RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 LINC00346Q8IVM7 164 aa14.65□□□□□ -0.06
CLSTN3-214ENST00000542663 GCSAMQ8N6F7 178 aa14.65□□□□□ -0.06
CLSTN3-214ENST00000542663 SLC7A13Q8TCU3 470 aa14.65□□□□□ -0.06
CLSTN3-214ENST00000542663 DYDC1Q8WWB3 177 aa14.65□□□□□ -0.06
CLSTN3-214ENST00000542663 LZICQ8WZA0 190 aa14.65□□□□□ -0.06
CLSTN3-214ENST00000542663 ADAT1Q9BUB4 502 aaKnown RBP14.65□□□□□ -0.06
CLSTN3-214ENST00000542663 PNRC2Q9NPJ4 139 aaKnown RBP14.65□□□□□ -0.06
CLSTN3-214ENST00000542663 RPUSD1Q9UJJ7 312 aaKnown RBP14.65□□□□□ -0.06
CLSTN3-214ENST00000542663 TRAV38-1A0A0B4J264 116 aa14.64□□□□□ -0.07
CLSTN3-214ENST00000542663 NDUFA2O43678 99 aa14.64□□□□□ -0.07
CLSTN3-214ENST00000542663 TXNDC12O95881 172 aa14.64□□□□□ -0.07
CLSTN3-214ENST00000542663 LCATP04180 440 aa14.64□□□□□ -0.07
CLSTN3-214ENST00000542663 MDH1P40925 334 aaKnown RBP14.64□□□□□ -0.07
CLSTN3-214ENST00000542663 CENPAP49450 140 aa14.64□□□□□ -0.07
CLSTN3-214ENST00000542663 POU4F2Q12837 409 aa14.64□□□□□ -0.07
CLSTN3-214ENST00000542663 TRAP1Q12931 704 aaKnown RBP14.64□□□□□ -0.07
CLSTN3-214ENST00000542663 CDONQ4KMG0 1287 aa14.64□□□□□ -0.07
CLSTN3-214ENST00000542663 METTL21CQ5VZV1 264 aa14.64□□□□□ -0.07
CLSTN3-214ENST00000542663 PGM2L1Q6PCE3 622 aa14.64□□□□□ -0.07
CLSTN3-214ENST00000542663 SLC26A10Q8NG04 563 aa14.64□□□□□ -0.07
CLSTN3-214ENST00000542663 SPRYD4Q8WW59 207 aaPredicted RBP14.64□□□□□ -0.07
CLSTN3-214ENST00000542663 ATF6BQ99941 703 aa14.64□□□□□ -0.07
CLSTN3-214ENST00000542663 B9D1Q9UPM9 204 aa14.64□□□□□ -0.07
CLSTN3-214ENST00000542663 FAM96BQ9Y3D0 163 aa14.64□□□□□ -0.07
CLSTN3-214ENST00000542663 KPTNQ9Y664 436 aa14.64□□□□□ -0.07
CLSTN3-214ENST00000542663 A0A0G2JND7 137 aa14.63□□□□□ -0.07
CLSTN3-214ENST00000542663 A0A1B0GVI7 797 aa14.63□□□□□ -0.07
CLSTN3-214ENST00000542663 A0A1B0GW55 424 aa14.63□□□□□ -0.07
CLSTN3-214ENST00000542663 CD300LBA8K4G0 201 aa14.63□□□□□ -0.07
CLSTN3-214ENST00000542663 PIN1P1O15428 100 aa14.63□□□□□ -0.07
CLSTN3-214ENST00000542663 GMDSO60547 372 aa14.63□□□□□ -0.07
CLSTN3-214ENST00000542663 ECDO95905 644 aaPredicted RBP14.63□□□□□ -0.07
CLSTN3-214ENST00000542663 LHBP01229 141 aa14.63□□□□□ -0.07
CLSTN3-214ENST00000542663 OPN1MWP04001 364 aa14.63□□□□□ -0.07
CLSTN3-214ENST00000542663 DUX4L2P0CJ85 424 aa14.63□□□□□ -0.07
CLSTN3-214ENST00000542663 DUX4L3P0CJ86 424 aa14.63□□□□□ -0.07
CLSTN3-214ENST00000542663 DUX4L4P0CJ87 422 aa14.63□□□□□ -0.07
CLSTN3-214ENST00000542663 DUX4L5P0CJ88 424 aa14.63□□□□□ -0.07
CLSTN3-214ENST00000542663 DUX4L6P0CJ89 424 aa14.63□□□□□ -0.07
CLSTN3-214ENST00000542663 DUX4L7P0CJ90 424 aa14.63□□□□□ -0.07
CLSTN3-214ENST00000542663 OPN1MW2P0DN77 364 aa14.63□□□□□ -0.07
CLSTN3-214ENST00000542663 OPN1MW3P0DN78 364 aa14.63□□□□□ -0.07
CLSTN3-214ENST00000542663 TGFBR2P37173 567 aa14.63□□□□□ -0.07
CLSTN3-214ENST00000542663 ELF3P78545 371 aaPredicted RBP14.63□□□□□ -0.07
CLSTN3-214ENST00000542663 PRB3Q04118 309 aaPredicted RBP14.63□□□□□ -0.07
CLSTN3-214ENST00000542663 MALLQ13021 153 aa14.63□□□□□ -0.07
CLSTN3-214ENST00000542663 C11orf91Q3C1V1 193 aa14.63□□□□□ -0.07
CLSTN3-214ENST00000542663 SLC35E4Q6ICL7 350 aa14.63□□□□□ -0.07
CLSTN3-214ENST00000542663 DUX4L9Q6RFH8 374 aaPredicted RBP14.63□□□□□ -0.07
CLSTN3-214ENST00000542663 METAP1DQ6UB28 335 aaPredicted RBP14.63□□□□□ -0.07
CLSTN3-214ENST00000542663 OR6V1Q8N148 313 aa14.63□□□□□ -0.07
CLSTN3-214ENST00000542663 PLPP7Q8NBV4 271 aa14.63□□□□□ -0.07
CLSTN3-214ENST00000542663 LY6G5BQ8NDX9 201 aa14.63□□□□□ -0.07
CLSTN3-214ENST00000542663 ST8SIA4Q92187 359 aa14.63□□□□□ -0.07
CLSTN3-214ENST00000542663 PITX2Q99697 317 aa14.63□□□□□ -0.07
CLSTN3-214ENST00000542663 NDEL1Q9GZM8 345 aa14.63□□□□□ -0.07
CLSTN3-214ENST00000542663 SLC22A4Q9H015 551 aa14.63□□□□□ -0.07
CLSTN3-214ENST00000542663 ANKRD19PQ9H560 264 aa14.63□□□□□ -0.07
CLSTN3-214ENST00000542663 CNTD2Q9H8S5 307 aa14.63□□□□□ -0.07
CLSTN3-214ENST00000542663 TRIM36Q9NQ86 728 aa14.63□□□□□ -0.07
CLSTN3-214ENST00000542663 C1orf123Q9NWV4 160 aa14.63□□□□□ -0.07
CLSTN3-214ENST00000542663 KAAG1Q9UBP8 84 aa14.63□□□□□ -0.07
CLSTN3-214ENST00000542663 DUX4Q9UBX2 424 aa14.63□□□□□ -0.07
CLSTN3-214ENST00000542663 TMEM5Q9Y2B1 443 aa14.63□□□□□ -0.07
CLSTN3-214ENST00000542663 DNAH3Q8TD57 4116 aa14.63□□□□□ -0.07
CLSTN3-214ENST00000542663 IGHV3OR15-7A0A075B7D8 119 aa14.62□□□□□ -0.07
CLSTN3-214ENST00000542663 EDF1O60869 148 aaKnown RBP14.62□□□□□ -0.07
CLSTN3-214ENST00000542663 FBP1P09467 338 aa14.62□□□□□ -0.07
CLSTN3-214ENST00000542663 CRABP1P29762 137 aa14.62□□□□□ -0.07
CLSTN3-214ENST00000542663 OMPP47874 163 aa14.62□□□□□ -0.07
CLSTN3-214ENST00000542663 DLX1P56177 255 aa14.62□□□□□ -0.07
CLSTN3-214ENST00000542663 ZNF92Q03936 586 aa14.62□□□□□ -0.07
CLSTN3-214ENST00000542663 ECH1Q13011 328 aa14.62□□□□□ -0.07
CLSTN3-214ENST00000542663 FAM189A2Q15884 450 aa14.62□□□□□ -0.07
CLSTN3-214ENST00000542663 SNAI3Q3KNW1 292 aa14.62□□□□□ -0.07
CLSTN3-214ENST00000542663 TEX36Q5VZQ5 186 aa14.62□□□□□ -0.07
CLSTN3-214ENST00000542663 DPY19L2P2Q6ZN68 376 aa14.62□□□□□ -0.07
CLSTN3-214ENST00000542663 RRM2BQ7LG56 351 aa14.62□□□□□ -0.07
CLSTN3-214ENST00000542663 MRPL21Q7Z2W9 205 aaKnown RBP14.62□□□□□ -0.07
CLSTN3-214ENST00000542663 OR2AE1Q8NHA4 323 aa14.62□□□□□ -0.07
CLSTN3-214ENST00000542663 RSRC1Q96IZ7 334 aaKnown RBP14.62□□□□□ -0.07
CLSTN3-214ENST00000542663 ATP6V1G3Q96LB4 118 aa14.62□□□□□ -0.07
CLSTN3-214ENST00000542663 SRA1Q9HD15 236 aaKnown RBP14.62□□□□□ -0.07
CLSTN3-214ENST00000542663 FBLN5Q9UBX5 448 aa14.62□□□□□ -0.07
CLSTN3-214ENST00000542663 CYB5R1Q9UHQ9 305 aa14.62□□□□□ -0.07
CLSTN3-214ENST00000542663 BBIP1A8MTZ0 92 aa14.61□□□□□ -0.07
CLSTN3-214ENST00000542663 RNASEK-C17orf49H0YIS7 233 aa14.61□□□□□ -0.07
CLSTN3-214ENST00000542663 ZNF682O95780 498 aa14.61□□□□□ -0.07
CLSTN3-214ENST00000542663 GGT2P36268 569 aa14.61□□□□□ -0.07
CLSTN3-214ENST00000542663 RPS6KA3P51812 740 aa14.61□□□□□ -0.07
CLSTN3-214ENST00000542663 IFI44LQ53G44 452 aa14.61□□□□□ -0.07
CLSTN3-214ENST00000542663 DNM1P34Q6PK57 102 aa14.61□□□□□ -0.07
CLSTN3-214ENST00000542663 CBLL1Q75N03 491 aa14.61□□□□□ -0.07
CLSTN3-214ENST00000542663 NPRL2Q8WTW4 380 aa14.61□□□□□ -0.07
CLSTN3-214ENST00000542663 MAP6Q96JE9 813 aa14.61□□□□□ -0.07
CLSTN3-214ENST00000542663 SIRT7Q9NRC8 400 aa14.61□□□□□ -0.07
CLSTN3-214ENST00000542663 INTS9Q9NV88 658 aaKnown RBP14.61□□□□□ -0.07
CLSTN3-214ENST00000542663 CMTM6Q9NX76 183 aa14.61□□□□□ -0.07
CLSTN3-214ENST00000542663 ADA2Q9NZK5 511 aa14.61□□□□□ -0.07
CLSTN3-214ENST00000542663 ONECUT1Q9UBC0 465 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms