RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 ABHD6Q9BV23 337 aa13.69□□□□□ -0.22
TRIM28-213ENST00000598355 OSBPL10Q9BXB5 764 aa13.69□□□□□ -0.22
TRIM28-213ENST00000598355 GABARAPL3Q9BY60 117 aa13.69□□□□□ -0.22
TRIM28-213ENST00000598355 TMEM160Q9NX00 188 aa13.69□□□□□ -0.22
TRIM28-213ENST00000598355 ENOPH1Q9UHY7 261 aa13.69□□□□□ -0.22
TRIM28-213ENST00000598355 CCDC182A6NF36 153 aa13.68□□□□□ -0.22
TRIM28-213ENST00000598355 SPRY3O43610 288 aa13.68□□□□□ -0.22
TRIM28-213ENST00000598355 ZNF16P17020 682 aaPredicted RBP13.68□□□□□ -0.22
TRIM28-213ENST00000598355 GPR6P46095 362 aaPredicted RBP13.68□□□□□ -0.22
TRIM28-213ENST00000598355 GK2Q14410 553 aaPredicted RBP13.68□□□□□ -0.22
TRIM28-213ENST00000598355 TSTQ16762 297 aaKnown RBP13.68□□□□□ -0.22
TRIM28-213ENST00000598355 SNAI3Q3KNW1 292 aa13.68□□□□□ -0.22
TRIM28-213ENST00000598355 SPRNQ5BIV9 151 aa13.68□□□□□ -0.22
TRIM28-213ENST00000598355 CXXC5Q7LFL8 322 aaKnown RBP13.68□□□□□ -0.22
TRIM28-213ENST00000598355 SHFQ7M4L6 423 aa13.68□□□□□ -0.22
TRIM28-213ENST00000598355 PRSS45Q7RTY3 260 aa13.68□□□□□ -0.22
TRIM28-213ENST00000598355 ERI1Q8IV48 349 aaKnown RBP13.68□□□□□ -0.22
TRIM28-213ENST00000598355 OR8G5Q8NG78 346 aa13.68□□□□□ -0.22
TRIM28-213ENST00000598355 OTOSQ8NHW6 89 aa13.68□□□□□ -0.22
TRIM28-213ENST00000598355 ZMYND19Q96E35 227 aaPredicted RBP13.68□□□□□ -0.22
TRIM28-213ENST00000598355 ELMOD3Q96FG2 381 aa13.68□□□□□ -0.22
TRIM28-213ENST00000598355 AMELYQ99218 206 aa13.68□□□□□ -0.22
TRIM28-213ENST00000598355 CIB1Q99828 191 aa13.68□□□□□ -0.22
TRIM28-213ENST00000598355 SLC30A2Q9BRI3 323 aa13.68□□□□□ -0.22
TRIM28-213ENST00000598355 TEX12Q9BXU0 123 aa13.68□□□□□ -0.22
TRIM28-213ENST00000598355 OR51V1Q9H2C8 321 aa13.68□□□□□ -0.22
TRIM28-213ENST00000598355 TOR3AQ9H497 397 aa13.68□□□□□ -0.22
TRIM28-213ENST00000598355 CACNG2Q9Y698 323 aa13.68□□□□□ -0.22
TRIM28-213ENST00000598355 LRP5LA4QPB2 252 aa13.67□□□□□ -0.22
TRIM28-213ENST00000598355 PRKYO43930 277 aa13.67□□□□□ -0.22
TRIM28-213ENST00000598355 IGFBP5P24593 272 aa13.67□□□□□ -0.22
TRIM28-213ENST00000598355 IL2RGP31785 369 aa13.67□□□□□ -0.22
TRIM28-213ENST00000598355 OPRL1P41146 370 aa13.67□□□□□ -0.22
TRIM28-213ENST00000598355 GRB2P62993 217 aaKnown RBP13.67□□□□□ -0.22
TRIM28-213ENST00000598355 EIF2B1Q14232 305 aaKnown RBP13.67□□□□□ -0.22
TRIM28-213ENST00000598355 CYB5R2Q6BCY4 276 aa13.67□□□□□ -0.22
TRIM28-213ENST00000598355 OR2T2Q6IF00 324 aa13.67□□□□□ -0.22
TRIM28-213ENST00000598355 SPSB4Q96A44 273 aa13.67□□□□□ -0.22
TRIM28-213ENST00000598355 MSI2Q96DH6 328 aaKnown RBP13.67□□□□□ -0.22
TRIM28-213ENST00000598355 PLEKHA8Q96JA3 519 aa13.67□□□□□ -0.22
TRIM28-213ENST00000598355 PKP2Q99959 881 aa13.67□□□□□ -0.22
TRIM28-213ENST00000598355 COPS4Q9BT78 406 aa13.67□□□□□ -0.22
TRIM28-213ENST00000598355 PRRG3Q9BZD7 231 aa13.67□□□□□ -0.22
TRIM28-213ENST00000598355 EGLN1Q9GZT9 426 aa13.67□□□□□ -0.22
TRIM28-213ENST00000598355 SEMA6AQ9H2E6 1030 aa13.67□□□□□ -0.22
TRIM28-213ENST00000598355 DECR2Q9NUI1 292 aa13.67□□□□□ -0.22
TRIM28-213ENST00000598355 TVP23BQ9NYZ1 205 aa13.67□□□□□ -0.22
TRIM28-213ENST00000598355 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.67□□□□□ -0.22
TRIM28-213ENST00000598355 IL19Q9UHD0 177 aa13.67□□□□□ -0.22
TRIM28-213ENST00000598355 C5orf63A6NC05 138 aa13.66□□□□□ -0.22
TRIM28-213ENST00000598355 A8MV72 311 aaPredicted RBP13.66□□□□□ -0.22
TRIM28-213ENST00000598355 E9PQ18 207 aa13.66□□□□□ -0.22
TRIM28-213ENST00000598355 WNT9BO14905 357 aa13.66□□□□□ -0.22
TRIM28-213ENST00000598355 MLNRO43193 412 aa13.66□□□□□ -0.22
TRIM28-213ENST00000598355 SELENOFO60613 162 aa13.66□□□□□ -0.22
TRIM28-213ENST00000598355 CDC14BO60729 498 aa13.66□□□□□ -0.22
TRIM28-213ENST00000598355 CRLF1O75462 422 aa13.66□□□□□ -0.22
TRIM28-213ENST00000598355 LCATP04180 440 aa13.66□□□□□ -0.22
TRIM28-213ENST00000598355 SELEP16581 610 aa13.66□□□□□ -0.22
TRIM28-213ENST00000598355 TNFAIP6P98066 277 aaPredicted RBP13.66□□□□□ -0.22
TRIM28-213ENST00000598355 SNAPC1Q16533 368 aa13.66□□□□□ -0.22
TRIM28-213ENST00000598355 ZNF454Q8N9F8 522 aa13.66□□□□□ -0.22
TRIM28-213ENST00000598355 CLDND2Q8NHS1 167 aa13.66□□□□□ -0.22
TRIM28-213ENST00000598355 OTULINQ96BN8 352 aa13.66□□□□□ -0.22
TRIM28-213ENST00000598355 REPIN1Q9BWE0 567 aaKnown RBP13.66□□□□□ -0.22
TRIM28-213ENST00000598355 OPA3Q9H6K4 179 aa13.66□□□□□ -0.22
TRIM28-213ENST00000598355 SVEP1Q4LDE5 3571 aa13.66□□□□□ -0.22
TRIM28-213ENST00000598355 WNK2Q9Y3S1 2297 aa13.65□□□□□ -0.22
TRIM28-213ENST00000598355 CLDN25C9JDP6 229 aa13.65□□□□□ -0.22
TRIM28-213ENST00000598355 ALPLP05186 524 aa13.65□□□□□ -0.22
TRIM28-213ENST00000598355 SLC15A1P46059 708 aa13.65□□□□□ -0.22
TRIM28-213ENST00000598355 SLC6A9P48067 706 aa13.65□□□□□ -0.22
TRIM28-213ENST00000598355 CDH15P55291 814 aa13.65□□□□□ -0.22
TRIM28-213ENST00000598355 LMO4P61968 165 aa13.65□□□□□ -0.22
TRIM28-213ENST00000598355 ZNF92Q03936 586 aa13.65□□□□□ -0.22
TRIM28-213ENST00000598355 APOFQ13790 326 aa13.65□□□□□ -0.22
TRIM28-213ENST00000598355 HFEQ30201 348 aa13.65□□□□□ -0.22
TRIM28-213ENST00000598355 KLHL12Q53G59 568 aa13.65□□□□□ -0.22
TRIM28-213ENST00000598355 AADACL4Q5VUY2 407 aa13.65□□□□□ -0.22
TRIM28-213ENST00000598355 OR5AS1Q8N127 324 aa13.65□□□□□ -0.22
TRIM28-213ENST00000598355 ZNF283Q8N7M2 679 aa13.65□□□□□ -0.22
TRIM28-213ENST00000598355 OR2Z1Q8NG97 314 aa13.65□□□□□ -0.22
TRIM28-213ENST00000598355 TMEM163Q8TC26 289 aa13.65□□□□□ -0.22
TRIM28-213ENST00000598355 TEAD3Q99594 435 aa13.65□□□□□ -0.22
TRIM28-213ENST00000598355 RBM4BQ9BQ04 359 aaKnown RBP13.65□□□□□ -0.22
TRIM28-213ENST00000598355 CENPMQ9NSP4 180 aa13.65□□□□□ -0.22
TRIM28-213ENST00000598355 USE1Q9NZ43 259 aa13.65□□□□□ -0.22
TRIM28-213ENST00000598355 KLHDC2Q9Y2U9 406 aa13.65□□□□□ -0.22
TRIM28-213ENST00000598355 WIPI2Q9Y4P8 454 aa13.65□□□□□ -0.22
TRIM28-213ENST00000598355 DOCK11Q5JSL3 2073 aa13.64□□□□□ -0.23
TRIM28-213ENST00000598355 SAC3D1A6NKF1 404 aa13.64□□□□□ -0.23
TRIM28-213ENST00000598355 M0R129 80 aa13.64□□□□□ -0.23
TRIM28-213ENST00000598355 TPD52L2O43399 206 aaKnown RBP13.64□□□□□ -0.23
TRIM28-213ENST00000598355 PPIHO43447 177 aaKnown RBP13.64□□□□□ -0.23
TRIM28-213ENST00000598355 XRCC2O43543 280 aa13.64□□□□□ -0.23
TRIM28-213ENST00000598355 LYNP07948 512 aa13.64□□□□□ -0.23
TRIM28-213ENST00000598355 TNFRSF1AP19438 455 aa13.64□□□□□ -0.23
TRIM28-213ENST00000598355 ALOX5APP20292 161 aa13.64□□□□□ -0.23
TRIM28-213ENST00000598355 TNFSF4P23510 183 aa13.64□□□□□ -0.23
TRIM28-213ENST00000598355 NAA10P41227 235 aaPredicted RBP13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms