RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 SLX4IPQ5VYV7 408 aa12.72□□□□□ -0.37
UBE3B-212ENST00000540230 PGAP1Q75T13 922 aa12.72□□□□□ -0.37
UBE3B-212ENST00000540230 LINC01356Q8N9X3 169 aa12.72□□□□□ -0.37
UBE3B-212ENST00000540230 OTOSQ8NHW6 89 aa12.72□□□□□ -0.37
UBE3B-212ENST00000540230 CENPNQ96H22 339 aaPredicted RBP12.72□□□□□ -0.37
UBE3B-212ENST00000540230 TMEM160Q9NX00 188 aa12.72□□□□□ -0.37
UBE3B-212ENST00000540230 DNAJC27Q9NZQ0 273 aa12.72□□□□□ -0.37
UBE3B-212ENST00000540230 A0A1B0GWJ7 208 aa12.72□□□□□ -0.37
UBE3B-212ENST00000540230 F5H5P2 479 aa12.72□□□□□ -0.37
UBE3B-212ENST00000540230 EBAG9O00559 213 aa12.72□□□□□ -0.37
UBE3B-212ENST00000540230 MRPL3P09001 348 aaKnown RBP12.72□□□□□ -0.37
UBE3B-212ENST00000540230 TNFSF4P23510 183 aa12.72□□□□□ -0.37
UBE3B-212ENST00000540230 OPRL1P41146 370 aa12.72□□□□□ -0.37
UBE3B-212ENST00000540230 EFNB1P98172 346 aa12.72□□□□□ -0.37
UBE3B-212ENST00000540230 MALLQ13021 153 aa12.72□□□□□ -0.37
UBE3B-212ENST00000540230 SLC35D3Q5M8T2 416 aa12.72□□□□□ -0.37
UBE3B-212ENST00000540230 C12orf73Q69YU5 71 aa12.72□□□□□ -0.37
UBE3B-212ENST00000540230 SHFQ7M4L6 423 aa12.72□□□□□ -0.37
UBE3B-212ENST00000540230 PRSS45Q7RTY3 260 aa12.72□□□□□ -0.37
UBE3B-212ENST00000540230 MRPL21Q7Z2W9 205 aaKnown RBP12.72□□□□□ -0.37
UBE3B-212ENST00000540230 OR13G1Q8NGZ3 307 aa12.72□□□□□ -0.37
UBE3B-212ENST00000540230 ZNF420Q8TAQ5 688 aaPredicted RBP12.72□□□□□ -0.37
UBE3B-212ENST00000540230 MEGF10Q96KG7 1140 aa12.72□□□□□ -0.37
UBE3B-212ENST00000540230 SIGLEC11Q96RL6 698 aa12.72□□□□□ -0.37
UBE3B-212ENST00000540230 REPIN1Q9BWE0 567 aaKnown RBP12.72□□□□□ -0.37
UBE3B-212ENST00000540230 TMEM106BQ9NUM4 274 aa12.72□□□□□ -0.37
UBE3B-212ENST00000540230 ZNF319Q9P2F9 582 aa12.72□□□□□ -0.37
UBE3B-212ENST00000540230 DNHD1Q96M86 4753 aa12.72□□□□□ -0.37
UBE3B-212ENST00000540230 CD300LBA8K4G0 201 aa12.71□□□□□ -0.38
UBE3B-212ENST00000540230 LYNP07948 512 aa12.71□□□□□ -0.38
UBE3B-212ENST00000540230 HSD11B1P28845 292 aa12.71□□□□□ -0.38
UBE3B-212ENST00000540230 MMP16P51512 607 aa12.71□□□□□ -0.38
UBE3B-212ENST00000540230 GRB2P62993 217 aaKnown RBP12.71□□□□□ -0.38
UBE3B-212ENST00000540230 CHRFAM7AQ494W8 412 aa12.71□□□□□ -0.38
UBE3B-212ENST00000540230 TCEANCQ8N8B7 351 aa12.71□□□□□ -0.38
UBE3B-212ENST00000540230 THEM6Q8WUY1 208 aa12.71□□□□□ -0.38
UBE3B-212ENST00000540230 DVL3Q92997 716 aaPredicted RBP12.71□□□□□ -0.38
UBE3B-212ENST00000540230 TEAD3Q99594 435 aa12.71□□□□□ -0.38
UBE3B-212ENST00000540230 ZNF665Q9H7R5 613 aa12.71□□□□□ -0.38
UBE3B-212ENST00000540230 GCM1Q9NP62 436 aa12.71□□□□□ -0.38
UBE3B-212ENST00000540230 PPP1R3CQ9UQK1 317 aa12.71□□□□□ -0.38
UBE3B-212ENST00000540230 ARHGAP32A7KAX9 2087 aa12.7□□□□□ -0.38
UBE3B-212ENST00000540230 ISPDA4D126 451 aa12.7□□□□□ -0.38
UBE3B-212ENST00000540230 PRR32B1ATL7 298 aa12.7□□□□□ -0.38
UBE3B-212ENST00000540230 TBX1O43435 398 aa12.7□□□□□ -0.38
UBE3B-212ENST00000540230 IGHV2-70P01814 119 aa12.7□□□□□ -0.38
UBE3B-212ENST00000540230 IGHV2-5P01817 119 aa12.7□□□□□ -0.38
UBE3B-212ENST00000540230 ANXA2P07355 339 aaKnown RBP12.7□□□□□ -0.38
UBE3B-212ENST00000540230 TNFRSF1AP19438 455 aa12.7□□□□□ -0.38
UBE3B-212ENST00000540230 SLC15A1P46059 708 aa12.7□□□□□ -0.38
UBE3B-212ENST00000540230 ZNF121P58317 390 aaPredicted RBP12.7□□□□□ -0.38
UBE3B-212ENST00000540230 MAB21L1Q13394 359 aa12.7□□□□□ -0.38
UBE3B-212ENST00000540230 CR1LQ2VPA4 569 aa12.7□□□□□ -0.38
UBE3B-212ENST00000540230 FAM120AOSQ5T036 256 aa12.7□□□□□ -0.38
UBE3B-212ENST00000540230 LRRN1Q6UXK5 716 aa12.7□□□□□ -0.38
UBE3B-212ENST00000540230 RFLNBQ8N5W9 214 aa12.7□□□□□ -0.38
UBE3B-212ENST00000540230 RAB1CQ92928 201 aa12.7□□□□□ -0.38
UBE3B-212ENST00000540230 TIMD4Q96H15 378 aa12.7□□□□□ -0.38
UBE3B-212ENST00000540230 OSBPL10Q9BXB5 764 aa12.7□□□□□ -0.38
UBE3B-212ENST00000540230 TEX12Q9BXU0 123 aa12.7□□□□□ -0.38
UBE3B-212ENST00000540230 TTTY10Q9BZA0 68 aa12.7□□□□□ -0.38
UBE3B-212ENST00000540230 TOR3AQ9H497 397 aa12.7□□□□□ -0.38
UBE3B-212ENST00000540230 BRD7Q9NPI1 651 aa12.7□□□□□ -0.38
UBE3B-212ENST00000540230 TMEM100Q9NV29 134 aa12.7□□□□□ -0.38
UBE3B-212ENST00000540230 CDC42EP3Q9UKI2 254 aa12.7□□□□□ -0.38
UBE3B-212ENST00000540230 COPS3Q9UNS2 423 aa12.7□□□□□ -0.38
UBE3B-212ENST00000540230 NPTNQ9Y639 398 aa12.7□□□□□ -0.38
UBE3B-212ENST00000540230 B4DSR2 109 aa12.69□□□□□ -0.38
UBE3B-212ENST00000540230 PSMD9O00233 223 aa12.69□□□□□ -0.38
UBE3B-212ENST00000540230 H2BFMP0C1H6 154 aa12.69□□□□□ -0.38
UBE3B-212ENST00000540230 ALOX5APP20292 161 aa12.69□□□□□ -0.38
UBE3B-212ENST00000540230 CA6P23280 308 aa12.69□□□□□ -0.38
UBE3B-212ENST00000540230 PMELP40967 661 aa12.69□□□□□ -0.38
UBE3B-212ENST00000540230 HOXA4Q00056 320 aaPredicted RBP12.69□□□□□ -0.38
UBE3B-212ENST00000540230 AADACL4Q5VUY2 407 aa12.69□□□□□ -0.38
UBE3B-212ENST00000540230 FAM57BQ71RH2 274 aa12.69□□□□□ -0.38
UBE3B-212ENST00000540230 SLC16A9Q7RTY1 509 aa12.69□□□□□ -0.38
UBE3B-212ENST00000540230 OR56B2PQ8NGI1 322 aa12.69□□□□□ -0.38
UBE3B-212ENST00000540230 SPRYD4Q8WW59 207 aaPredicted RBP12.69□□□□□ -0.38
UBE3B-212ENST00000540230 SPSB4Q96A44 273 aa12.69□□□□□ -0.38
UBE3B-212ENST00000540230 SGK3Q96BR1 496 aa12.69□□□□□ -0.38
UBE3B-212ENST00000540230 IL4I1Q96RQ9 567 aa12.69□□□□□ -0.38
UBE3B-212ENST00000540230 GAL3ST1Q99999 423 aa12.69□□□□□ -0.38
UBE3B-212ENST00000540230 GABARAPL3Q9BY60 117 aa12.69□□□□□ -0.38
UBE3B-212ENST00000540230 SHARPINQ9H0F6 387 aa12.69□□□□□ -0.38
UBE3B-212ENST00000540230 RIBC2Q9H4K1 309 aa12.69□□□□□ -0.38
UBE3B-212ENST00000540230 UBAP1Q9NZ09 502 aa12.69□□□□□ -0.38
UBE3B-212ENST00000540230 GGT3PA6NGU5 568 aa12.68□□□□□ -0.38
UBE3B-212ENST00000540230 TMEM178BH3BS89 294 aa12.68□□□□□ -0.38
UBE3B-212ENST00000540230 ZNF205O95201 554 aa12.68□□□□□ -0.38
UBE3B-212ENST00000540230 CYB5R3P00387 301 aaPredicted RBP12.68□□□□□ -0.38
UBE3B-212ENST00000540230 MSMBP08118 114 aa12.68□□□□□ -0.38
UBE3B-212ENST00000540230 DVL1P1P54792 670 aaPredicted RBP12.68□□□□□ -0.38
UBE3B-212ENST00000540230 FAM3AP98173 230 aa12.68□□□□□ -0.38
UBE3B-212ENST00000540230 SLC3A1Q07837 685 aa12.68□□□□□ -0.38
UBE3B-212ENST00000540230 ZMYND11Q15326 602 aa12.68□□□□□ -0.38
UBE3B-212ENST00000540230 PRAMEF6Q5VXH4 476 aa12.68□□□□□ -0.38
UBE3B-212ENST00000540230 RHOUQ7L0Q8 258 aa12.68□□□□□ -0.38
UBE3B-212ENST00000540230 MOGAT3Q86VF5 341 aa12.68□□□□□ -0.38
UBE3B-212ENST00000540230 ZNF454Q8N9F8 522 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms