RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 OPRL1P41146 370 aa9.78□□□□□ -0.84
CCDC88C-208ENST00000554165 CX3CR1P49238 355 aa9.78□□□□□ -0.84
CCDC88C-208ENST00000554165 BLVRAP53004 296 aa9.78□□□□□ -0.84
CCDC88C-208ENST00000554165 CDH15P55291 814 aa9.78□□□□□ -0.84
CCDC88C-208ENST00000554165 EFNB1P98172 346 aa9.78□□□□□ -0.84
CCDC88C-208ENST00000554165 MALLQ13021 153 aa9.78□□□□□ -0.84
CCDC88C-208ENST00000554165 SLX4IPQ5VYV7 408 aa9.78□□□□□ -0.84
CCDC88C-208ENST00000554165 C12orf73Q69YU5 71 aa9.78□□□□□ -0.84
CCDC88C-208ENST00000554165 FAM166AQ6J272 317 aa9.78□□□□□ -0.84
CCDC88C-208ENST00000554165 DRAM2Q6UX65 266 aa9.78□□□□□ -0.84
CCDC88C-208ENST00000554165 PRSS45Q7RTY3 260 aa9.78□□□□□ -0.84
CCDC88C-208ENST00000554165 RFLNBQ8N5W9 214 aa9.78□□□□□ -0.84
CCDC88C-208ENST00000554165 TCEANCQ8N8B7 351 aa9.78□□□□□ -0.84
CCDC88C-208ENST00000554165 ZNF420Q8TAQ5 688 aaPredicted RBP9.78□□□□□ -0.84
CCDC88C-208ENST00000554165 THEM6Q8WUY1 208 aa9.78□□□□□ -0.84
CCDC88C-208ENST00000554165 DNAJC9Q8WXX5 260 aa9.78□□□□□ -0.84
CCDC88C-208ENST00000554165 C1orf159Q96HA4 380 aa9.78□□□□□ -0.84
CCDC88C-208ENST00000554165 MEGF10Q96KG7 1140 aa9.78□□□□□ -0.84
CCDC88C-208ENST00000554165 IL4I1Q96RQ9 567 aa9.78□□□□□ -0.84
CCDC88C-208ENST00000554165 DIRC2Q96SL1 478 aa9.78□□□□□ -0.84
CCDC88C-208ENST00000554165 TEAD3Q99594 435 aa9.78□□□□□ -0.84
CCDC88C-208ENST00000554165 TTTY10Q9BZA0 68 aa9.78□□□□□ -0.84
CCDC88C-208ENST00000554165 PPP1R3EQ9H7J1 279 aa9.78□□□□□ -0.84
CCDC88C-208ENST00000554165 CGGBP1Q9UFW8 167 aaPredicted RBP9.78□□□□□ -0.84
CCDC88C-208ENST00000554165 TANC2Q9HCD6 1990 aa9.77□□□□□ -0.84
CCDC88C-208ENST00000554165 ISPDA4D126 451 aa9.77□□□□□ -0.85
CCDC88C-208ENST00000554165 CD300LBA8K4G0 201 aa9.77□□□□□ -0.85
CCDC88C-208ENST00000554165 PSMD9O00233 223 aa9.77□□□□□ -0.85
CCDC88C-208ENST00000554165 MAGEB4O15481 346 aaPredicted RBP9.77□□□□□ -0.85
CCDC88C-208ENST00000554165 PRODHO43272 600 aa9.77□□□□□ -0.85
CCDC88C-208ENST00000554165 TBX1O43435 398 aa9.77□□□□□ -0.85
CCDC88C-208ENST00000554165 ANXA2P07355 339 aaKnown RBP9.77□□□□□ -0.85
CCDC88C-208ENST00000554165 SBK2P0C263 348 aa9.77□□□□□ -0.85
CCDC88C-208ENST00000554165 FCGR1AP12314 374 aa9.77□□□□□ -0.85
CCDC88C-208ENST00000554165 CA6P23280 308 aa9.77□□□□□ -0.85
CCDC88C-208ENST00000554165 ZNF121P58317 390 aaPredicted RBP9.77□□□□□ -0.85
CCDC88C-208ENST00000554165 ESRRGP62508 458 aa9.77□□□□□ -0.85
CCDC88C-208ENST00000554165 CR1LQ2VPA4 569 aa9.77□□□□□ -0.85
CCDC88C-208ENST00000554165 ZMAT1Q5H9K5 638 aa9.77□□□□□ -0.85
CCDC88C-208ENST00000554165 FAM201AQ5SY85 155 aa9.77□□□□□ -0.85
CCDC88C-208ENST00000554165 FAM120AOSQ5T036 256 aa9.77□□□□□ -0.85
CCDC88C-208ENST00000554165 LRRN1Q6UXK5 716 aa9.77□□□□□ -0.85
CCDC88C-208ENST00000554165 FAM57BQ71RH2 274 aa9.77□□□□□ -0.85
CCDC88C-208ENST00000554165 PGAP1Q75T13 922 aa9.77□□□□□ -0.85
CCDC88C-208ENST00000554165 SHFQ7M4L6 423 aa9.77□□□□□ -0.85
CCDC88C-208ENST00000554165 MRPL21Q7Z2W9 205 aaKnown RBP9.77□□□□□ -0.85
CCDC88C-208ENST00000554165 MOGAT3Q86VF5 341 aa9.77□□□□□ -0.85
CCDC88C-208ENST00000554165 LINC01356Q8N9X3 169 aa9.77□□□□□ -0.85
CCDC88C-208ENST00000554165 OR13G1Q8NGZ3 307 aa9.77□□□□□ -0.85
CCDC88C-208ENST00000554165 OTOSQ8NHW6 89 aa9.77□□□□□ -0.85
CCDC88C-208ENST00000554165 HPS1Q92902 700 aa9.77□□□□□ -0.85
CCDC88C-208ENST00000554165 UBE2FQ969M7 185 aa9.77□□□□□ -0.85
CCDC88C-208ENST00000554165 SIGLEC11Q96RL6 698 aa9.77□□□□□ -0.85
CCDC88C-208ENST00000554165 REPIN1Q9BWE0 567 aaKnown RBP9.77□□□□□ -0.85
CCDC88C-208ENST00000554165 RIBC2Q9H4K1 309 aa9.77□□□□□ -0.85
CCDC88C-208ENST00000554165 ZNF665Q9H7R5 613 aa9.77□□□□□ -0.85
CCDC88C-208ENST00000554165 TMEM106BQ9NUM4 274 aa9.77□□□□□ -0.85
CCDC88C-208ENST00000554165 TMEM100Q9NV29 134 aa9.77□□□□□ -0.85
CCDC88C-208ENST00000554165 ZKSCAN7Q9P0L1 754 aaPredicted RBP9.77□□□□□ -0.85
CCDC88C-208ENST00000554165 KCNS2Q9ULS6 477 aa9.77□□□□□ -0.85
CCDC88C-208ENST00000554165 COPS3Q9UNS2 423 aa9.77□□□□□ -0.85
CCDC88C-208ENST00000554165 PPP1R3CQ9UQK1 317 aa9.77□□□□□ -0.85
CCDC88C-208ENST00000554165 COL6A5A8TX70 2615 aa9.77□□□□□ -0.85
CCDC88C-208ENST00000554165 SVEP1Q4LDE5 3571 aa9.76□□□□□ -0.85
CCDC88C-208ENST00000554165 A0A1B0GWJ7 208 aa9.76□□□□□ -0.85
CCDC88C-208ENST00000554165 GGT3PA6NGU5 568 aa9.76□□□□□ -0.85
CCDC88C-208ENST00000554165 CYB5R3P00387 301 aaPredicted RBP9.76□□□□□ -0.85
CCDC88C-208ENST00000554165 LYNP07948 512 aa9.76□□□□□ -0.85
CCDC88C-208ENST00000554165 H2BFMP0C1H6 154 aa9.76□□□□□ -0.85
CCDC88C-208ENST00000554165 ALOX5APP20292 161 aa9.76□□□□□ -0.85
CCDC88C-208ENST00000554165 TNFSF4P23510 183 aa9.76□□□□□ -0.85
CCDC88C-208ENST00000554165 HSD11B1P28845 292 aa9.76□□□□□ -0.85
CCDC88C-208ENST00000554165 MMP16P51512 607 aa9.76□□□□□ -0.85
CCDC88C-208ENST00000554165 GRB2P62993 217 aaKnown RBP9.76□□□□□ -0.85
CCDC88C-208ENST00000554165 MAB21L1Q13394 359 aa9.76□□□□□ -0.85
CCDC88C-208ENST00000554165 MPPED2Q15777 294 aa9.76□□□□□ -0.85
CCDC88C-208ENST00000554165 GFOD2Q3B7J2 385 aa9.76□□□□□ -0.85
CCDC88C-208ENST00000554165 CHRFAM7AQ494W8 412 aa9.76□□□□□ -0.85
CCDC88C-208ENST00000554165 SLC35D3Q5M8T2 416 aa9.76□□□□□ -0.85
CCDC88C-208ENST00000554165 AADACL4Q5VUY2 407 aa9.76□□□□□ -0.85
CCDC88C-208ENST00000554165 PRAMEF6Q5VXH4 476 aa9.76□□□□□ -0.85
CCDC88C-208ENST00000554165 SLC16A9Q7RTY1 509 aa9.76□□□□□ -0.85
CCDC88C-208ENST00000554165 OR56B2PQ8NGI1 322 aa9.76□□□□□ -0.85
CCDC88C-208ENST00000554165 SPRYD4Q8WW59 207 aaPredicted RBP9.76□□□□□ -0.85
CCDC88C-208ENST00000554165 RAB1CQ92928 201 aa9.76□□□□□ -0.85
CCDC88C-208ENST00000554165 SGK3Q96BR1 496 aa9.76□□□□□ -0.85
CCDC88C-208ENST00000554165 OSBPL10Q9BXB5 764 aa9.76□□□□□ -0.85
CCDC88C-208ENST00000554165 GCM1Q9NP62 436 aa9.76□□□□□ -0.85
CCDC88C-208ENST00000554165 UBAP1Q9NZ09 502 aa9.76□□□□□ -0.85
CCDC88C-208ENST00000554165 IL19Q9UHD0 177 aa9.76□□□□□ -0.85
CCDC88C-208ENST00000554165 FBN1P35555 2871 aaKnown RBP9.76□□□□□ -0.85
CCDC88C-208ENST00000554165 B4DSR2 109 aa9.75□□□□□ -0.85
CCDC88C-208ENST00000554165 TMEM178BH3BS89 294 aa9.75□□□□□ -0.85
CCDC88C-208ENST00000554165 EI24O14681 340 aa9.75□□□□□ -0.85
CCDC88C-208ENST00000554165 APOL3O95236 402 aa9.75□□□□□ -0.85
CCDC88C-208ENST00000554165 IGHV2-70P01814 119 aa9.75□□□□□ -0.85
CCDC88C-208ENST00000554165 IGHV2-5P01817 119 aa9.75□□□□□ -0.85
CCDC88C-208ENST00000554165 SLC15A1P46059 708 aa9.75□□□□□ -0.85
CCDC88C-208ENST00000554165 ZMYND11Q15326 602 aa9.75□□□□□ -0.85
CCDC88C-208ENST00000554165 ZIK1Q3SY52 487 aaPredicted RBP9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms