RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 PHYHO14832 338 aa18.45■□□□□ 0.54
CLN3-207ENST00000395653 RP2O75695 350 aa18.45■□□□□ 0.54
CLN3-207ENST00000395653 USF1P22415 310 aaPredicted RBP18.45■□□□□ 0.54
CLN3-207ENST00000395653 TNFSF4P23510 183 aa18.45■□□□□ 0.54
CLN3-207ENST00000395653 ZNF121P58317 390 aaPredicted RBP18.45■□□□□ 0.54
CLN3-207ENST00000395653 PSMA6P60900 246 aaKnown RBP18.45■□□□□ 0.54
CLN3-207ENST00000395653 ROM1Q03395 351 aa18.45■□□□□ 0.54
CLN3-207ENST00000395653 ZNF92Q03936 586 aa18.45■□□□□ 0.54
CLN3-207ENST00000395653 SLC35F2Q8IXU6 374 aa18.45■□□□□ 0.54
CLN3-207ENST00000395653 OR52H1Q8NGJ2 320 aa18.45■□□□□ 0.54
CLN3-207ENST00000395653 OR51G2Q8NGK0 314 aa18.45■□□□□ 0.54
CLN3-207ENST00000395653 YIPF5Q969M3 257 aa18.45■□□□□ 0.54
CLN3-207ENST00000395653 ELMOD3Q96FG2 381 aa18.45■□□□□ 0.54
CLN3-207ENST00000395653 REPIN1Q9BWE0 567 aaKnown RBP18.45■□□□□ 0.54
CLN3-207ENST00000395653 MROQ9BYG7 248 aa18.45■□□□□ 0.54
CLN3-207ENST00000395653 GSX1Q9H4S2 264 aaPredicted RBP18.45■□□□□ 0.54
CLN3-207ENST00000395653 CLN6Q9NWW5 311 aa18.45■□□□□ 0.54
CLN3-207ENST00000395653 SMPD3Q9NY59 655 aaPredicted RBP18.45■□□□□ 0.54
CLN3-207ENST00000395653 COPS3Q9UNS2 423 aa18.45■□□□□ 0.54
CLN3-207ENST00000395653 LRP12Q9Y561 859 aa18.45■□□□□ 0.54
CLN3-207ENST00000395653 IGHV1-69-2A0A0G2JMI3 117 aa18.44■□□□□ 0.54
CLN3-207ENST00000395653 TMEM33P57088 247 aa18.44■□□□□ 0.54
CLN3-207ENST00000395653 TNFAIP6P98066 277 aaPredicted RBP18.44■□□□□ 0.54
CLN3-207ENST00000395653 MEDAGQ5VYS4 303 aa18.44■□□□□ 0.54
CLN3-207ENST00000395653 PACRGLQ8N7B6 248 aa18.44■□□□□ 0.54
CLN3-207ENST00000395653 BHLHE23Q8NDY6 225 aa18.44■□□□□ 0.54
CLN3-207ENST00000395653 OR2Z1Q8NG97 314 aa18.44■□□□□ 0.54
CLN3-207ENST00000395653 OR13G1Q8NGZ3 307 aa18.44■□□□□ 0.54
CLN3-207ENST00000395653 UBE2FQ969M7 185 aa18.44■□□□□ 0.54
CLN3-207ENST00000395653 SPSB4Q96A44 273 aa18.44■□□□□ 0.54
CLN3-207ENST00000395653 OR8B4Q96RC9 309 aa18.44■□□□□ 0.54
CLN3-207ENST00000395653 SLC30A2Q9BRI3 323 aa18.44■□□□□ 0.54
CLN3-207ENST00000395653 FAM118AQ9NWS6 357 aa18.44■□□□□ 0.54
CLN3-207ENST00000395653 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP18.44■□□□□ 0.54
CLN3-207ENST00000395653 N6AMT1Q9Y5N5 214 aa18.44■□□□□ 0.54
CLN3-207ENST00000395653 CR1P17927 2039 aa18.43■□□□□ 0.54
CLN3-207ENST00000395653 LOC100130705A0A1B0GUX0 176 aa18.43■□□□□ 0.54
CLN3-207ENST00000395653 A0A1B0GWJ7 208 aa18.43■□□□□ 0.54
CLN3-207ENST00000395653 SLC16A6O15403 523 aa18.43■□□□□ 0.54
CLN3-207ENST00000395653 TBX1O43435 398 aa18.43■□□□□ 0.54
CLN3-207ENST00000395653 CDC14BO60729 498 aa18.43■□□□□ 0.54
CLN3-207ENST00000395653 ZNF254O75437 659 aa18.43■□□□□ 0.54
CLN3-207ENST00000395653 DCTDP32321 178 aa18.43■□□□□ 0.54
CLN3-207ENST00000395653 PRSS12P56730 875 aa18.43■□□□□ 0.54
CLN3-207ENST00000395653 OCLNQ16625 522 aa18.43■□□□□ 0.54
CLN3-207ENST00000395653 CLEC9AQ6UXN8 241 aa18.43■□□□□ 0.54
CLN3-207ENST00000395653 FAM57BQ71RH2 274 aa18.43■□□□□ 0.54
CLN3-207ENST00000395653 ZNF679Q8IYX0 411 aa18.43■□□□□ 0.54
CLN3-207ENST00000395653 ZNF275Q9NSD4 429 aaPredicted RBP18.43■□□□□ 0.54
CLN3-207ENST00000395653 IL19Q9UHD0 177 aa18.43■□□□□ 0.54
CLN3-207ENST00000395653 CD300LBA8K4G0 201 aa18.42■□□□□ 0.54
CLN3-207ENST00000395653 ZNF670-ZNF695F2Z2N8 137 aa18.42■□□□□ 0.54
CLN3-207ENST00000395653 DLGAP1O14490 977 aa18.42■□□□□ 0.54
CLN3-207ENST00000395653 MPZL2O60487 215 aa18.42■□□□□ 0.54
CLN3-207ENST00000395653 LILRA1O75019 489 aa18.42■□□□□ 0.54
CLN3-207ENST00000395653 LY6G6DO95868 133 aa18.42■□□□□ 0.54
CLN3-207ENST00000395653 PEX2P28328 305 aa18.42■□□□□ 0.54
CLN3-207ENST00000395653 CXCR4P61073 352 aa18.42■□□□□ 0.54
CLN3-207ENST00000395653 ELF3P78545 371 aaPredicted RBP18.42■□□□□ 0.54
CLN3-207ENST00000395653 TIGD6Q17RP2 521 aa18.42■□□□□ 0.54
CLN3-207ENST00000395653 LRRC36Q1X8D7 754 aa18.42■□□□□ 0.54
CLN3-207ENST00000395653 LPCAT4Q643R3 524 aa18.42■□□□□ 0.54
CLN3-207ENST00000395653 ZNF322Q6U7Q0 402 aaPredicted RBP18.42■□□□□ 0.54
CLN3-207ENST00000395653 RFLNBQ8N5W9 214 aa18.42■□□□□ 0.54
CLN3-207ENST00000395653 SPRYD4Q8WW59 207 aaPredicted RBP18.42■□□□□ 0.54
CLN3-207ENST00000395653 PGAM5Q96HS1 289 aa18.42■□□□□ 0.54
CLN3-207ENST00000395653 OR10A2Q9H208 303 aa18.42■□□□□ 0.54
CLN3-207ENST00000395653 RGCCQ9H4X1 137 aa18.42■□□□□ 0.54
CLN3-207ENST00000395653 DCLRE1BQ9H816 532 aa18.42■□□□□ 0.54
CLN3-207ENST00000395653 TMEM100Q9NV29 134 aa18.42■□□□□ 0.54
CLN3-207ENST00000395653 IGHV4-61A0A0C4DH41 118 aa18.41■□□□□ 0.54
CLN3-207ENST00000395653 PRR32B1ATL7 298 aa18.41■□□□□ 0.54
CLN3-207ENST00000395653 CASQ2O14958 399 aaPredicted RBP18.41■□□□□ 0.54
CLN3-207ENST00000395653 ENTPD6O75354 484 aa18.41■□□□□ 0.54
CLN3-207ENST00000395653 HEXAP06865 529 aa18.41■□□□□ 0.54
CLN3-207ENST00000395653 TACSTD2P09758 323 aa18.41■□□□□ 0.54
CLN3-207ENST00000395653 GABRB1P18505 474 aa18.41■□□□□ 0.54
CLN3-207ENST00000395653 TNFRSF1AP19438 455 aa18.41■□□□□ 0.54
CLN3-207ENST00000395653 CFL1P23528 166 aaKnown RBP18.41■□□□□ 0.54
CLN3-207ENST00000395653 GPR6P46095 362 aaPredicted RBP18.41■□□□□ 0.54
CLN3-207ENST00000395653 HFEQ30201 348 aa18.41■□□□□ 0.54
CLN3-207ENST00000395653 ENTHD1Q8IYW4 607 aa18.41■□□□□ 0.54
CLN3-207ENST00000395653 GALNT4Q8N4A0 578 aa18.41■□□□□ 0.54
CLN3-207ENST00000395653 SGK3Q96BR1 496 aa18.41■□□□□ 0.54
CLN3-207ENST00000395653 REEP6Q96HR9 211 aa18.41■□□□□ 0.54
CLN3-207ENST00000395653 BRD7Q9NPI1 651 aa18.41■□□□□ 0.54
CLN3-207ENST00000395653 IKZF2Q9UKS7 526 aa18.41■□□□□ 0.54
CLN3-207ENST00000395653 GGT3PA6NGU5 568 aa18.4■□□□□ 0.54
CLN3-207ENST00000395653 SNTNA6NMZ2 147 aa18.4■□□□□ 0.54
CLN3-207ENST00000395653 PSMD9O00233 223 aa18.4■□□□□ 0.54
CLN3-207ENST00000395653 MLNRO43193 412 aa18.4■□□□□ 0.54
CLN3-207ENST00000395653 OR2T7P0C7T2 308 aa18.4■□□□□ 0.54
CLN3-207ENST00000395653 ATP6V1E1P36543 226 aa18.4■□□□□ 0.54
CLN3-207ENST00000395653 MTNR1AP48039 350 aa18.4■□□□□ 0.54
CLN3-207ENST00000395653 RIDAP52758 137 aaKnown RBP18.4■□□□□ 0.54
CLN3-207ENST00000395653 EGR3Q06889 387 aa18.4■□□□□ 0.54
CLN3-207ENST00000395653 TMEM249Q2WGJ8 235 aa18.4■□□□□ 0.54
CLN3-207ENST00000395653 SPRNQ5BIV9 151 aa18.4■□□□□ 0.54
CLN3-207ENST00000395653 ZNF555Q8NEP9 628 aa18.4■□□□□ 0.54
CLN3-207ENST00000395653 OR10AD1Q8NGE0 317 aa18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms