RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 SPACA1Q9HBV2 294 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 SIDT1Q9NXL6 827 aaKnown RBP4.98□□□□□ -1.61
CSDE1-202ENST00000339438 TCFL5Q9UL49 500 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 A0A087WWC5 75 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 TGIF2-C20orf24A0A0A6YYL0 155 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 A0A1B0GW64 132 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 TVP23AA6NH52 213 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 ZNF727A8MUV8 499 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 UPK3AO75631 287 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 KLF8O95600 359 aaPredicted RBP4.98□□□□□ -1.61
CSDE1-202ENST00000339438 AMBPP02760 352 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 IFNGR2P38484 337 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 PSMB10P40306 273 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 TAS2R41P59536 307 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 COTL1Q14019 142 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 PCK2Q16822 640 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 TMEM220Q6QAJ8 160 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 ZNF836Q6ZNA1 936 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 HIST2H3AQ71DI3 136 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 OR13D1Q8NGV5 346 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 OR8S1Q8NH09 359 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 ZNF563Q8TA94 476 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 RSC1A1Q92681 617 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 ARRDC3Q96B67 414 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 MOAP1Q96BY2 351 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 BMFQ96LC9 184 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 NEUROD4Q9HD90 331 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 H2AFY2Q9P0M6 372 aaPredicted RBP4.98□□□□□ -1.61
CSDE1-202ENST00000339438 KLK13Q9UKR3 277 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 ABCA7Q8IZY2 2146 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 ETV2O00321 342 aaPredicted RBP4.98□□□□□ -1.61
CSDE1-202ENST00000339438 GPRIN2O60269 458 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 OR2C1O95371 312 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 DCNP07585 359 aaKnown RBP4.98□□□□□ -1.61
CSDE1-202ENST00000339438 HTR2CP28335 458 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 DHPSP49366 369 aaPredicted RBP4.98□□□□□ -1.61
CSDE1-202ENST00000339438 RAB1AP62820 205 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 POLR2LP62875 67 aaKnown RBP4.98□□□□□ -1.61
CSDE1-202ENST00000339438 ACTC1P68032 377 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 ACTA1P68133 377 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 HSPB3Q12988 150 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 ZNF774Q6NX45 483 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 TEX38Q6PEX7 206 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 TPRG1Q6ZUI0 275 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 TTLL10Q6ZVT0 673 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 CPEB3Q8NE35 698 aaKnown RBP4.98□□□□□ -1.61
CSDE1-202ENST00000339438 SUN3Q8TAQ9 357 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 DCUN1D4Q92564 292 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 SLC41A3Q96GZ6 507 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 CAMK1GQ96NX5 476 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 DIRC2Q96SL1 478 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 G6PC3Q9BUM1 346 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 SGPP1Q9BX95 441 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 DPH1Q9BZG8 443 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 TPSD1Q9BZJ3 242 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 AICDAQ9GZX7 198 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 GLIPR2Q9H4G4 154 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 MRPS33Q9Y291 106 aaKnown RBP4.98□□□□□ -1.61
CSDE1-202ENST00000339438 ZNF281Q9Y2X9 895 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 OR1A2Q9Y585 309 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 MMP24Q9Y5R2 645 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 HEATR5BQ9P2D3 2071 aa4.98□□□□□ -1.61
CSDE1-202ENST00000339438 KIR2DL5BA0A0G2JN68 375 aa4.97□□□□□ -1.61
CSDE1-202ENST00000339438 KIR2DL5BA0A0G2JPC4 375 aa4.97□□□□□ -1.61
CSDE1-202ENST00000339438 CENPVL1A0A0U1RR11 272 aa4.97□□□□□ -1.61
CSDE1-202ENST00000339438 IGLON5A6NGN9 336 aa4.97□□□□□ -1.61
CSDE1-202ENST00000339438 ADAM10O14672 748 aa4.97□□□□□ -1.61
CSDE1-202ENST00000339438 ZNF217O75362 1048 aa4.97□□□□□ -1.61
CSDE1-202ENST00000339438 RAB3DO95716 219 aa4.97□□□□□ -1.61
CSDE1-202ENST00000339438 ABHD16AO95870 558 aa4.97□□□□□ -1.61
CSDE1-202ENST00000339438 CSTBP04080 98 aaKnown RBP4.97□□□□□ -1.61
CSDE1-202ENST00000339438 OR4A8P0C604 315 aa4.97□□□□□ -1.61
CSDE1-202ENST00000339438 METTL15P1P0C7V9 234 aa4.97□□□□□ -1.61
CSDE1-202ENST00000339438 LIPCP11150 499 aa4.97□□□□□ -1.61
CSDE1-202ENST00000339438 HOXB2P14652 356 aa4.97□□□□□ -1.61
CSDE1-202ENST00000339438 BUD31P41223 144 aaPredicted RBP4.97□□□□□ -1.61
CSDE1-202ENST00000339438 TSFMP43897 325 aaKnown RBP4.97□□□□□ -1.61
CSDE1-202ENST00000339438 GPR1P46091 355 aa4.97□□□□□ -1.61
CSDE1-202ENST00000339438 RPS10P46783 165 aaKnown RBP4.97□□□□□ -1.61
CSDE1-202ENST00000339438 HNRNPA1L2Q32P51 320 aaKnown RBP4.97□□□□□ -1.61
CSDE1-202ENST00000339438 EXOSC6Q5RKV6 272 aaKnown RBP4.97□□□□□ -1.61
CSDE1-202ENST00000339438 AWAT2Q6E213 333 aa4.97□□□□□ -1.61
CSDE1-202ENST00000339438 TMEM205Q6UW68 189 aa4.97□□□□□ -1.61
CSDE1-202ENST00000339438 Q6ZRG5 221 aa4.97□□□□□ -1.61
CSDE1-202ENST00000339438 THNSL2Q86YJ6 484 aa4.97□□□□□ -1.61
CSDE1-202ENST00000339438 KIR2DL5AQ8N109 375 aa4.97□□□□□ -1.61
CSDE1-202ENST00000339438 AMER3Q8N944 861 aa4.97□□□□□ -1.61
CSDE1-202ENST00000339438 OR13C2Q8NGS9 318 aa4.97□□□□□ -1.61
CSDE1-202ENST00000339438 OR4K15Q8NH41 348 aa4.97□□□□□ -1.61
CSDE1-202ENST00000339438 ST7LQ8TDW4 575 aa4.97□□□□□ -1.61
CSDE1-202ENST00000339438 MCHR2Q969V1 340 aa4.97□□□□□ -1.61
CSDE1-202ENST00000339438 ARSGQ96EG1 525 aa4.97□□□□□ -1.61
CSDE1-202ENST00000339438 PRRX2Q99811 253 aa4.97□□□□□ -1.61
CSDE1-202ENST00000339438 OR2AG1Q9H205 316 aa4.97□□□□□ -1.61
CSDE1-202ENST00000339438 SRMSQ9H3Y6 488 aa4.97□□□□□ -1.61
CSDE1-202ENST00000339438 PDE7BQ9NP56 450 aa4.97□□□□□ -1.61
CSDE1-202ENST00000339438 FRRS1LQ9P0K9 344 aa4.97□□□□□ -1.61
CSDE1-202ENST00000339438 SERTAD3Q9UJW9 196 aa4.97□□□□□ -1.61
CSDE1-202ENST00000339438 UNC119BA6NIH7 251 aa4.97□□□□□ -1.61
CSDE1-202ENST00000339438 UMAD1C9J7I0 102 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms