RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 ZNF829Q3KNS6 432 aaPredicted RBP1.62□□□□□ -2.15
CD44-238ENST00000534296 RTL4Q6ZR62 310 aa1.62□□□□□ -2.15
CD44-238ENST00000534296 ERO1BQ86YB8 467 aa1.62□□□□□ -2.15
CD44-238ENST00000534296 OFCC1Q8IZS5 231 aa1.62□□□□□ -2.15
CD44-238ENST00000534296 LRRC52Q8N7C0 313 aa1.62□□□□□ -2.15
CD44-238ENST00000534296 OR4K5Q8NGD3 323 aa1.62□□□□□ -2.15
CD44-238ENST00000534296 LINC01560Q8TB33 94 aa1.62□□□□□ -2.15
CD44-238ENST00000534296 AGR3Q8TD06 166 aa1.62□□□□□ -2.15
CD44-238ENST00000534296 RTN4IP1Q8WWV3 396 aaPredicted RBP1.62□□□□□ -2.15
CD44-238ENST00000534296 CDS1Q92903 461 aa1.62□□□□□ -2.15
CD44-238ENST00000534296 ZNF488Q96MN9 340 aa1.62□□□□□ -2.15
CD44-238ENST00000534296 CDX2Q99626 313 aaPredicted RBP1.62□□□□□ -2.15
CD44-238ENST00000534296 C1orf50Q9BV19 199 aa1.62□□□□□ -2.15
CD44-238ENST00000534296 TOLLIPQ9H0E2 274 aa1.62□□□□□ -2.15
CD44-238ENST00000534296 NCOR1P1Q9H4R4 102 aa1.62□□□□□ -2.15
CD44-238ENST00000534296 EXOSC4Q9NPD3 245 aaKnown RBP1.62□□□□□ -2.15
CD44-238ENST00000534296 DYRK4Q9NR20 520 aa1.62□□□□□ -2.15
CD44-238ENST00000534296 RGS18Q9NS28 235 aa1.62□□□□□ -2.15
CD44-238ENST00000534296 TBC1D24Q9ULP9 559 aa1.62□□□□□ -2.15
CD44-238ENST00000534296 ZNF835Q9Y2P0 537 aa1.62□□□□□ -2.15
CD44-238ENST00000534296 PALLDQ8WX93 1383 aa1.61□□□□□ -2.15
CD44-238ENST00000534296 KCNE1BA0A087WTH5 132 aa1.61□□□□□ -2.15
CD44-238ENST00000534296 NCF1BA6NI72 391 aaPredicted RBP1.61□□□□□ -2.15
CD44-238ENST00000534296 ZNF850A8MQ14 1090 aa1.61□□□□□ -2.15
CD44-238ENST00000534296 NCF1CA8MVU1 366 aaPredicted RBP1.61□□□□□ -2.15
CD44-238ENST00000534296 H0YC42 278 aa1.61□□□□□ -2.15
CD44-238ENST00000534296 H0YIV9 168 aa1.61□□□□□ -2.15
CD44-238ENST00000534296 DNASE2O00115 360 aaPredicted RBP1.61□□□□□ -2.15
CD44-238ENST00000534296 GABRPO00591 440 aa1.61□□□□□ -2.15
CD44-238ENST00000534296 CASC3O15234 703 aaKnown RBP1.61□□□□□ -2.15
CD44-238ENST00000534296 RAD1O60671 282 aa1.61□□□□□ -2.15
CD44-238ENST00000534296 MPDU1O75352 247 aa1.61□□□□□ -2.15
CD44-238ENST00000534296 GCM2O75603 506 aaPredicted RBP1.61□□□□□ -2.15
CD44-238ENST00000534296 REM1O75628 298 aa1.61□□□□□ -2.15
CD44-238ENST00000534296 FARS2O95363 451 aaKnown RBP1.61□□□□□ -2.15
CD44-238ENST00000534296 ZNF286BP0CG31 522 aa1.61□□□□□ -2.15
CD44-238ENST00000534296 GFAPP14136 432 aa1.61□□□□□ -2.15
CD44-238ENST00000534296 ATF6P18850 670 aa1.61□□□□□ -2.15
CD44-238ENST00000534296 ME2P23368 584 aa1.61□□□□□ -2.15
CD44-238ENST00000534296 PFN2P35080 140 aa1.61□□□□□ -2.15
CD44-238ENST00000534296 SLC11A1P49279 550 aa1.61□□□□□ -2.15
CD44-238ENST00000534296 KRTAP10-10P60014 251 aa1.61□□□□□ -2.15
CD44-238ENST00000534296 SEMG2Q02383 582 aa1.61□□□□□ -2.15
CD44-238ENST00000534296 PRSS8Q16651 343 aa1.61□□□□□ -2.15
CD44-238ENST00000534296 C1orf185Q5T7R7 199 aa1.61□□□□□ -2.15
CD44-238ENST00000534296 SAXO2Q658L1 398 aa1.61□□□□□ -2.15
CD44-238ENST00000534296 H3F3CQ6NXT2 135 aa1.61□□□□□ -2.15
CD44-238ENST00000534296 ULK3Q6PHR2 472 aa1.61□□□□□ -2.15
CD44-238ENST00000534296 Q6ZSR6 202 aa1.61□□□□□ -2.15
CD44-238ENST00000534296 VTCN1Q7Z7D3 282 aa1.61□□□□□ -2.15
CD44-238ENST00000534296 HMGN2P46Q86SG4 172 aa1.61□□□□□ -2.15
CD44-238ENST00000534296 WDR86Q86TI4 376 aa1.61□□□□□ -2.15
CD44-238ENST00000534296 PQLC3Q8N755 202 aa1.61□□□□□ -2.15
CD44-238ENST00000534296 GPR26Q8NDV2 337 aa1.61□□□□□ -2.15
CD44-238ENST00000534296 C19orf18Q8NEA5 215 aa1.61□□□□□ -2.15
CD44-238ENST00000534296 TTLQ8NG68 377 aa1.61□□□□□ -2.15
CD44-238ENST00000534296 OR10AD1Q8NGE0 317 aa1.61□□□□□ -2.15
CD44-238ENST00000534296 OR5T3Q8NGG3 340 aa1.61□□□□□ -2.15
CD44-238ENST00000534296 OR1S1Q8NH92 325 aa1.61□□□□□ -2.15
CD44-238ENST00000534296 ASZ1Q8WWH4 475 aa1.61□□□□□ -2.15
CD44-238ENST00000534296 ING5Q8WYH8 240 aa1.61□□□□□ -2.15
CD44-238ENST00000534296 TMEM159Q96B96 161 aa1.61□□□□□ -2.15
CD44-238ENST00000534296 OPALINQ96PE5 141 aa1.61□□□□□ -2.15
CD44-238ENST00000534296 KCNS3Q9BQ31 491 aa1.61□□□□□ -2.15
CD44-238ENST00000534296 RSPO3Q9BXY4 272 aaPredicted RBP1.61□□□□□ -2.15
CD44-238ENST00000534296 SLIRPQ9GZT3 109 aaKnown RBP1.61□□□□□ -2.15
CD44-238ENST00000534296 BLZF1Q9H2G9 400 aa1.61□□□□□ -2.15
CD44-238ENST00000534296 SLC38A10Q9HBR0 1119 aa1.61□□□□□ -2.15
CD44-238ENST00000534296 MRPS30Q9NP92 439 aaKnown RBP1.61□□□□□ -2.15
CD44-238ENST00000534296 LZTFL1Q9NQ48 299 aa1.61□□□□□ -2.15
CD44-238ENST00000534296 PDP1Q9P0J1 537 aaPredicted RBP1.61□□□□□ -2.15
CD44-238ENST00000534296 RFNGQ9Y644 331 aa1.61□□□□□ -2.15
CD44-238ENST00000534296 PLA2R1Q13018 1463 aa1.61□□□□□ -2.15
CD44-238ENST00000534296 IGLV3-12A0A075B6K2 115 aa1.6□□□□□ -2.15
CD44-238ENST00000534296 IGKV1D-17A0A075B6S4 117 aa1.6□□□□□ -2.15
CD44-238ENST00000534296 SMIM26A0A096LP01 95 aa1.6□□□□□ -2.15
CD44-238ENST00000534296 IGLV1-36A0A0B4J1U3 117 aa1.6□□□□□ -2.15
CD44-238ENST00000534296 NCBP2LA6PVI3 153 aaKnown RBP1.6□□□□□ -2.15
CD44-238ENST00000534296 CENPBD1B2RD01 187 aa1.6□□□□□ -2.15
CD44-238ENST00000534296 ANKRD65E5RJM6 399 aa1.6□□□□□ -2.15
CD44-238ENST00000534296 H7C1H1 209 aa1.6□□□□□ -2.15
CD44-238ENST00000534296 NME4O00746 187 aa1.6□□□□□ -2.15
CD44-238ENST00000534296 TAAR5O14804 337 aa1.6□□□□□ -2.15
CD44-238ENST00000534296 BCKDKO14874 412 aa1.6□□□□□ -2.15
CD44-238ENST00000534296 MYL12BO14950 172 aa1.6□□□□□ -2.15
CD44-238ENST00000534296 POLR1CO15160 346 aaPredicted RBP1.6□□□□□ -2.15
CD44-238ENST00000534296 PLIN3O60664 434 aa1.6□□□□□ -2.15
CD44-238ENST00000534296 CD160O95971 181 aa1.6□□□□□ -2.15
CD44-238ENST00000534296 CYB5R3P00387 301 aaPredicted RBP1.6□□□□□ -2.15
CD44-238ENST00000534296 IGLV3-19P01714 112 aa1.6□□□□□ -2.15
CD44-238ENST00000534296 IGHV3-11P01762 117 aa1.6□□□□□ -2.15
CD44-238ENST00000534296 HLA-DQB1P01920 261 aa1.6□□□□□ -2.15
CD44-238ENST00000534296 ASGR1P07306 291 aa1.6□□□□□ -2.15
CD44-238ENST00000534296 CTSLP07711 333 aa1.6□□□□□ -2.15
CD44-238ENST00000534296 OR8U9P0C7N5 309 aa1.6□□□□□ -2.15
CD44-238ENST00000534296 LINC00869P0C866 280 aa1.6□□□□□ -2.15
CD44-238ENST00000534296 APLNRP35414 380 aa1.6□□□□□ -2.15
CD44-238ENST00000534296 BCAP31P51572 246 aa1.6□□□□□ -2.15
CD44-238ENST00000534296 UBE2MP61081 183 aaKnown RBP1.6□□□□□ -2.15
CD44-238ENST00000534296 DMC1Q14565 340 aa1.6□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms