-219ENST00000555563 RAB1CQ92928 201 aa11.59□□□□□ -0.55
SHMT2-219ENST00000555563 RAB3IPQ96QF0 476 aaPredicted RBP11.59□□□□□ -0.55
SHMT2-219ENST00000555563 IL4I1Q96RQ9 567 aa11.59□□□□□ -0.55
SHMT2-219ENST00000555563 TEAD3Q99594 435 aa11.59□□□□□ -0.55
SHMT2-219ENST00000555563 RBM4BQ9BQ04 359 aaKnown RBP11.59□□□□□ -0.55
SHMT2-219ENST00000555563 REPIN1Q9BWE0 567 aaKnown RBP11.59□□□□□ -0.55
SHMT2-219ENST00000555563 TMEM106BQ9NUM4 274 aa11.59□□□□□ -0.55
SHMT2-219ENST00000555563 TMEM160Q9NX00 188 aa11.59□□□□□ -0.55
SHMT2-219ENST00000555563 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.59□□□□□ -0.55
SHMT2-219ENST00000555563 LAMP5Q9UJQ1 280 aa11.59□□□□□ -0.55
SHMT2-219ENST00000555563 PPP1R3CQ9UQK1 317 aa11.59□□□□□ -0.55
SHMT2-219ENST00000555563 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.58□□□□□ -0.562e-7■■■■□ 26.6
SHMT2-219ENST00000555563 ISPDA4D126 451 aa11.58□□□□□ -0.56
SHMT2-219ENST00000555563 GGT3PA6NGU5 568 aa11.58□□□□□ -0.56
SHMT2-219ENST00000555563 KIAA1324LA8MWY0 1029 aaPredicted RBP11.58□□□□□ -0.56
SHMT2-219ENST00000555563 EI24O14681 340 aa11.58□□□□□ -0.56
SHMT2-219ENST00000555563 ALOX5APP20292 161 aa11.58□□□□□ -0.56
SHMT2-219ENST00000555563 HCCSP53701 268 aa11.58□□□□□ -0.56
SHMT2-219ENST00000555563 AADACL4Q5VUY2 407 aa11.58□□□□□ -0.56
SHMT2-219ENST00000555563 LRRN1Q6UXK5 716 aa11.58□□□□□ -0.56
SHMT2-219ENST00000555563 FAM57BQ71RH2 274 aa11.58□□□□□ -0.56
SHMT2-219ENST00000555563 ZNF771Q7L3S4 317 aaPredicted RBP11.58□□□□□ -0.56
SHMT2-219ENST00000555563 OR56B2PQ8NGI1 322 aa11.58□□□□□ -0.56
SHMT2-219ENST00000555563 SPSB4Q96A44 273 aa11.58□□□□□ -0.56
SHMT2-219ENST00000555563 SIGLEC11Q96RL6 698 aa11.58□□□□□ -0.56
SHMT2-219ENST00000555563 CNN2Q99439 309 aaKnown RBP11.58□□□□□ -0.56
SHMT2-219ENST00000555563 GAL3ST1Q99999 423 aa11.58□□□□□ -0.56
SHMT2-219ENST00000555563 YIPF3Q9GZM5 350 aa11.58□□□□□ -0.56
SHMT2-219ENST00000555563 OPA3Q9H6K4 179 aa11.58□□□□□ -0.56
SHMT2-219ENST00000555563 ZNF665Q9H7R5 613 aa11.58□□□□□ -0.56
SHMT2-219ENST00000555563 LPAR2Q9HBW0 351 aa11.58□□□□□ -0.56
SHMT2-219ENST00000555563 GCM1Q9NP62 436 aa11.58□□□□□ -0.56
SHMT2-219ENST00000555563 BRD7Q9NPI1 651 aa11.58□□□□□ -0.56
SHMT2-219ENST00000555563 TMEM100Q9NV29 134 aa11.58□□□□□ -0.56
SHMT2-219ENST00000555563 DYSFO75923 2080 aa11.58□□□□□ -0.56
SHMT2-219ENST00000555563 PRR32B1ATL7 298 aa11.57□□□□□ -0.56
SHMT2-219ENST00000555563 B4DSR2 109 aa11.57□□□□□ -0.56
SHMT2-219ENST00000555563 IGHV2-70P01814 119 aa11.57□□□□□ -0.56
SHMT2-219ENST00000555563 IGHV2-5P01817 119 aa11.57□□□□□ -0.56
SHMT2-219ENST00000555563 APOC1P02654 83 aa11.57□□□□□ -0.56
SHMT2-219ENST00000555563 ALPLP05186 524 aa11.57□□□□□ -0.56
SHMT2-219ENST00000555563 CA6P23280 308 aa11.57□□□□□ -0.56
SHMT2-219ENST00000555563 SRP9P49458 86 aaKnown RBP11.57□□□□□ -0.56
SHMT2-219ENST00000555563 PSMA6P60900 246 aaKnown RBP11.57□□□□□ -0.56
SHMT2-219ENST00000555563 TIGD6Q17RP2 521 aa11.57□□□□□ -0.56
SHMT2-219ENST00000555563 GFOD2Q3B7J2 385 aa11.57□□□□□ -0.56
SHMT2-219ENST00000555563 CHRFAM7AQ494W8 412 aa11.57□□□□□ -0.56
SHMT2-219ENST00000555563 NXNL2Q5VZ03 156 aa11.57□□□□□ -0.56
SHMT2-219ENST00000555563 IL17RELQ6ZVW7 336 aa11.57□□□□□ -0.56
SHMT2-219ENST00000555563 MEPCEQ7L2J0 689 aaKnown RBP11.57□□□□□ -0.56
SHMT2-219ENST00000555563 PEG10Q86TG7 708 aaKnown RBP11.57□□□□□ -0.56
SHMT2-219ENST00000555563 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.57□□□□□ -0.56
SHMT2-219ENST00000555563 GID4Q8IVV7 300 aa11.57□□□□□ -0.56
SHMT2-219ENST00000555563 RFLNBQ8N5W9 214 aa11.57□□□□□ -0.56
SHMT2-219ENST00000555563 OR52H1Q8NGJ2 320 aa11.57□□□□□ -0.56
SHMT2-219ENST00000555563 ZNF420Q8TAQ5 688 aaPredicted RBP11.57□□□□□ -0.56
SHMT2-219ENST00000555563 DVL3Q92997 716 aaPredicted RBP11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms