RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 KLBQ86Z14 1044 aa13.51□□□□□ -0.25
CCDC88C-209ENST00000554872 MUC20Q8N307 709 aaPredicted RBP13.51□□□□□ -0.25
CCDC88C-209ENST00000554872 KLHL36Q8N4N3 616 aa13.51□□□□□ -0.25
CCDC88C-209ENST00000554872 IQCF1Q8N6M8 205 aa13.51□□□□□ -0.25
CCDC88C-209ENST00000554872 ATG16L2Q8NAA4 619 aa13.51□□□□□ -0.25
CCDC88C-209ENST00000554872 PLPP7Q8NBV4 271 aa13.51□□□□□ -0.25
CCDC88C-209ENST00000554872 OR4M2Q8NGB6 313 aa13.51□□□□□ -0.25
CCDC88C-209ENST00000554872 OR10AD1Q8NGE0 317 aa13.51□□□□□ -0.25
CCDC88C-209ENST00000554872 RNF133Q8WVZ7 376 aa13.51□□□□□ -0.25
CCDC88C-209ENST00000554872 UTP4Q969X6 686 aaKnown RBP13.51□□□□□ -0.25
CCDC88C-209ENST00000554872 INTS14Q96SY0 518 aa13.51□□□□□ -0.25
CCDC88C-209ENST00000554872 COPS4Q9BT78 406 aa13.51□□□□□ -0.25
CCDC88C-209ENST00000554872 PATZ1Q9HBE1 687 aaKnown RBP13.51□□□□□ -0.25
CCDC88C-209ENST00000554872 DCAF16Q9NXF7 216 aa13.51□□□□□ -0.25
CCDC88C-209ENST00000554872 A0A0A6YYJ9 748 aa13.5□□□□□ -0.25
CCDC88C-209ENST00000554872 CD300LBA8K4G0 201 aa13.5□□□□□ -0.25
CCDC88C-209ENST00000554872 RNF212BA8MTL3 300 aa13.5□□□□□ -0.25
CCDC88C-209ENST00000554872 XRCC2O43543 280 aa13.5□□□□□ -0.25
CCDC88C-209ENST00000554872 FOXH1O75593 365 aa13.5□□□□□ -0.25
CCDC88C-209ENST00000554872 APOC1P02654 83 aa13.5□□□□□ -0.25
CCDC88C-209ENST00000554872 GSTT1P30711 240 aa13.5□□□□□ -0.25
CCDC88C-209ENST00000554872 SLC6A9P48067 706 aa13.5□□□□□ -0.25
CCDC88C-209ENST00000554872 RAD23AP54725 363 aa13.5□□□□□ -0.25
CCDC88C-209ENST00000554872 GINS1Q14691 196 aa13.5□□□□□ -0.25
CCDC88C-209ENST00000554872 ZMYND11Q15326 602 aa13.5□□□□□ -0.25
CCDC88C-209ENST00000554872 SLC35D3Q5M8T2 416 aa13.5□□□□□ -0.25
CCDC88C-209ENST00000554872 ZNF454Q8N9F8 522 aa13.5□□□□□ -0.25
CCDC88C-209ENST00000554872 DUS3LQ96G46 650 aaKnown RBP13.5□□□□□ -0.25
CCDC88C-209ENST00000554872 SP140LQ9H930 580 aa13.5□□□□□ -0.25
CCDC88C-209ENST00000554872 LPAR2Q9HBW0 351 aa13.5□□□□□ -0.25
CCDC88C-209ENST00000554872 MRPL15Q9P015 296 aaKnown RBP13.5□□□□□ -0.25
CCDC88C-209ENST00000554872 ISPDA4D126 451 aa13.49□□□□□ -0.25
CCDC88C-209ENST00000554872 FAM183AA6NL82 134 aa13.49□□□□□ -0.25
CCDC88C-209ENST00000554872 LRRC30A6NM36 301 aa13.49□□□□□ -0.25
CCDC88C-209ENST00000554872 PRR23D1E9PI22 279 aaPredicted RBP13.49□□□□□ -0.25
CCDC88C-209ENST00000554872 GMDSO60547 372 aa13.49□□□□□ -0.25
CCDC88C-209ENST00000554872 PRR23D2P0DMB1 279 aaPredicted RBP13.49□□□□□ -0.25
CCDC88C-209ENST00000554872 DDOSTP39656 456 aa13.49□□□□□ -0.25
CCDC88C-209ENST00000554872 OPRL1P41146 370 aa13.49□□□□□ -0.25
CCDC88C-209ENST00000554872 ZNF92Q03936 586 aa13.49□□□□□ -0.25
CCDC88C-209ENST00000554872 PRSS45Q7RTY3 260 aa13.49□□□□□ -0.25
CCDC88C-209ENST00000554872 DPY19L4Q7Z388 723 aa13.49□□□□□ -0.25
CCDC88C-209ENST00000554872 C1QL2Q7Z5L3 287 aa13.49□□□□□ -0.25
CCDC88C-209ENST00000554872 PHC2Q8IXK0 858 aa13.49□□□□□ -0.25
CCDC88C-209ENST00000554872 HS3ST5Q8IZT8 346 aa13.49□□□□□ -0.25
CCDC88C-209ENST00000554872 C1orf87Q8N0U7 546 aa13.49□□□□□ -0.25
CCDC88C-209ENST00000554872 BHLHE23Q8NDY6 225 aa13.49□□□□□ -0.25
CCDC88C-209ENST00000554872 ABHD6Q9BV23 337 aa13.49□□□□□ -0.25
CCDC88C-209ENST00000554872 TEX12Q9BXU0 123 aa13.49□□□□□ -0.25
CCDC88C-209ENST00000554872 TMPRSS13Q9BYE2 586 aa13.49□□□□□ -0.25
CCDC88C-209ENST00000554872 MED20Q9H944 212 aa13.49□□□□□ -0.25
CCDC88C-209ENST00000554872 F5H5P2 479 aa13.48□□□□□ -0.25
CCDC88C-209ENST00000554872 H0YL77 283 aa13.48□□□□□ -0.25
CCDC88C-209ENST00000554872 SBK2P0C263 348 aa13.48□□□□□ -0.25
CCDC88C-209ENST00000554872 SLC2A5P22732 501 aa13.48□□□□□ -0.25
CCDC88C-209ENST00000554872 CFL1P23528 166 aaKnown RBP13.48□□□□□ -0.25
CCDC88C-209ENST00000554872 MAB21L1Q13394 359 aa13.48□□□□□ -0.25
CCDC88C-209ENST00000554872 EIF2B1Q14232 305 aaKnown RBP13.48□□□□□ -0.25
CCDC88C-209ENST00000554872 TAF13Q15543 124 aa13.48□□□□□ -0.25
CCDC88C-209ENST00000554872 GLYATL3Q5SZD4 288 aa13.48□□□□□ -0.25
CCDC88C-209ENST00000554872 DCAF12L2Q5VW00 463 aa13.48□□□□□ -0.25
CCDC88C-209ENST00000554872 C1orf229Q6ZS94 237 aaPredicted RBP13.48□□□□□ -0.25
CCDC88C-209ENST00000554872 ERI1Q8IV48 349 aaKnown RBP13.48□□□□□ -0.25
CCDC88C-209ENST00000554872 SPERTQ8NA61 448 aa13.48□□□□□ -0.25
CCDC88C-209ENST00000554872 OR52H1Q8NGJ2 320 aa13.48□□□□□ -0.25
CCDC88C-209ENST00000554872 OR6N2Q8NGY6 317 aa13.48□□□□□ -0.25
CCDC88C-209ENST00000554872 OTOSQ8NHW6 89 aa13.48□□□□□ -0.25
CCDC88C-209ENST00000554872 SPRYD4Q8WW59 207 aaPredicted RBP13.48□□□□□ -0.25
CCDC88C-209ENST00000554872 PAPOLBQ9NRJ5 636 aaKnown RBP13.48□□□□□ -0.25
CCDC88C-209ENST00000554872 CENPMQ9NSP4 180 aa13.48□□□□□ -0.25
CCDC88C-209ENST00000554872 METRNQ9UJH8 293 aa13.48□□□□□ -0.25
CCDC88C-209ENST00000554872 LRCH1Q9Y2L9 728 aa13.48□□□□□ -0.25
CCDC88C-209ENST00000554872 TCF21O43680 179 aa13.47□□□□□ -0.25
CCDC88C-209ENST00000554872 FSHBP01225 129 aa13.47□□□□□ -0.25
CCDC88C-209ENST00000554872 PRKACGP22612 351 aa13.47□□□□□ -0.25
CCDC88C-209ENST00000554872 ANOS1P23352 680 aa13.47□□□□□ -0.25
CCDC88C-209ENST00000554872 POU1F1P28069 291 aa13.47□□□□□ -0.25
CCDC88C-209ENST00000554872 ESRRGP62508 458 aa13.47□□□□□ -0.25
CCDC88C-209ENST00000554872 ATP6AP1Q15904 470 aa13.47□□□□□ -0.25
CCDC88C-209ENST00000554872 KRTAP24-1Q3LI83 254 aa13.47□□□□□ -0.25
CCDC88C-209ENST00000554872 LIPNQ5VXI9 398 aa13.47□□□□□ -0.25
CCDC88C-209ENST00000554872 FAHD2BQ6P2I3 314 aaPredicted RBP13.47□□□□□ -0.25
CCDC88C-209ENST00000554872 PLBD1Q6P4A8 553 aa13.47□□□□□ -0.25
CCDC88C-209ENST00000554872 OR5K1Q8NHB7 308 aa13.47□□□□□ -0.25
CCDC88C-209ENST00000554872 ITFG2Q969R8 447 aa13.47□□□□□ -0.25
CCDC88C-209ENST00000554872 FAHD2AQ96GK7 314 aa13.47□□□□□ -0.25
CCDC88C-209ENST00000554872 GABARAPL1Q9H0R8 117 aa13.47□□□□□ -0.25
CCDC88C-209ENST00000554872 RGCCQ9H4X1 137 aa13.47□□□□□ -0.25
CCDC88C-209ENST00000554872 UBAP1Q9NZ09 502 aa13.47□□□□□ -0.25
CCDC88C-209ENST00000554872 PCDHB10Q9UN67 800 aa13.47□□□□□ -0.25
CCDC88C-209ENST00000554872 C5orf63A6NC05 138 aa13.46□□□□□ -0.25
CCDC88C-209ENST00000554872 CEACAM18A8MTB9 384 aa13.46□□□□□ -0.25
CCDC88C-209ENST00000554872 HLA-DPB1P04440 258 aa13.46□□□□□ -0.25
CCDC88C-209ENST00000554872 HSD11B1P28845 292 aa13.46□□□□□ -0.25
CCDC88C-209ENST00000554872 PMELP40967 661 aa13.46□□□□□ -0.25
CCDC88C-209ENST00000554872 CX3CR1P49238 355 aa13.46□□□□□ -0.25
CCDC88C-209ENST00000554872 PRKXP51817 358 aa13.46□□□□□ -0.25
CCDC88C-209ENST00000554872 MZT1Q08AG7 82 aa13.46□□□□□ -0.25
CCDC88C-209ENST00000554872 OR8G1Q15617 311 aa13.46□□□□□ -0.25
CCDC88C-209ENST00000554872 ZNF404Q494X3 552 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms