RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 UBE2ZQ9H832 354 aaPredicted RBP11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 ACER3Q9NUN7 267 aa11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 FRG2CA6NGY1 282 aa11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 HAAOP46952 286 aa11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 DIO1P49895 249 aa11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 RPL18Q07020 188 aaKnown RBP11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 OR2A2Q6IF42 318 aa11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 ABI3BPQ7Z7G0 1075 aa11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 C6orf106Q9H6K1 298 aaPredicted RBP11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 HPP00738 406 aa11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 PIGPP57054 158 aa11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 NCR3LG1Q68D85 454 aa11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 LINC00299Q6ZSB3 139 aa11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 KMT5CQ86Y97 462 aa11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 CA13Q8N1Q1 262 aa11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 ARHGEF39Q8N4T4 335 aa11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 TRGV8A0A0C4DH27 118 aa11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 ZC3H12DA2A288 527 aaKnown RBP11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 SHISA7A6NL88 538 aa11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 ACOT8O14734 319 aa11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 HRH1P35367 487 aa11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 HTRA4P83105 476 aaPredicted RBP11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 DUSP2Q05923 314 aa11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 OSR2Q8N2R0 312 aa11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 SMIM7Q9BQ49 75 aa11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 WDR61Q9GZS3 305 aaKnown RBP11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 A0A1W2PR48 441 aa11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 RFPL4AA6NLU0 287 aa11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 RFPL4AL1F8VTS6 287 aa11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 S100A4P26447 101 aaKnown RBP11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 DGAT2L6Q6ZPD8 337 aa11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 OR5AP2Q8NGF4 316 aa11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 KISS1RQ969F8 398 aaPredicted RBP11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 C2orf50Q96LR7 162 aa11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 PHF7Q9BWX1 381 aaPredicted RBP11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 K7ESM1 405 aa11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 TNFSF15O95150 251 aa11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 BAMBIQ13145 260 aa11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 ASTLQ6HA08 431 aaPredicted RBP11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 CXorf58Q96LI9 332 aa11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 ASB16Q96NS5 453 aa11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 CABLES2Q9BTV7 478 aa11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 A0A0B4J203 849 aa11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 A0A1W2PNR3 127 aa11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 TMEM127O75204 238 aa11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 ABCD3P28288 659 aa11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 FUT6P51993 359 aa11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 PNLIPRP3Q17RR3 467 aa11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 ELFN2Q5R3F8 820 aa11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 SMIM19Q96E16 107 aa11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 ONECUT1Q9UBC0 465 aa11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 HDGFL3Q9Y3E1 203 aa11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 COL16A1Q07092 1604 aaPredicted RBP11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 SCGB1C2P0DMR2 95 aa11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 FABP9Q0Z7S8 132 aa11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 TMEM97Q5BJF2 176 aa11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 TRNP1Q6NT89 227 aa11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 FBXL14Q8N1E6 418 aa11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 DPF1Q92782 380 aa11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 WBP2Q969T9 261 aa11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 PIAS2O75928 621 aa11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 CLDN15P56746 228 aa11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 SYS1Q8N2H4 156 aa11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 NIT2Q9NQR4 276 aa11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 INSM1Q01101 510 aaPredicted RBP11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 PRR27Q6MZM9 219 aa11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 SSX7Q7RTT5 188 aa11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 MAVSQ7Z434 540 aa11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 LRRTM1Q86UE6 522 aa11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 TMEM9BQ9NQ34 198 aa11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 CLEC1BQ9P126 229 aa11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 PPT2Q9UMR5 302 aa11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 B3GALT4O96024 378 aa11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 CRYABP02511 175 aaKnown RBP11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 ACSM4P0C7M7 580 aa11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 SLC25A4P12235 298 aa11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 ZNF26P17031 533 aaPredicted RBP11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 RPL7P18124 248 aaKnown RBP11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 TPPP2P59282 170 aa11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 XKR7Q5GH72 579 aa11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 TIGD3Q6B0B8 471 aa11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 MOB3BQ86TA1 216 aa11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 AMIGO3Q86WK7 504 aa11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 LILRA3Q8N6C8 439 aaPredicted RBP11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 KLHDC9Q8NEP7 349 aa11.6□□□□□ -0.55
CCDC88C-204ENST00000389857 ARRDC5A6NEK1 342 aa11.59□□□□□ -0.55
CCDC88C-204ENST00000389857 SNRPGP15A8MWD9 76 aa11.59□□□□□ -0.55
CCDC88C-204ENST00000389857 ICMTO60725 284 aa11.59□□□□□ -0.55
CCDC88C-204ENST00000389857 LYG2Q86SG7 212 aa11.59□□□□□ -0.55
CCDC88C-204ENST00000389857 EVPLQ92817 2033 aa11.59□□□□□ -0.55
CCDC88C-204ENST00000389857 CLEC18AA5D8T8 446 aa11.59□□□□□ -0.55
CCDC88C-204ENST00000389857 TFAP2AP05549 437 aa11.59□□□□□ -0.55
CCDC88C-204ENST00000389857 PNLIPRP2P54317 469 aa11.59□□□□□ -0.55
CCDC88C-204ENST00000389857 SMAD4Q13485 552 aaKnown RBP11.59□□□□□ -0.55
CCDC88C-204ENST00000389857 VMA21Q3ZAQ7 101 aa11.59□□□□□ -0.55
CCDC88C-204ENST00000389857 VWA2Q5GFL6 755 aa11.59□□□□□ -0.55
CCDC88C-204ENST00000389857 CLEC18CQ8NCF0 446 aa11.59□□□□□ -0.55
CCDC88C-204ENST00000389857 ROBO4Q8WZ75 1007 aa11.59□□□□□ -0.55
CCDC88C-204ENST00000389857 LIMS3P0CW19 117 aa11.59□□□□□ -0.55
CCDC88C-204ENST00000389857 LIMS4P0CW20 117 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms