RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 ZNF546Q86UE3 836 aa14.3□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 ZNF584Q8IVC4 421 aa14.3□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 OR52N4Q8NGI2 321 aa14.3□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 OR10S1Q8NGN2 331 aa14.3□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 ST8SIA2Q92186 375 aa14.3□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 NKD1Q969G9 470 aa14.3□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 CHST11Q9NPF2 352 aa14.3□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 SLC2A8Q9NY64 477 aa14.3□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 ABCD4O14678 606 aa14.3□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 DUX1O43812 170 aa14.3□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 EFNA2O43921 213 aa14.3□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 CSN2P05814 226 aa14.3□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 BDKRB2P30411 391 aa14.3□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 APOBEC1P41238 236 aaKnown RBP14.3□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 C17orf67Q0P5P2 114 aa14.3□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 NKPD1Q17RQ9 610 aa14.3□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 HSD17B13Q7Z5P4 300 aaPredicted RBP14.3□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 PDZD9Q8IXQ8 264 aa14.3□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 BEST3Q8N1M1 668 aa14.3□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 STPG2Q8N412 459 aa14.3□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 GVQW1Q8N7I0 195 aa14.3□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 NFAM1Q8NET5 270 aaPredicted RBP14.3□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 OR5T2Q8NGG2 359 aa14.3□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 C11orf40Q8WZ69 217 aa14.3□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 ADAT3Q96EY9 351 aaPredicted RBP14.3□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 WDR13Q9H1Z4 485 aa14.3□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 FGF21Q9NSA1 209 aa14.3□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 KLHL13Q9P2N7 655 aa14.3□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 SESN1Q9Y6P5 492 aa14.3□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 OR5H14A6NHG9 310 aa14.29□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 SHISA8B8ZZ34 492 aa14.29□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 KRBOX1C9JBD0 128 aa14.29□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 SMAD9O15198 467 aaKnown RBP14.29□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 LIPCP11150 499 aa14.29□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 ZBTB25P24278 435 aa14.29□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 MPZP25189 248 aa14.29□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 HSD11B1P28845 292 aa14.29□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 CD34P28906 385 aa14.29□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 MPLP40238 635 aa14.29□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 TLE3Q04726 772 aa14.29□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 FOXF1Q12946 379 aa14.29□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 SLC22A6Q4U2R8 563 aa14.29□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 CD163Q86VB7 1156 aa14.29□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 SLC25A42Q86VD7 318 aa14.29□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 HIST2H2ABQ8IUE6 130 aaPredicted RBP14.29□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 EIF4E3Q8N5X7 224 aaKnown RBP14.29□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 THAP3Q8WTV1 239 aaPredicted RBP14.29□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 SGK3Q96BR1 496 aa14.29□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 SLAMF6Q96DU3 332 aa14.29□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 EMC6Q9BV81 110 aa14.29□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 SAV1Q9H4B6 383 aaPredicted RBP14.29□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 PTGES2Q9H7Z7 377 aa14.29□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 HPF1Q9NWY4 346 aa14.29□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 MBD2Q9UBB5 411 aa14.29□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 GPR160Q9UJ42 338 aa14.29□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 VDAC3Q9Y277 283 aa14.29□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 DISC1C4P0D8 188 aa14.29□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 MGMTP16455 207 aa14.29□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 SPEM2Q0P670 501 aa14.29□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 MEF2DQ14814 521 aa14.29□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 HLA-BQ31612 363 aa14.29□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 ZNF528Q3MIS6 628 aa14.29□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 TRAPPC6BQ86SZ2 158 aa14.29□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 CCDC36Q8IYA8 594 aa14.29□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 RELL2Q8NC24 303 aaPredicted RBP14.29□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 STT3BQ8TCJ2 826 aa14.29□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 ZC3H10Q96K80 434 aaKnown RBP14.29□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 MS4A7Q9GZW8 240 aaPredicted RBP14.29□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 GAREM1Q9H706 876 aa14.29□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 METTL21EPA6NDL7 271 aa14.28□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 LIPT2A6NK58 231 aa14.28□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 TMEM200CA6NKL6 621 aa14.28□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 CCSO14618 274 aa14.28□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 ZNF208O43345 1280 aa14.28□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 HLA-AP01891 365 aaKnown RBP14.28□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 VSIG8P0DPA2 414 aa14.28□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 BIDP55957 195 aa14.28□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 CXADRP78310 365 aa14.28□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 SHBQ15464 509 aa14.28□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 CDNFQ49AH0 187 aa14.28□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 OR52W1Q6IF63 320 aa14.28□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 RAB12Q6IQ22 244 aa14.28□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 JMJD6Q6NYC1 403 aaPredicted RBP14.28□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 C3orf33Q6P1S2 294 aa14.28□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 RNF144BQ7Z419 303 aa14.28□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 RTN4RL2Q86UN3 420 aa14.28□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 KCNRGQ8N5I3 272 aa14.28□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 OR1M1Q8NGA1 313 aa14.28□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 ZBTB8AQ96BR9 441 aa14.28□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 TGIF2Q9GZN2 237 aa14.28□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 PBOV1Q9GZY1 135 aa14.28□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 CST11Q9H112 138 aa14.28□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 B3GAT1Q9P2W7 334 aa14.28□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 CYB5R1Q9UHQ9 305 aa14.28□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 TNFSF18Q9UNG2 199 aa14.28□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 ZFHX4Q86UP3 3567 aa14.28□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 A0A0D9SG52 128 aa14.27□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 D6RAR5 112 aa14.27□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 SSX5O60225 188 aa14.27□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 SLC34A2O95436 690 aa14.27□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms