RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 SSTR1P30872 391 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 CCKARP32238 428 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 CTSCP53634 463 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 PAX9P55771 341 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 OR2B8PP59922 312 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 ERVFC1-1P60608 527 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 GNG3P63215 75 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 TLE3Q04726 772 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 HYAL1Q12794 435 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 FGFBP1Q14512 234 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 ZNF235Q14590 738 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 PSG5Q15238 335 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 CBWD6Q4V339 395 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 UNC50Q53HI1 259 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 C6orf226Q5I0X4 101 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 SAMD4BQ5PRF9 694 aaKnown RBP4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 AKR1C8PQ5T2L2 129 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 FAM69BQ5VUD6 431 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 TMEM198Q66K66 360 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 FAM71E1Q6IPT2 247 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 PRR27Q6MZM9 219 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 ZDHHC23Q8IYP9 409 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 OR4D9Q8NGE8 314 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 LYPD6BQ8NI32 183 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 ARRDC2Q8TBH0 407 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 OVCA2Q8WZ82 227 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 NAT6Q93015 286 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 COQ8BQ96D53 544 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 OR10C1Q96KK4 312 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 MUS81Q96NY9 551 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 CSF3RQ99062 836 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 MEGF9Q9H1U4 602 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 CLMPQ9H6B4 373 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 SCN3BQ9NY72 215 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 SAMD4AQ9UPU9 718 aaKnown RBP4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 FOXA2Q9Y261 457 aaPredicted RBP4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 LINC01553A4QN01 128 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 EFCAB9A8MZ26 197 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 C21orf140B9A014 251 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 D6RAR5 112 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 UBFD1O14562 309 aaKnown RBP4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 WDR1O75083 606 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 LRATO95237 230 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 MBPP02686 304 aaPredicted RBP4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 GAPDHP04406 335 aaKnown RBP4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 CHRM4P08173 479 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 CST2P09228 141 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 WNT2P09544 360 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 CD79AP11912 226 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 SELEP16581 610 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 C4BPBP20851 252 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 FUT3P21217 361 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 PSMB4P28070 264 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 PTGER1P34995 402 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 PSG6Q00889 435 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 BAXQ07812 192 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 PJVKQ0ZLH3 352 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 TEAD2Q15562 447 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 ELAVL1Q15717 326 aaKnown RBP4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 PDZD11Q5EBL8 140 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 TPTE2P1Q5T6R2 138 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 TXNDC8Q6A555 127 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 HIST2H2BCQ6DN03 193 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 HIST2H2BDQ6DRA6 164 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 OR4A47Q6IF82 309 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 TCTN3Q6NUS6 607 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 WDR59Q6PJI9 974 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 B3GLCTQ6Y288 498 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 CBLN2Q8IUK8 224 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 KLHDC8AQ8IYD2 350 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 H1FOOQ8IZA3 346 aaPredicted RBP4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 LINC00301Q8NCQ3 95 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 ZNF738Q8NE65 137 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 LFNGQ8NES3 379 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 MDGA1Q8NFP4 955 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 OR4E2Q8NGC2 313 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 OR13C8Q8NGS7 320 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 OR4A16Q8NH70 328 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 TAAR8Q969N4 342 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 SEH1LQ96EE3 360 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 ZC3HAV1LQ96H79 300 aaKnown RBP4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 ADGRG7Q96K78 797 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 LXNQ9BS40 222 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 FAAP24Q9BTP7 215 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 TKTL2Q9H0I9 626 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 MFSD1Q9H3U5 465 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 CDCP1Q9H5V8 836 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 METTL17Q9H7H0 456 aaPredicted RBP4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 TMEM38BQ9NVV0 291 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 NLKQ9UBE8 527 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 TFR2Q9UP52 801 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 B3GALT5Q9Y2C3 310 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 OR10H1Q9Y4A9 318 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 RNF115Q9Y4L5 304 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 V9GYS6 101 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 FAM186AA6NE01 2351 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 WDR81Q562E7 1941 aa4.24□□□□□ -1.73
CCDC88A-209ENST00000456975 PRAMEF33A0A0G2JMD5 474 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 LRIT2A6NDA9 550 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 TMEM200CA6NKL6 621 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms