RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 LOXP28300 417 aaPredicted RBP1.75□□□□□ -2.13
VPS50-219ENST00000495039 HMOX2P30519 316 aa1.75□□□□□ -2.13
VPS50-219ENST00000495039 TAS2R46P59540 309 aa1.75□□□□□ -2.13
VPS50-219ENST00000495039 CALHM3Q86XJ0 350 aa1.75□□□□□ -2.13
VPS50-219ENST00000495039 GABRG1Q8N1C3 465 aa1.75□□□□□ -2.13
VPS50-219ENST00000495039 MIR7-3HGQ8N6C7 128 aa1.75□□□□□ -2.13
VPS50-219ENST00000495039 TMEM105Q8N8V8 129 aa1.75□□□□□ -2.13
VPS50-219ENST00000495039 GPR26Q8NDV2 337 aa1.75□□□□□ -2.13
VPS50-219ENST00000495039 SLIRPQ9GZT3 109 aaKnown RBP1.75□□□□□ -2.13
VPS50-219ENST00000495039 SLC39A1Q9NY26 324 aa1.75□□□□□ -2.13
VPS50-219ENST00000495039 C21orf62Q9NYP8 219 aa1.75□□□□□ -2.13
VPS50-219ENST00000495039 GCNT4Q9P109 453 aa1.75□□□□□ -2.13
VPS50-219ENST00000495039 SLC17A7Q9P2U7 560 aa1.75□□□□□ -2.13
VPS50-219ENST00000495039 RABL2BQ9UNT1 228 aa1.75□□□□□ -2.13
VPS50-219ENST00000495039 SCN1AP35498 2009 aa1.74□□□□□ -2.13
VPS50-219ENST00000495039 TNFRSF11BO00300 401 aa1.74□□□□□ -2.13
VPS50-219ENST00000495039 CYB5R3P00387 301 aaPredicted RBP1.74□□□□□ -2.13
VPS50-219ENST00000495039 HBE1P02100 147 aa1.74□□□□□ -2.13
VPS50-219ENST00000495039 ERCC1P07992 297 aaPredicted RBP1.74□□□□□ -2.13
VPS50-219ENST00000495039 CLTAP09496 248 aa1.74□□□□□ -2.13
VPS50-219ENST00000495039 USF1P22415 310 aaPredicted RBP1.74□□□□□ -2.13
VPS50-219ENST00000495039 MYL9P24844 172 aa1.74□□□□□ -2.13
VPS50-219ENST00000495039 RAB7AP51149 207 aa1.74□□□□□ -2.13
VPS50-219ENST00000495039 PPIDQ08752 370 aaKnown RBP1.74□□□□□ -2.13
VPS50-219ENST00000495039 FUT5Q11128 374 aa1.74□□□□□ -2.13
VPS50-219ENST00000495039 SLC39A6Q13433 755 aa1.74□□□□□ -2.13
VPS50-219ENST00000495039 PNOCQ13519 176 aa1.74□□□□□ -2.13
VPS50-219ENST00000495039 TEX30Q5JUR7 227 aa1.74□□□□□ -2.13
VPS50-219ENST00000495039 FAM222AQ5U5X8 452 aa1.74□□□□□ -2.13
VPS50-219ENST00000495039 TWF2Q6IBS0 349 aaKnown RBP1.74□□□□□ -2.13
VPS50-219ENST00000495039 BZW1Q7L1Q6 419 aaKnown RBP1.74□□□□□ -2.13
VPS50-219ENST00000495039 EIF3MQ7L2H7 374 aaKnown RBP1.74□□□□□ -2.13
VPS50-219ENST00000495039 SSX9Q7RTT3 188 aa1.74□□□□□ -2.13
VPS50-219ENST00000495039 CBLN2Q8IUK8 224 aa1.74□□□□□ -2.13
VPS50-219ENST00000495039 ST20-AS1Q8NBB2 130 aa1.74□□□□□ -2.13
VPS50-219ENST00000495039 APCDD1LQ8NCL9 501 aa1.74□□□□□ -2.13
VPS50-219ENST00000495039 OR1J4Q8NGS1 313 aa1.74□□□□□ -2.13
VPS50-219ENST00000495039 HAUS1Q96CS2 278 aa1.74□□□□□ -2.13
VPS50-219ENST00000495039 BTN2A3PQ96KV6 586 aa1.74□□□□□ -2.13
VPS50-219ENST00000495039 CDX2Q99626 313 aaPredicted RBP1.74□□□□□ -2.13
VPS50-219ENST00000495039 TMEM243Q9BU79 118 aa1.74□□□□□ -2.13
VPS50-219ENST00000495039 SAMD10Q9BYL1 202 aa1.74□□□□□ -2.13
VPS50-219ENST00000495039 UCK2Q9BZX2 261 aa1.74□□□□□ -2.13
VPS50-219ENST00000495039 GEMIN7Q9H840 131 aaKnown RBP1.74□□□□□ -2.13
VPS50-219ENST00000495039 RAB20Q9NX57 234 aa1.74□□□□□ -2.13
VPS50-219ENST00000495039 PDP1Q9P0J1 537 aaPredicted RBP1.74□□□□□ -2.13
VPS50-219ENST00000495039 SCN4AP35499 1836 aa1.74□□□□□ -2.13
VPS50-219ENST00000495039 TSPOAP1O95153 1857 aa1.73□□□□□ -2.13
VPS50-219ENST00000495039 COL5A1P20908 1838 aaPredicted RBP1.73□□□□□ -2.13
VPS50-219ENST00000495039 UBN2Q6ZU65 1347 aa1.73□□□□□ -2.13
VPS50-219ENST00000495039 PCDH11XQ9BZA7 1347 aa1.73□□□□□ -2.13
VPS50-219ENST00000495039 IGHV3-49A0A0A0MS15 119 aa1.73□□□□□ -2.13
VPS50-219ENST00000495039 IGHV3-72A0A0B4J1Y9 119 aa1.73□□□□□ -2.13
VPS50-219ENST00000495039 IGHV3OR16-9A0A0B4J2B5 98 aa1.73□□□□□ -2.13
VPS50-219ENST00000495039 KBTBD11-OT1A0A1B0GTJ5 212 aa1.73□□□□□ -2.13
VPS50-219ENST00000495039 BTNL10A8MVZ5 291 aa1.73□□□□□ -2.13
VPS50-219ENST00000495039 TAAR5O14804 337 aa1.73□□□□□ -2.13
VPS50-219ENST00000495039 NMT2O60551 498 aa1.73□□□□□ -2.13
VPS50-219ENST00000495039 IGKV4-1P06312 121 aa1.73□□□□□ -2.13
VPS50-219ENST00000495039 STOMP27105 288 aa1.73□□□□□ -2.13
VPS50-219ENST00000495039 PSMB5P28074 263 aa1.73□□□□□ -2.13
VPS50-219ENST00000495039 HTR1DP28221 377 aa1.73□□□□□ -2.13
VPS50-219ENST00000495039 PRLHRP49683 370 aa1.73□□□□□ -2.13
VPS50-219ENST00000495039 BEX3Q00994 111 aa1.73□□□□□ -2.13
VPS50-219ENST00000495039 MDP1Q86V88 176 aa1.73□□□□□ -2.13
VPS50-219ENST00000495039 JAGN1Q8N5M9 183 aa1.73□□□□□ -2.13
VPS50-219ENST00000495039 UBAC2Q8NBM4 344 aa1.73□□□□□ -2.13
VPS50-219ENST00000495039 TSEN15Q8WW01 171 aaKnown RBP1.73□□□□□ -2.13
VPS50-219ENST00000495039 NRGNQ92686 78 aa1.73□□□□□ -2.13
VPS50-219ENST00000495039 TEKT3Q9BXF9 490 aa1.73□□□□□ -2.13
VPS50-219ENST00000495039 FRMD8P1Q9BZ68 369 aaPredicted RBP1.73□□□□□ -2.13
VPS50-219ENST00000495039 CCNB1IP1Q9NPC3 277 aa1.73□□□□□ -2.13
VPS50-219ENST00000495039 ACP6Q9NPH0 428 aa1.73□□□□□ -2.13
VPS50-219ENST00000495039 C20orf96Q9NUD7 363 aaPredicted RBP1.73□□□□□ -2.13
VPS50-219ENST00000495039 CLN8Q9UBY8 286 aa1.73□□□□□ -2.13
VPS50-219ENST00000495039 TICRRQ7Z2Z1 1910 aa1.72□□□□□ -2.13
VPS50-219ENST00000495039 ADGRL1O94910 1474 aa1.72□□□□□ -2.13
VPS50-219ENST00000495039 TSPAN11A1L157 253 aa1.72□□□□□ -2.13
VPS50-219ENST00000495039 ZNF98A6NK75 572 aa1.72□□□□□ -2.13
VPS50-219ENST00000495039 TRIM64CA6NLI5 447 aa1.72□□□□□ -2.13
VPS50-219ENST00000495039 M0R3G1 203 aa1.72□□□□□ -2.13
VPS50-219ENST00000495039 NME4O00746 187 aa1.72□□□□□ -2.13
VPS50-219ENST00000495039 PLIN3O60664 434 aa1.72□□□□□ -2.13
VPS50-219ENST00000495039 IGKV1D-16P01601 117 aa1.72□□□□□ -2.13
VPS50-219ENST00000495039 GLAP06280 429 aa1.72□□□□□ -2.13
VPS50-219ENST00000495039 CTRB1P17538 263 aa1.72□□□□□ -2.13
VPS50-219ENST00000495039 RAB4AP20338 218 aa1.72□□□□□ -2.13
VPS50-219ENST00000495039 POLR2IP36954 125 aaKnown RBP1.72□□□□□ -2.13
VPS50-219ENST00000495039 RFC3P40938 356 aa1.72□□□□□ -2.13
VPS50-219ENST00000495039 TNFSF9P41273 254 aa1.72□□□□□ -2.13
VPS50-219ENST00000495039 SIGLEC14Q08ET2 396 aa1.72□□□□□ -2.13
VPS50-219ENST00000495039 GCSAMLQ5JQS6 135 aa1.72□□□□□ -2.13
VPS50-219ENST00000495039 GUSBP11Q6P575 273 aa1.72□□□□□ -2.13
VPS50-219ENST00000495039 TMEM220Q6QAJ8 160 aa1.72□□□□□ -2.13
VPS50-219ENST00000495039 HORMAD1Q86X24 394 aa1.72□□□□□ -2.13
VPS50-219ENST00000495039 ZNF645Q8N7E2 425 aa1.72□□□□□ -2.13
VPS50-219ENST00000495039 SPANXA2-OT1Q8N9U9 137 aa1.72□□□□□ -2.13
VPS50-219ENST00000495039 OR5T1Q8NG75 326 aa1.72□□□□□ -2.13
VPS50-219ENST00000495039 OR4M1Q8NGD0 313 aa1.72□□□□□ -2.13
VPS50-219ENST00000495039 MYCBPQ99417 103 aaPredicted RBP1.72□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms