RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 TXNDC15Q96J42 360 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 CCDC115Q96NT0 180 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 ZIM3Q96PE6 472 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 FMO2Q99518 471 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 C1orf50Q9BV19 199 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 EMC6Q9BV81 110 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 RBM38Q9H0Z9 239 aaKnown RBP2.94□□□□□ -1.94
LIMA1-206ENST00000550611 ZNF556Q9HAH1 456 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 C12orf10Q9HB07 376 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 PATZ1Q9HBE1 687 aaKnown RBP2.94□□□□□ -1.94
LIMA1-206ENST00000550611 BEX1Q9HBH7 125 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 PSMC3IPQ9P2W1 217 aaPredicted RBP2.94□□□□□ -1.94
LIMA1-206ENST00000550611 RABL2AQ9UBK7 228 aaPredicted RBP2.94□□□□□ -1.94
LIMA1-206ENST00000550611 HSPB7Q9UBY9 170 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 MARCOQ9UEW3 520 aaPredicted RBP2.94□□□□□ -1.94
LIMA1-206ENST00000550611 BTNL2Q9UIR0 455 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 FBXL3Q9UKT7 428 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 PYCARDQ9ULZ3 195 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 FAM96BQ9Y3D0 163 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 FIS1Q9Y3D6 152 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 STARD9Q9P2P6 4700 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 HUWE1Q7Z6Z7 4374 aaKnown RBP2.94□□□□□ -1.94
LIMA1-206ENST00000550611 A0A087WUJ7 227 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 MDFIC2A0A1B0GVS7 189 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 ZSCAN5BA6NJL1 495 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 SRRM5B3KS81 715 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 PTGES3LE9PB15 166 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 IFNL4K9M1U5 179 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 PLPP3O14495 311 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 AIM2O14862 343 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 AHSA1O95433 338 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 CPSF4O95639 269 aaKnown RBP2.93□□□□□ -1.94
LIMA1-206ENST00000550611 RAB36O95755 333 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 SCGB1D1O95968 90 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 BGLAPP02818 100 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 MMP7P09237 267 aaPredicted RBP2.93□□□□□ -1.94
LIMA1-206ENST00000550611 WNT2P09544 360 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 OR8G3PP0DMU2 310 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 CCL2P13500 99 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 UQCRBP14927 111 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 B4GALT1P15291 398 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 CPT2P23786 658 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 GRPRP30550 384 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 PCGF2P35227 344 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 CAPZA2P47755 286 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 RAG2P55895 527 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 SELENOVP59797 346 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 SEC61A1P61619 476 aaKnown RBP2.93□□□□□ -1.94
LIMA1-206ENST00000550611 COPZ1P61923 177 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 GALK2Q01415 458 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 SLC3A1Q07837 685 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 MAD2L1Q13257 205 aaPredicted RBP2.93□□□□□ -1.94
LIMA1-206ENST00000550611 CAMK2DQ13557 499 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 C1DQ13901 141 aaKnown RBP2.93□□□□□ -1.94
LIMA1-206ENST00000550611 GNA13Q14344 377 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 TAF9Q16594 264 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 DEFB112Q30KQ8 113 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 TMEM155Q4W5P6 130 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 LIN52Q52LA3 116 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 ARMCX4Q5H9R4 360 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 ANXA8L1Q5VT79 327 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 ZNF774Q6NX45 483 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 C8orf74Q6P047 294 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 C5orf46Q6UWT4 87 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 ZNF836Q6ZNA1 936 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 KRT77Q7Z794 578 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 SERPINA11Q86U17 422 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 TBC1D26Q86UD7 250 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 ANKRD46Q86W74 232 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 PEX5LQ8IYB4 626 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 CADM3Q8N126 398 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 CADM2Q8N3J6 435 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 SLC22A24Q8N4F4 322 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 TMEM86BQ8N661 226 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 ZNF283Q8N7M2 679 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 LSMEM1Q8N8F7 131 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 NOA1Q8NC60 698 aaKnown RBP2.93□□□□□ -1.94
LIMA1-206ENST00000550611 SLC30A7Q8NEW0 376 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 OR52E2Q8NGJ4 325 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 LINC01006Q8NI28 216 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 MGARPQ8TDB4 240 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 ST7LQ8TDW4 575 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 C10orf82Q8WW14 230 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 CCL17Q92583 94 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 ELMOD3Q96FG2 381 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 TIMD4Q96H15 378 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 TEX37Q96LM6 180 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 GAL3ST1Q99999 423 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 SLC35A5Q9BS91 424 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 BCL2L14Q9BZR8 327 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 DPY30Q9C005 99 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 NOX4Q9NPH5 578 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 PNRC2Q9NPJ4 139 aaKnown RBP2.93□□□□□ -1.94
LIMA1-206ENST00000550611 SLC6A13Q9NSD5 602 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 DCAF16Q9NXF7 216 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 TBK1Q9UHD2 729 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 A4GNTQ9UNA3 340 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 ZNF443Q9Y2A4 671 aaPredicted RBP2.93□□□□□ -1.94
LIMA1-206ENST00000550611 POFUT2Q9Y2G5 429 aa2.93□□□□□ -1.94
LIMA1-206ENST00000550611 NPTNQ9Y639 398 aa2.93□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms