RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 IKZF1Q13422 519 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 KLF9Q13886 244 aaPredicted RBP4.52□□□□□ -1.69
VPS13D-213ENST00000613099 PNLIPRP3Q17RR3 467 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 RGMBQ6NW40 437 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 C19orf47Q8N9M1 422 aaKnown RBP4.52□□□□□ -1.69
VPS13D-213ENST00000613099 OR4F5Q8NH21 305 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 NINJ1Q92982 152 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 OR4F4Q96R69 305 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 CLEC4EQ9ULY5 219 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 HIDE1A8MVS5 230 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 SOCS5O75159 536 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 STC2O76061 302 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 SNHG28P0DPA3 235 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 LIMS1P48059 325 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 FOXA1P55317 472 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 SLBPQ14493 270 aaKnown RBP eCLIP4.52□□□□□ -1.69
VPS13D-213ENST00000613099 LINC00303Q3SY05 128 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 TP53I3Q53FA7 332 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 OTOP2Q7RTS6 562 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 OR9A1PQ8NGU1 263 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 SMIM19Q96E16 107 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 ST6GALNAC1Q9NSC7 600 aaPredicted RBP4.52□□□□□ -1.69
VPS13D-213ENST00000613099 KCNE5Q9UJ90 142 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 MOKQ9UQ07 419 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 OSGIN2Q9Y236 505 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 TRAV39A0A0B4J263 110 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 LOC102723971A0A1B0GUV8 181 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 B3GALT2O43825 422 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 ZNF43P17038 809 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 NKAIN3Q8N8D7 197 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 SCDO00767 359 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 CFHP08603 1231 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 GDF5P43026 501 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 KIR3DL2P43630 455 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 RING1Q06587 406 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 PIN1Q13526 163 aaPredicted RBP4.52□□□□□ -1.69
VPS13D-213ENST00000613099 NECAP1Q8NC96 275 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 FAM171A2A8MVW0 826 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 MBPP02686 304 aaPredicted RBP4.52□□□□□ -1.69
VPS13D-213ENST00000613099 GJB1P08034 283 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 SCAND1P57086 179 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 ENTPD8Q5MY95 495 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 OGFOD3Q6PK18 319 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 MBD3L1Q8WWY6 194 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 RAB33BQ9H082 229 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 SH3BGRL3Q9H299 93 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 MSL2Q9HCI7 577 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 HAO2Q9NYQ3 351 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 MMACHCQ9Y4U1 282 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 FXYD1O00168 92 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 CRISP2P16562 243 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 BCL6P41182 706 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 JOSD1Q15040 202 aaPredicted RBP4.52□□□□□ -1.69
VPS13D-213ENST00000613099 TIGITQ495A1 244 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 SLC22A6Q4U2R8 563 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 ZNF687Q8N1G0 1237 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 EID2BQ96D98 161 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 WDR92Q96MX6 357 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 EHFQ9NZC4 300 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 USP22Q9UPT9 525 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 HELZP42694 1942 aaKnown RBP4.52□□□□□ -1.69
VPS13D-213ENST00000613099 TRIP12Q14669 1992 aaPredicted RBP4.52□□□□□ -1.69
VPS13D-213ENST00000613099 A0A1W2PPE2 198 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 PMS2P1A4D2B8 440 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 DHRS7CA6NNS2 312 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 ZNF264O43296 627 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 GPR32O75388 356 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 CDS2O95674 445 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 ESDP10768 282 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 ST6GAL1P15907 406 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 FCARP24071 287 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 ZBTB25P24278 435 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 MPGP29372 298 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 DCTDP32321 178 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 MC5RP33032 325 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 GAB1Q13480 694 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 SYPL2Q5VXT5 272 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 ATRAIDQ6UW56 229 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 ZFP62Q8NB50 900 aaPredicted RBP4.52□□□□□ -1.69
VPS13D-213ENST00000613099 OR52B6Q8NGF0 335 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 PDLIM5Q96HC4 596 aaKnown RBP4.52□□□□□ -1.69
VPS13D-213ENST00000613099 BCO2Q9BYV7 579 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 EMC8O43402 210 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 GLSO94925 669 aaPredicted RBP4.52□□□□□ -1.69
VPS13D-213ENST00000613099 NDUFB2O95178 105 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 AMD1P17707 334 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 TMEM179BQ7Z7N9 219 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 FAM181AQ8N9Y4 354 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 DTWD2Q8NBA8 298 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 CENPMQ9NSP4 180 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 MRPS28Q9Y2Q9 187 aaKnown RBP4.52□□□□□ -1.69
VPS13D-213ENST00000613099 MTCH2Q9Y6C9 303 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 TRIOBPQ9H2D6 2365 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 MEX3AA1L020 520 aaKnown RBP4.52□□□□□ -1.69
VPS13D-213ENST00000613099 CD14P08571 375 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 GPM6BQ13491 265 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 PSMG4Q5JS54 123 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 LHX4Q969G2 390 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 SERINC2Q96SA4 455 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 SFXN1Q9H9B4 322 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms