RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, human

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-209	ENST00000542286	ACY1	Q03154	408 aa		13.12	□□□□□ -0.31
DDX55-209	ENST00000542286	CCDC157	Q569K6	752 aa		13.12	□□□□□ -0.31
DDX55-209	ENST00000542286	ZNF385C	Q66K41	422 aa	Predicted RBP	13.12	□□□□□ -0.31
DDX55-209	ENST00000542286	FAM166A	Q6J272	317 aa		13.12	□□□□□ -0.31
DDX55-209	ENST00000542286	RABEPK	Q7Z6M1	372 aa		13.12	□□□□□ -0.31
DDX55-209	ENST00000542286	PPP1R3B	Q86XI6	285 aa		13.12	□□□□□ -0.31
DDX55-209	ENST00000542286	MUC20	Q8N307	709 aa	Predicted RBP	13.12	□□□□□ -0.31
DDX55-209	ENST00000542286	GVQW1	Q8N7I0	195 aa		13.12	□□□□□ -0.31
DDX55-209	ENST00000542286	OR13C9	Q8NGT0	318 aa		13.12	□□□□□ -0.31
DDX55-209	ENST00000542286	JSRP1	Q96MG2	331 aa	Predicted RBP	13.12	□□□□□ -0.31
DDX55-209	ENST00000542286	TSNAX	Q99598	290 aa	Known RBP	13.12	□□□□□ -0.31
DDX55-209	ENST00000542286	RASL12	Q9NYN1	266 aa		13.12	□□□□□ -0.31
DDX55-209	ENST00000542286	ZNF319	Q9P2F9	582 aa		13.12	□□□□□ -0.31
DDX55-209	ENST00000542286	HHLA2	Q9UM44	414 aa		13.12	□□□□□ -0.31
DDX55-209	ENST00000542286	RER1	O15258	196 aa		13.11	□□□□□ -0.31
DDX55-209	ENST00000542286	SULT1B1	O43704	296 aa		13.11	□□□□□ -0.31
DDX55-209	ENST00000542286	CD2	P06729	351 aa		13.11	□□□□□ -0.31
DDX55-209	ENST00000542286	ABO	P16442	354 aa		13.11	□□□□□ -0.31
DDX55-209	ENST00000542286	PVALB	P20472	110 aa	Predicted RBP	13.11	□□□□□ -0.31
DDX55-209	ENST00000542286	STAR	P49675	285 aa		13.11	□□□□□ -0.31
DDX55-209	ENST00000542286	MECP2	P51608	486 aa	Known RBP	13.11	□□□□□ -0.31
DDX55-209	ENST00000542286	PRSS12	P56730	875 aa		13.11	□□□□□ -0.31
DDX55-209	ENST00000542286	CLDN6	P56747	220 aa		13.11	□□□□□ -0.31
DDX55-209	ENST00000542286	NR0B2	Q15466	257 aa		13.11	□□□□□ -0.31
DDX55-209	ENST00000542286	ZNF528	Q3MIS6	628 aa		13.11	□□□□□ -0.31
DDX55-209	ENST00000542286	COMMD2	Q86X83	199 aa		13.11	□□□□□ -0.31
DDX55-209	ENST00000542286	KMT5C	Q86Y97	462 aa		13.11	□□□□□ -0.31
DDX55-209	ENST00000542286	PUSL1	Q8N0Z8	303 aa	Known RBP	13.11	□□□□□ -0.31
DDX55-209	ENST00000542286	WDSUB1	Q8N9V3	476 aa		13.11	□□□□□ -0.31
DDX55-209	ENST00000542286	TMEM185A	Q8NFB2	350 aa		13.11	□□□□□ -0.31
DDX55-209	ENST00000542286	OR2AK2	Q8NG84	335 aa		13.11	□□□□□ -0.31
DDX55-209	ENST00000542286	MFSD8	Q8NHS3	518 aa		13.11	□□□□□ -0.31
DDX55-209	ENST00000542286	DDIT4L	Q96D03	193 aa		13.11	□□□□□ -0.31
DDX55-209	ENST00000542286	GNRHR2	Q96P88	292 aa		13.11	□□□□□ -0.31
DDX55-209	ENST00000542286	MNT	Q99583	582 aa		13.11	□□□□□ -0.31
DDX55-209	ENST00000542286	CNTD2	Q9H8S5	307 aa		13.11	□□□□□ -0.31
DDX55-209	ENST00000542286	CKLF	Q9UBR5	152 aa		13.11	□□□□□ -0.31
DDX55-209	ENST00000542286	POLR1D	Q9Y2S0	133 aa		13.11	□□□□□ -0.31
DDX55-209	ENST00000542286	IGHM	P01871	453 aa		13.11	□□□□□ -0.31
DDX55-209	ENST00000542286	TTR	P02766	147 aa		13.11	□□□□□ -0.31
DDX55-209	ENST00000542286	OR52W1	Q6IF63	320 aa		13.11	□□□□□ -0.31
DDX55-209	ENST00000542286	FDX2	Q6P4F2	183 aa		13.11	□□□□□ -0.31
DDX55-209	ENST00000542286	NAA40	Q86UY6	237 aa		13.11	□□□□□ -0.31
DDX55-209	ENST00000542286	CD163	Q86VB7	1156 aa		13.11	□□□□□ -0.31
DDX55-209	ENST00000542286	LDLRAD3	Q86YD5	345 aa		13.11	□□□□□ -0.31
DDX55-209	ENST00000542286	CBLN2	Q8IUK8	224 aa		13.11	□□□□□ -0.31
DDX55-209	ENST00000542286	OR51E1	Q8TCB6	317 aa		13.11	□□□□□ -0.31
DDX55-209	ENST00000542286	ST8SIA1	Q92185	356 aa		13.11	□□□□□ -0.31
DDX55-209	ENST00000542286	SEH1L	Q96EE3	360 aa		13.11	□□□□□ -0.31
DDX55-209	ENST00000542286	DEFB126	Q9BYW3	111 aa		13.11	□□□□□ -0.31
DDX55-209	ENST00000542286	TMEM138	Q9NPI0	162 aa		13.11	□□□□□ -0.31
DDX55-209	ENST00000542286	ASH2L	Q9UBL3	628 aa		13.11	□□□□□ -0.31
DDX55-209	ENST00000542286	WIF1	Q9Y5W5	379 aa		13.11	□□□□□ -0.31
DDX55-209	ENST00000542286	RPA2	P15927	270 aa		13.1	□□□□□ -0.31
DDX55-209	ENST00000542286	CNR1	P21554	472 aa		13.1	□□□□□ -0.31
DDX55-209	ENST00000542286	APOBEC1	P41238	236 aa	Known RBP	13.1	□□□□□ -0.31
DDX55-209	ENST00000542286	SCGB2B2	Q4G0G5	96 aa		13.1	□□□□□ -0.31
DDX55-209	ENST00000542286	C11orf88	Q6PI97	169 aa		13.1	□□□□□ -0.31
DDX55-209	ENST00000542286	SLC36A1	Q7Z2H8	476 aa		13.1	□□□□□ -0.31
DDX55-209	ENST00000542286	OIT3	Q8WWZ8	545 aa		13.1	□□□□□ -0.31
DDX55-209	ENST00000542286	CLDN23	Q96B33	292 aa		13.1	□□□□□ -0.31
DDX55-209	ENST00000542286		A0A1W2PP11	408 aa		13.1	□□□□□ -0.31
DDX55-209	ENST00000542286		E9PLN8	166 aa		13.1	□□□□□ -0.31
DDX55-209	ENST00000542286	F10	P00742	488 aa		13.1	□□□□□ -0.31
DDX55-209	ENST00000542286	IGFBP3	P17936	291 aa	Predicted RBP	13.1	□□□□□ -0.31
DDX55-209	ENST00000542286	MNDA	P41218	407 aa		13.1	□□□□□ -0.31
DDX55-209	ENST00000542286	MOB3C	Q70IA8	216 aa		13.1	□□□□□ -0.31
DDX55-209	ENST00000542286	OR1M1	Q8NGA1	313 aa		13.1	□□□□□ -0.31
DDX55-209	ENST00000542286	OR10H5	Q8NGA6	315 aa		13.1	□□□□□ -0.31
DDX55-209	ENST00000542286	NUDCD2	Q8WVJ2	157 aa		13.1	□□□□□ -0.31
DDX55-209	ENST00000542286	ADAT1	Q9BUB4	502 aa	Known RBP	13.1	□□□□□ -0.31
DDX55-209	ENST00000542286	ZNF230	Q9UIE0	474 aa	Predicted RBP	13.1	□□□□□ -0.31
DDX55-209	ENST00000542286	EDAR	Q9UNE0	448 aa		13.1	□□□□□ -0.31
DDX55-209	ENST00000542286	LHFPL6	Q9Y693	200 aa		13.1	□□□□□ -0.31
DDX55-209	ENST00000542286	TRAV20	A0A0B4J274	112 aa		13.09	□□□□□ -0.31
DDX55-209	ENST00000542286		A0A1B0GTQ1	180 aa		13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	KCNJ3	P48549	501 aa		13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	DAP3	P51398	398 aa	Known RBP	13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	CLRN1	P58418	232 aa		13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	SWI5	Q1ZZU3	235 aa		13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	C4orf46	Q504U0	113 aa		13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	GLT8D1	Q68CQ7	371 aa		13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	STEAP1B	Q6NZ63	245 aa		13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	DTX1	Q86Y01	620 aa		13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	CARF	Q8N187	725 aa		13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	CLEC1A	Q8NC01	280 aa		13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	CHST4	Q8NCG5	386 aa		13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	OR1J2	Q8NGS2	313 aa		13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	NUBPL	Q8TB37	319 aa		13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	NPRL2	Q8WTW4	380 aa		13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	TNFAIP8L1	Q8WVP5	186 aa		13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	CMSS1	Q9BQ75	279 aa	Known RBP	13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	EXO5	Q9H790	373 aa		13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	KLK13	Q9UKR3	277 aa		13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	ZFAND5	O76080	213 aa		13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	GP1BA	P07359	652 aa		13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	MGMT	P16455	207 aa		13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	AKR1C2	P52895	323 aa		13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	AKR1C1	Q04828	323 aa		13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	PMPCA	Q10713	525 aa		13.09	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms