RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 F2RL1P55085 397 aa12.17□□□□□ -0.46
USP42-206ENST00000479544 PDCD1Q15116 288 aa12.17□□□□□ -0.46
USP42-206ENST00000479544 TAF9Q16594 264 aa12.17□□□□□ -0.46
USP42-206ENST00000479544 TMEM52BQ4KMG9 183 aa12.17□□□□□ -0.46
USP42-206ENST00000479544 MISPQ8IVT2 679 aa12.17□□□□□ -0.46
USP42-206ENST00000479544 TERB2Q8NHR7 220 aa12.17□□□□□ -0.46
USP42-206ENST00000479544 TRAV36DV7A0A075B6V5 113 aa12.17□□□□□ -0.46
USP42-206ENST00000479544 DPP4P27487 766 aa12.17□□□□□ -0.46
USP42-206ENST00000479544 EEF1A1P68104 462 aaKnown RBP12.17□□□□□ -0.46
USP42-206ENST00000479544 SERTAD2Q14140 314 aa12.17□□□□□ -0.46
USP42-206ENST00000479544 LCN15Q6UWW0 184 aa12.17□□□□□ -0.46
USP42-206ENST00000479544 GPR137CQ8N3F9 429 aa12.17□□□□□ -0.46
USP42-206ENST00000479544 NPEPL1Q8NDH3 523 aa12.17□□□□□ -0.46
USP42-206ENST00000479544 C19orf43Q9BQ61 176 aa12.17□□□□□ -0.46
USP42-206ENST00000479544 NUDT9Q9BW91 350 aa12.17□□□□□ -0.46
USP42-206ENST00000479544 SHARPINQ9H0F6 387 aa12.17□□□□□ -0.46
USP42-206ENST00000479544 PTGES2Q9H7Z7 377 aa12.17□□□□□ -0.46
USP42-206ENST00000479544 GAR1Q9NY12 217 aaKnown RBP12.17□□□□□ -0.46
USP42-206ENST00000479544 KLHDC2Q9Y2U9 406 aa12.17□□□□□ -0.46
USP42-206ENST00000479544 A0A087WUJ7 227 aa12.17□□□□□ -0.46
USP42-206ENST00000479544 FABP4P15090 132 aa12.17□□□□□ -0.46
USP42-206ENST00000479544 ID4P47928 161 aa12.17□□□□□ -0.46
USP42-206ENST00000479544 SLC6A8P48029 635 aa12.17□□□□□ -0.46
USP42-206ENST00000479544 GUK1Q16774 197 aa12.17□□□□□ -0.46
USP42-206ENST00000479544 C1orf140Q5VVS0 124 aa12.17□□□□□ -0.46
USP42-206ENST00000479544 OR2A2Q6IF42 318 aa12.17□□□□□ -0.46
USP42-206ENST00000479544 RBMS3Q6XE24 437 aaKnown RBP12.17□□□□□ -0.46
USP42-206ENST00000479544 DPPA2Q7Z7J5 298 aa12.17□□□□□ -0.46
USP42-206ENST00000479544 AKR7LQ8NHP1 331 aa12.17□□□□□ -0.46
USP42-206ENST00000479544 ADAMTS18Q8TE60 1221 aa12.17□□□□□ -0.46
USP42-206ENST00000479544 RRNAD1Q96FB5 475 aaKnown RBP12.17□□□□□ -0.46
USP42-206ENST00000479544 LINC00615Q96LM1 132 aaPredicted RBP12.17□□□□□ -0.46
USP42-206ENST00000479544 HEATR5BQ9P2D3 2071 aa12.17□□□□□ -0.46
USP42-206ENST00000479544 A0A1W2PPE2 198 aa12.17□□□□□ -0.46
USP42-206ENST00000479544 THBS2P35442 1172 aa12.17□□□□□ -0.46
USP42-206ENST00000479544 RAB4BP61018 213 aa12.17□□□□□ -0.46
USP42-206ENST00000479544 ADIRFQ15847 76 aa12.17□□□□□ -0.46
USP42-206ENST00000479544 ZNF709Q8N972 641 aa12.17□□□□□ -0.46
USP42-206ENST00000479544 TSLPQ969D9 159 aa12.17□□□□□ -0.46
USP42-206ENST00000479544 PRSS27Q9BQR3 290 aa12.17□□□□□ -0.46
USP42-206ENST00000479544 HEXA-AS1Q9H8Q6 139 aa12.17□□□□□ -0.46
USP42-206ENST00000479544 CTSFQ9UBX1 484 aa12.17□□□□□ -0.46
USP42-206ENST00000479544 JTBO76095 146 aa12.16□□□□□ -0.46
USP42-206ENST00000479544 CST7O76096 145 aa12.16□□□□□ -0.46
USP42-206ENST00000479544 EPPINO95925 133 aa12.16□□□□□ -0.46
USP42-206ENST00000479544 SERPINE2P07093 398 aa12.16□□□□□ -0.46
USP42-206ENST00000479544 RCC1P18754 421 aaPredicted RBP12.16□□□□□ -0.46
USP42-206ENST00000479544 TSFMP43897 325 aaKnown RBP12.16□□□□□ -0.46
USP42-206ENST00000479544 DAP3P51398 398 aaKnown RBP12.16□□□□□ -0.46
USP42-206ENST00000479544 TAS2R46P59540 309 aa12.16□□□□□ -0.46
USP42-206ENST00000479544 TMEM176BQ3YBM2 270 aaPredicted RBP12.16□□□□□ -0.46
USP42-206ENST00000479544 C9orf50Q5SZB4 431 aa12.16□□□□□ -0.46
USP42-206ENST00000479544 PRAMEF20Q5VT98 475 aa12.16□□□□□ -0.46
USP42-206ENST00000479544 C9orf135Q5VTT2 229 aa12.16□□□□□ -0.46
USP42-206ENST00000479544 TMPPEQ6ZT21 453 aa12.16□□□□□ -0.46
USP42-206ENST00000479544 ADAD2Q8NCV1 583 aaKnown RBP12.16□□□□□ -0.46
USP42-206ENST00000479544 OR6S1Q8NH40 331 aa12.16□□□□□ -0.46
USP42-206ENST00000479544 SPPL3Q8TCT6 385 aa12.16□□□□□ -0.46
USP42-206ENST00000479544 SLC25A28Q96A46 364 aa12.16□□□□□ -0.46
USP42-206ENST00000479544 SEH1LQ96EE3 360 aa12.16□□□□□ -0.46
USP42-206ENST00000479544 LRP12Q9Y561 859 aa12.16□□□□□ -0.46
USP42-206ENST00000479544 POLEQ07864 2286 aa12.16□□□□□ -0.46
USP42-206ENST00000479544 GALR3O60755 368 aaPredicted RBP12.16□□□□□ -0.46
USP42-206ENST00000479544 OLFM2O95897 454 aa12.16□□□□□ -0.46
USP42-206ENST00000479544 PPP2CBP62714 309 aa12.16□□□□□ -0.46
USP42-206ENST00000479544 PPP2CAP67775 309 aa12.16□□□□□ -0.46
USP42-206ENST00000479544 RIN1Q13671 783 aa12.16□□□□□ -0.46
USP42-206ENST00000479544 C21orf62-AS1Q17RA5 79 aa12.16□□□□□ -0.46
USP42-206ENST00000479544 AWAT1Q58HT5 328 aa12.16□□□□□ -0.46
USP42-206ENST00000479544 C1orf53Q5VUE5 145 aa12.16□□□□□ -0.46
USP42-206ENST00000479544 BRICD5Q6PL45 260 aa12.16□□□□□ -0.46
USP42-206ENST00000479544 TMEM229BQ8NBD8 167 aa12.16□□□□□ -0.46
USP42-206ENST00000479544 OR5AP2Q8NGF4 316 aa12.16□□□□□ -0.46
USP42-206ENST00000479544 PBX4Q9BYU1 374 aa12.16□□□□□ -0.46
USP42-206ENST00000479544 DEFB126Q9BYW3 111 aa12.16□□□□□ -0.46
USP42-206ENST00000479544 GPR84Q9NQS5 396 aa12.16□□□□□ -0.46
USP42-206ENST00000479544 DNAJB12Q9NXW2 375 aaKnown RBP12.16□□□□□ -0.46
USP42-206ENST00000479544 GNG13Q9P2W3 67 aa12.16□□□□□ -0.46
USP42-206ENST00000479544 DOCK6Q96HP0 2047 aa12.16□□□□□ -0.46
USP42-206ENST00000479544 PRSS37A4D1T9 235 aa12.16□□□□□ -0.46
USP42-206ENST00000479544 LILRB3O75022 631 aa12.16□□□□□ -0.46
USP42-206ENST00000479544 YIF1AO95070 293 aa12.16□□□□□ -0.46
USP42-206ENST00000479544 SEMA4FO95754 770 aa12.16□□□□□ -0.46
USP42-206ENST00000479544 ZNF728P0DKX0 622 aa12.16□□□□□ -0.46
USP42-206ENST00000479544 PPP1CAP62136 330 aa12.16□□□□□ -0.46
USP42-206ENST00000479544 OR2T2Q6IF00 324 aa12.16□□□□□ -0.46
USP42-206ENST00000479544 OTOSQ8NHW6 89 aa12.16□□□□□ -0.46
USP42-206ENST00000479544 ANK1P16157 1881 aa12.15□□□□□ -0.46
USP42-206ENST00000479544 SHISA8B8ZZ34 492 aa12.15□□□□□ -0.46
USP42-206ENST00000479544 TBX19O60806 448 aa12.15□□□□□ -0.46
USP42-206ENST00000479544 H2AFB1P0C5Y9 115 aa12.15□□□□□ -0.46
USP42-206ENST00000479544 FOLR1P15328 257 aa12.15□□□□□ -0.46
USP42-206ENST00000479544 TMEM128Q5BJH2 165 aa12.15□□□□□ -0.46
USP42-206ENST00000479544 ZNF705AQ6ZN79 300 aaPredicted RBP12.15□□□□□ -0.46
USP42-206ENST00000479544 OR52N4Q8NGI2 321 aa12.15□□□□□ -0.46
USP42-206ENST00000479544 PIGCQ92535 297 aa12.15□□□□□ -0.46
USP42-206ENST00000479544 MARVELD3Q96A59 401 aa12.15□□□□□ -0.46
USP42-206ENST00000479544 OR8B4Q96RC9 309 aa12.15□□□□□ -0.46
USP42-206ENST00000479544 NKX2-4Q9H2Z4 354 aa12.15□□□□□ -0.46
USP42-206ENST00000479544 A0A1W2PPV9 198 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms