RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 RPL3LQ92901 407 aaKnown RBP6.52□□□□□ -1.37
UPF2-203ENST00000397053 OR4F4Q96R69 305 aa6.52□□□□□ -1.37
UPF2-203ENST00000397053 RYDENQ9NUL5 291 aaKnown RBP6.52□□□□□ -1.37
UPF2-203ENST00000397053 TBX21Q9UL17 535 aa6.52□□□□□ -1.37
UPF2-203ENST00000397053 NFAT5O94916 1531 aa6.52□□□□□ -1.37
UPF2-203ENST00000397053 SPTY2D1-AS1A0A0U1RR47 76 aa6.52□□□□□ -1.37
UPF2-203ENST00000397053 LILRA5A6NI73 299 aa6.52□□□□□ -1.37
UPF2-203ENST00000397053 SDCBPO00560 298 aaPredicted RBP6.52□□□□□ -1.37
UPF2-203ENST00000397053 LINC01565O15544 149 aa6.52□□□□□ -1.37
UPF2-203ENST00000397053 ADAM20O43506 726 aa6.52□□□□□ -1.37
UPF2-203ENST00000397053 HRASP01112 189 aa6.52□□□□□ -1.37
UPF2-203ENST00000397053 SCGB1C2P0DMR2 95 aa6.52□□□□□ -1.37
UPF2-203ENST00000397053 FCGR2CP31995 323 aa6.52□□□□□ -1.37
UPF2-203ENST00000397053 NKAIN4Q8IVV8 208 aa6.52□□□□□ -1.37
UPF2-203ENST00000397053 GALNT16Q8N428 558 aa6.52□□□□□ -1.37
UPF2-203ENST00000397053 OR4A4PQ8NGN8 299 aa6.52□□□□□ -1.37
UPF2-203ENST00000397053 PFN4Q8NHR9 129 aa6.52□□□□□ -1.37
UPF2-203ENST00000397053 SORT1Q99523 831 aa6.52□□□□□ -1.37
UPF2-203ENST00000397053 TEAD3Q99594 435 aa6.52□□□□□ -1.37
UPF2-203ENST00000397053 SEBOXQ9HB31 216 aaPredicted RBP6.52□□□□□ -1.37
UPF2-203ENST00000397053 IL36GQ9NZH8 169 aa6.52□□□□□ -1.37
UPF2-203ENST00000397053 NAGKQ9UJ70 344 aa6.52□□□□□ -1.37
UPF2-203ENST00000397053 DIMT1Q9UNQ2 313 aaKnown RBP6.52□□□□□ -1.37
UPF2-203ENST00000397053 SOD1P00441 154 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 OR5H8P0DN80 308 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 OR13C7P0DN81 318 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 SLC25A4P12235 298 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 GABRA1P14867 456 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 PFN3P60673 137 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 TNFAIP6P98066 277 aaPredicted RBP6.51□□□□□ -1.37
UPF2-203ENST00000397053 PMP22Q01453 160 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 RPL18Q07020 188 aaKnown RBP6.51□□□□□ -1.37
UPF2-203ENST00000397053 IL11RAQ14626 422 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 RNPS1Q15287 305 aaKnown RBP6.51□□□□□ -1.37
UPF2-203ENST00000397053 EMC4Q5J8M3 183 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 ACER2Q5QJU3 275 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 RHOUQ7L0Q8 258 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 FBXL6Q8N531 539 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 TMEM99Q8N816 258 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 OR52N1Q8NH53 320 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 SLC7A6Q92536 515 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 C1RLQ9NZP8 487 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 PPIL1Q9Y3C6 166 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 TMEM30CPA0ZSE6 113 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 ZNF727A8MUV8 499 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 DCTN6O00399 190 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 MBP02144 154 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 RAF1P04049 648 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 TMIGD3P0DMS9 266 aaPredicted RBP6.51□□□□□ -1.37
UPF2-203ENST00000397053 SLC25A6P12236 298 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 MPGP29372 298 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 POLR2IP36954 125 aaKnown RBP6.51□□□□□ -1.37
UPF2-203ENST00000397053 LGALS7P47929 136 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 GNG10P50151 68 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 PCBP4P57723 403 aaKnown RBP6.51□□□□□ -1.37
UPF2-203ENST00000397053 GAMTQ14353 236 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 CTU2Q2VPK5 515 aaKnown RBP6.51□□□□□ -1.37
UPF2-203ENST00000397053 PTOV1Q86YD1 416 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 TMEM123Q8N131 208 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 ZFAND2BQ8WV99 257 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 ADAT1Q9BUB4 502 aaKnown RBP6.51□□□□□ -1.37
UPF2-203ENST00000397053 PARP12Q9H0J9 701 aaKnown RBP6.51□□□□□ -1.37
UPF2-203ENST00000397053 EXOSC3Q9NQT5 275 aaKnown RBP6.51□□□□□ -1.37
UPF2-203ENST00000397053 OCIAD1Q9NX40 245 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 GMPR2Q9P2T1 348 aaKnown RBP6.51□□□□□ -1.37
UPF2-203ENST00000397053 FBXL4Q9UKA2 621 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 SNRNP200O75643 2136 aaKnown RBP6.51□□□□□ -1.37
UPF2-203ENST00000397053 A0A1W2PR80 420 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 TXNDC12O95881 172 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 CYC1P08574 325 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 ALDOCP09972 364 aaKnown RBP6.51□□□□□ -1.37
UPF2-203ENST00000397053 GNG3P63215 75 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 FOXF1Q12946 379 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 HTR4Q13639 388 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 FZD2Q14332 565 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 OXA1LQ15070 435 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 ELFN2Q5R3F8 820 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 GUSBP11Q6P575 273 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 SPNS3Q6ZMD2 512 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 OR52L2PQ8NGH6 319 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 RFESDQ8TAC1 157 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 DYNC2LI1Q8TCX1 351 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 RPUSD4Q96CM3 377 aaKnown RBP6.51□□□□□ -1.37
UPF2-203ENST00000397053 ATP5SQ99766 215 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 TMPRSS5Q9H3S3 457 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 TMEM38AQ9H6F2 299 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 FBXO34Q9NWN3 711 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 WSB2Q9NYS7 404 aaPredicted RBP6.51□□□□□ -1.37
UPF2-203ENST00000397053 AK3Q9UIJ7 227 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 ICAM5Q9UMF0 924 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 AMMECR1Q9Y4X0 333 aaPredicted RBP6.51□□□□□ -1.37
UPF2-203ENST00000397053 KIDINS220Q9ULH0 1771 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 TMEM235A6NFC5 223 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 TMEM200CA6NKL6 621 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 GABRG2P18507 467 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 MMP11P24347 488 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 OR3A4PP47883 348 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 CCR9P51686 369 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 KLF3P57682 345 aaPredicted RBP6.51□□□□□ -1.37
UPF2-203ENST00000397053 KCNMB1Q16558 191 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms