RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 METTL21CQ5VZV1 264 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 C3orf33Q6P1S2 294 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 EMBQ6PCB8 327 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 DNM1P34Q6PK57 102 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 ATRAIDQ6UW56 229 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 OR4N5Q8IXE1 308 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 FAM71AQ8IYT1 594 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 STPG2Q8N412 459 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 KIR3DL3Q8N743 410 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 C15orf54Q8N8G6 183 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 LFNGQ8NES3 379 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 OR9Q2Q8NGE9 314 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 OR2D3Q8NGH3 330 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 OR52H1Q8NGJ2 320 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 OR10G7Q8NGN6 311 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 DYNC2LI1Q8TCX1 351 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 CXorf40AQ8TE69 158 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 FAM172AQ8WUF8 416 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 YIPF6Q96EC8 236 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 SDSLQ96GA7 329 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 EBNA1BP2Q99848 306 aaKnown RBP3.88□□□□□ -1.79
CD44-220ENST00000525688 GLIPR2Q9H4G4 154 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 PLGRKTQ9HBL7 147 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 C12orf4Q9NQ89 552 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 DIABLOQ9NR28 239 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 RHBDL2Q9NX52 303 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 GALPQ9UBC7 116 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 UBQLN1Q9UMX0 589 aaKnown RBP3.88□□□□□ -1.79
CD44-220ENST00000525688 GUCA1BQ9UMX6 200 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 TFR2Q9UP52 801 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 ERGIC3Q9Y282 383 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 DHRS7Q9Y394 339 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 MRPS18CQ9Y3D5 142 aaKnown RBP3.88□□□□□ -1.79
CD44-220ENST00000525688 OARD1Q9Y530 152 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 STYXL1Q9Y6J8 313 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 NRCAMQ92823 1304 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 DOCK5Q9H7D0 1870 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 A0A0A6YYD5 115 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 IGHV3-20A0A0C4DH32 117 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 A0A1B0GVI7 797 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 TVP23AA6NH52 213 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 C9J4A7 227 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 H3BNH8 94 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 K7EQD1 137 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 M0QZ92 97 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 EI24O14681 340 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 OR7A10O76100 309 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 NXPH4O95158 308 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 CLDN1O95832 211 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 RPLP0P05388 317 aaKnown RBP3.87□□□□□ -1.79
CD44-220ENST00000525688 CDK1P06493 297 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 ZNF35P13682 527 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 HOXB6P17509 224 aaKnown RBP3.87□□□□□ -1.79
CD44-220ENST00000525688 ME2P23368 584 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 LEPP41159 167 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 XCR1P46094 333 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 ZFP36L2P47974 494 aaKnown RBP3.87□□□□□ -1.79
CD44-220ENST00000525688 EMDP50402 254 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 UGT2B15P54855 530 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 CCL23P55773 120 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 RPL27P61353 136 aaKnown RBP3.87□□□□□ -1.79
CD44-220ENST00000525688 ERVK-16P61578 105 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 SLC35B1P78383 322 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 RAB40BQ12829 278 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 NDUFA9Q16795 377 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 DGUOKQ16854 277 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 PGGHGQ32M88 737 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 TRMT5Q32P41 509 aaKnown RBP3.87□□□□□ -1.79
CD44-220ENST00000525688 CHRFAM7AQ494W8 412 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 ZNF658BQ4V348 819 aaPredicted RBP3.87□□□□□ -1.79
CD44-220ENST00000525688 ZCWPW2Q504Y3 356 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 ACTL10Q5JWF8 245 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 ANKRD26P1Q6NSI1 321 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 FAHD2BQ6P2I3 314 aaPredicted RBP3.87□□□□□ -1.79
CD44-220ENST00000525688 DRAM2Q6UX65 266 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 CCDC121Q6ZUS5 278 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 TSEN54Q7Z6J9 526 aaKnown RBP3.87□□□□□ -1.79
CD44-220ENST00000525688 CALHM1Q8IU99 346 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 ZNF547Q8IVP9 402 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 NAXDQ8IW45 347 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 OR2L13Q8N349 312 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 RIBC1Q8N443 379 aaPredicted RBP3.87□□□□□ -1.79
CD44-220ENST00000525688 LRRC52Q8N7C0 313 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 GVQW1Q8N7I0 195 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 ZSCAN4Q8NAM6 433 aaPredicted RBP3.87□□□□□ -1.79
CD44-220ENST00000525688 ACBD4Q8NC06 268 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 NUP37Q8NFH4 326 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 VN1R2Q8NFZ6 395 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 OR1S2Q8NGQ3 325 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 OR10Z1Q8NGY1 313 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 OR2V1Q8NHB1 315 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 ITFG1Q8TB96 612 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 BLOC1S5Q8TDH9 187 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 NEK7Q8TDX7 302 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 DYDC1Q8WWB3 177 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 OR8D1Q8WZ84 308 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 FAHD2AQ96GK7 314 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 NOL4LQ96MY1 436 aaPredicted RBP3.87□□□□□ -1.79
CD44-220ENST00000525688 SYT15Q9BQS2 421 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 COPS4Q9BT78 406 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms