RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 GVINP1Q7Z2Y8 2422 aa12.75□□□□□ -0.37
CLIP1-216ENST00000541410 NME2P1O60361 137 aa12.74□□□□□ -0.37
CLIP1-216ENST00000541410 CYTIPO60759 359 aa12.74□□□□□ -0.37
CLIP1-216ENST00000541410 ALDOBP05062 364 aa12.74□□□□□ -0.37
CLIP1-216ENST00000541410 RAB3AP20336 220 aa12.74□□□□□ -0.37
CLIP1-216ENST00000541410 NME2P22392 152 aa12.74□□□□□ -0.37
CLIP1-216ENST00000541410 ZNF133P52736 654 aaPredicted RBP12.74□□□□□ -0.37
CLIP1-216ENST00000541410 SNAI3Q3KNW1 292 aa12.74□□□□□ -0.37
CLIP1-216ENST00000541410 TSPO2Q5TGU0 170 aa12.74□□□□□ -0.37
CLIP1-216ENST00000541410 FOXL2NBQ6ZUU3 175 aa12.74□□□□□ -0.37
CLIP1-216ENST00000541410 RTN4RL2Q86UN3 420 aa12.74□□□□□ -0.37
CLIP1-216ENST00000541410 OR2AE1Q8NHA4 323 aa12.74□□□□□ -0.37
CLIP1-216ENST00000541410 DACT3Q96B18 629 aaPredicted RBP12.74□□□□□ -0.37
CLIP1-216ENST00000541410 NIPAL2Q9H841 368 aa12.74□□□□□ -0.37
CLIP1-216ENST00000541410 PLEKHA1Q9HB21 404 aa12.74□□□□□ -0.37
CLIP1-216ENST00000541410 TMEM138Q9NPI0 162 aa12.74□□□□□ -0.37
CLIP1-216ENST00000541410 TMEM38BQ9NVV0 291 aa12.74□□□□□ -0.37
CLIP1-216ENST00000541410 NOSIPQ9Y314 301 aaKnown RBP12.74□□□□□ -0.37
CLIP1-216ENST00000541410 SMLR1H3BR10 107 aa12.74□□□□□ -0.37
CLIP1-216ENST00000541410 M0R135 149 aa12.74□□□□□ -0.37
CLIP1-216ENST00000541410 ACOT7O00154 380 aa12.74□□□□□ -0.37
CLIP1-216ENST00000541410 ZNF32P17041 273 aa12.74□□□□□ -0.37
CLIP1-216ENST00000541410 FOXG1P55316 489 aaPredicted RBP12.74□□□□□ -0.37
CLIP1-216ENST00000541410 MRPS34P82930 218 aaKnown RBP12.74□□□□□ -0.37
CLIP1-216ENST00000541410 HGFACQ04756 655 aa12.74□□□□□ -0.37
CLIP1-216ENST00000541410 FAM27BQ5VT28 67 aa12.74□□□□□ -0.37
CLIP1-216ENST00000541410 RHOUQ7L0Q8 258 aa12.74□□□□□ -0.37
CLIP1-216ENST00000541410 OR4D10Q8NGI6 311 aa12.74□□□□□ -0.37
CLIP1-216ENST00000541410 OR5D18Q8NGL1 313 aa12.74□□□□□ -0.37
CLIP1-216ENST00000541410 OR8S1Q8NH09 359 aa12.74□□□□□ -0.37
CLIP1-216ENST00000541410 DVL3Q92997 716 aaPredicted RBP12.74□□□□□ -0.37
CLIP1-216ENST00000541410 ZNF799Q96GE5 643 aa12.74□□□□□ -0.37
CLIP1-216ENST00000541410 FOXB1Q99853 325 aa12.74□□□□□ -0.37
CLIP1-216ENST00000541410 ZNF552Q9H707 407 aaPredicted RBP12.74□□□□□ -0.37
CLIP1-216ENST00000541410 EXO5Q9H790 373 aa12.74□□□□□ -0.37
CLIP1-216ENST00000541410 NEK6Q9HC98 313 aa12.74□□□□□ -0.37
CLIP1-216ENST00000541410 RHBDD3Q9Y3P4 386 aa12.74□□□□□ -0.37
CLIP1-216ENST00000541410 TNRC6AQ8NDV7 1962 aaKnown RBP12.74□□□□□ -0.37
CLIP1-216ENST00000541410 MEGF11A6BM72 1044 aa12.73□□□□□ -0.37
CLIP1-216ENST00000541410 SGCEO43556 437 aa12.73□□□□□ -0.37
CLIP1-216ENST00000541410 ZNF708P17019 499 aa12.73□□□□□ -0.37
CLIP1-216ENST00000541410 PCGF3Q3KNV8 242 aa12.73□□□□□ -0.37
CLIP1-216ENST00000541410 HACD4Q5VWC8 232 aa12.73□□□□□ -0.37
CLIP1-216ENST00000541410 LYPD6Q86Y78 171 aa12.73□□□□□ -0.37
CLIP1-216ENST00000541410 INTS12Q96CB8 462 aaKnown RBP12.73□□□□□ -0.37
CLIP1-216ENST00000541410 SORCS2Q96PQ0 1159 aa12.73□□□□□ -0.37
CLIP1-216ENST00000541410 PRRG4Q9BZD6 226 aa12.73□□□□□ -0.37
CLIP1-216ENST00000541410 LDAHQ9H6V9 325 aa12.73□□□□□ -0.37
CLIP1-216ENST00000541410 MOB1AQ9H8S9 216 aa12.73□□□□□ -0.37
CLIP1-216ENST00000541410 KLF13Q9Y2Y9 288 aaPredicted RBP12.73□□□□□ -0.37
CLIP1-216ENST00000541410 MED12LQ86YW9 2145 aa12.73□□□□□ -0.37
CLIP1-216ENST00000541410 A0A096LPE4 126 aa12.73□□□□□ -0.37
CLIP1-216ENST00000541410 A0A1W2PPZ6 126 aa12.73□□□□□ -0.37
CLIP1-216ENST00000541410 SULT1B1O43704 296 aa12.73□□□□□ -0.37
CLIP1-216ENST00000541410 TMEM127O75204 238 aa12.73□□□□□ -0.37
CLIP1-216ENST00000541410 MRPL33O75394 65 aaKnown RBP12.73□□□□□ -0.37
CLIP1-216ENST00000541410 FAHP16930 419 aa12.73□□□□□ -0.37
CLIP1-216ENST00000541410 ZNF93P35789 620 aaPredicted RBP12.73□□□□□ -0.37
CLIP1-216ENST00000541410 PMPCAQ10713 525 aa12.73□□□□□ -0.37
CLIP1-216ENST00000541410 PDSS1Q5T2R2 415 aa12.73□□□□□ -0.37
CLIP1-216ENST00000541410 ADGRE4PQ86SQ3 457 aa12.73□□□□□ -0.37
CLIP1-216ENST00000541410 ANGPTL5Q86XS5 388 aa12.73□□□□□ -0.37
CLIP1-216ENST00000541410 FDCSPQ8NFU4 85 aa12.73□□□□□ -0.37
CLIP1-216ENST00000541410 MS4A3Q96HJ5 214 aa12.73□□□□□ -0.37
CLIP1-216ENST00000541410 OR10A4Q9H209 315 aa12.73□□□□□ -0.37
CLIP1-216ENST00000541410 GPR35Q9HC97 309 aa12.73□□□□□ -0.37
CLIP1-216ENST00000541410 ANKRD20A5PA0PJZ0 165 aa12.72□□□□□ -0.37
CLIP1-216ENST00000541410 KLRC4-KLRK1H3BQV0 150 aa12.72□□□□□ -0.37
CLIP1-216ENST00000541410 WISP2O76076 250 aa12.72□□□□□ -0.37
CLIP1-216ENST00000541410 HCKP08631 526 aa12.72□□□□□ -0.37
CLIP1-216ENST00000541410 CD46P15529 392 aa12.72□□□□□ -0.37
CLIP1-216ENST00000541410 CFPP27918 469 aa12.72□□□□□ -0.37
CLIP1-216ENST00000541410 OR3A4PP47883 348 aa12.72□□□□□ -0.37
CLIP1-216ENST00000541410 UNC119Q13432 240 aa12.72□□□□□ -0.37
CLIP1-216ENST00000541410 ZNF766Q5HY98 468 aa12.72□□□□□ -0.37
CLIP1-216ENST00000541410 C1orf100Q5SVJ3 147 aa12.72□□□□□ -0.37
CLIP1-216ENST00000541410 AWAT2Q6E213 333 aa12.72□□□□□ -0.37
CLIP1-216ENST00000541410 SKA3Q8IX90 412 aa12.72□□□□□ -0.37
CLIP1-216ENST00000541410 OR5AS1Q8N127 324 aa12.72□□□□□ -0.37
CLIP1-216ENST00000541410 PAQR4Q8N4S7 273 aaPredicted RBP12.72□□□□□ -0.37
CLIP1-216ENST00000541410 NKAIN3Q8N8D7 197 aa12.72□□□□□ -0.37
CLIP1-216ENST00000541410 SLC7A10Q9NS82 523 aa12.72□□□□□ -0.37
CLIP1-216ENST00000541410 BOLA1Q9Y3E2 137 aa12.72□□□□□ -0.37
CLIP1-216ENST00000541410 ARHGAP21Q5T5U3 1957 aa12.72□□□□□ -0.37
CLIP1-216ENST00000541410 IGKV1-9A0A0C4DH69 117 aa12.72□□□□□ -0.37
CLIP1-216ENST00000541410 A0A1W2PP11 408 aa12.72□□□□□ -0.37
CLIP1-216ENST00000541410 LOC390937A0A1W2PQ73 354 aa12.72□□□□□ -0.37
CLIP1-216ENST00000541410 TTLL8A6PVC2 850 aa12.72□□□□□ -0.37
CLIP1-216ENST00000541410 RBBP9O75884 186 aa12.72□□□□□ -0.37
CLIP1-216ENST00000541410 HLA-DMAP28067 261 aa12.72□□□□□ -0.37
CLIP1-216ENST00000541410 NOVA1P51513 510 aaKnown RBP12.72□□□□□ -0.37
CLIP1-216ENST00000541410 SCAND1P57086 179 aa12.72□□□□□ -0.37
CLIP1-216ENST00000541410 HIST1H3AP68431 136 aa12.72□□□□□ -0.37
CLIP1-216ENST00000541410 DYRK1AQ13627 763 aa12.72□□□□□ -0.37
CLIP1-216ENST00000541410 ZFP69Q49AA0 526 aa12.72□□□□□ -0.37
CLIP1-216ENST00000541410 HIST2H3PS2Q5TEC6 136 aa12.72□□□□□ -0.37
CLIP1-216ENST00000541410 HIST2H3AQ71DI3 136 aa12.72□□□□□ -0.37
CLIP1-216ENST00000541410 ZNF101Q8IZC7 436 aa12.72□□□□□ -0.37
CLIP1-216ENST00000541410 SLC22A24Q8N4F4 322 aa12.72□□□□□ -0.37
CLIP1-216ENST00000541410 ZBTB8BQ8NAP8 495 aaPredicted RBP12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms