RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 METTL17Q9H7H0 456 aaPredicted RBP17.4■□□□□ 0.38
CLIP3-206ENST00000593074 PTTG3PQ9NZH4 202 aa17.4■□□□□ 0.38
CLIP3-206ENST00000593074 ING4Q9UNL4 249 aa17.4■□□□□ 0.38
CLIP3-206ENST00000593074 NPTNQ9Y639 398 aa17.4■□□□□ 0.38
CLIP3-206ENST00000593074 LPLP06858 475 aa17.39■□□□□ 0.37
CLIP3-206ENST00000593074 CCL1P22362 96 aa17.39■□□□□ 0.37
CLIP3-206ENST00000593074 CYB561P49447 251 aa17.39■□□□□ 0.37
CLIP3-206ENST00000593074 PRKXP51817 358 aa17.39■□□□□ 0.37
CLIP3-206ENST00000593074 ACTBP60709 375 aa17.39■□□□□ 0.37
CLIP3-206ENST00000593074 ZP1P60852 638 aa17.39■□□□□ 0.37
CLIP3-206ENST00000593074 ACTG1P63261 375 aa17.39■□□□□ 0.37
CLIP3-206ENST00000593074 GLDNQ6ZMI3 551 aaPredicted RBP17.39■□□□□ 0.37
CLIP3-206ENST00000593074 BEST3Q8N1M1 668 aa17.39■□□□□ 0.37
CLIP3-206ENST00000593074 SLC22A24Q8N4F4 322 aa17.39■□□□□ 0.37
CLIP3-206ENST00000593074 PSMF1Q92530 271 aa17.39■□□□□ 0.37
CLIP3-206ENST00000593074 THOC3Q96J01 351 aaKnown RBP17.39■□□□□ 0.37
CLIP3-206ENST00000593074 SRXN1Q9BYN0 137 aa17.39■□□□□ 0.37
CLIP3-206ENST00000593074 NELFAQ9H3P2 528 aa17.39■□□□□ 0.37
CLIP3-206ENST00000593074 RANBP3Q9H6Z4 567 aaPredicted RBP17.39■□□□□ 0.37
CLIP3-206ENST00000593074 SCPEP1Q9HB40 452 aa17.39■□□□□ 0.37
CLIP3-206ENST00000593074 FOXD3Q9UJU5 478 aaPredicted RBP17.39■□□□□ 0.37
CLIP3-206ENST00000593074 LRRC3CA6NJW4 275 aa17.38■□□□□ 0.37
CLIP3-206ENST00000593074 AKAIN1P0CW23 69 aa17.38■□□□□ 0.37
CLIP3-206ENST00000593074 RAB3AP20336 220 aa17.38■□□□□ 0.37
CLIP3-206ENST00000593074 CTSSP25774 331 aa17.38■□□□□ 0.37
CLIP3-206ENST00000593074 CX3CR1P49238 355 aa17.38■□□□□ 0.37
CLIP3-206ENST00000593074 SUCLG1P53597 346 aaKnown RBP17.38■□□□□ 0.37
CLIP3-206ENST00000593074 RBMS2Q15434 407 aaKnown RBP17.38■□□□□ 0.37
CLIP3-206ENST00000593074 SLC25A25Q6KCM7 469 aa17.38■□□□□ 0.37
CLIP3-206ENST00000593074 C9orf62Q8N4C0 152 aa17.38■□□□□ 0.37
CLIP3-206ENST00000593074 ZIC4Q8N9L1 334 aa17.38■□□□□ 0.37
CLIP3-206ENST00000593074 SUMF1Q8NBK3 374 aa17.38■□□□□ 0.37
CLIP3-206ENST00000593074 OR52N4Q8NGI2 321 aa17.38■□□□□ 0.37
CLIP3-206ENST00000593074 NABP1Q96AH0 204 aa17.38■□□□□ 0.37
CLIP3-206ENST00000593074 TNFSF15O95150 251 aa17.38■□□□□ 0.37
CLIP3-206ENST00000593074 RAD52P43351 418 aa17.38■□□□□ 0.37
CLIP3-206ENST00000593074 OC90Q02509 493 aaPredicted RBP17.38■□□□□ 0.37
CLIP3-206ENST00000593074 Q6ZTK2 550 aa17.38■□□□□ 0.37
CLIP3-206ENST00000593074 OR4D10Q8NGI6 311 aa17.38■□□□□ 0.37
CLIP3-206ENST00000593074 KCNE4Q8WWG9 221 aa17.38■□□□□ 0.37
CLIP3-206ENST00000593074 SEH1LQ96EE3 360 aa17.38■□□□□ 0.37
CLIP3-206ENST00000593074 SF3B5Q9BWJ5 86 aaKnown RBP17.38■□□□□ 0.37
CLIP3-206ENST00000593074 TERTO14746 1132 aaKnown RBP17.37■□□□□ 0.37
CLIP3-206ENST00000593074 SMAD9O15198 467 aaKnown RBP17.37■□□□□ 0.37
CLIP3-206ENST00000593074 BPNT1O95861 308 aa17.37■□□□□ 0.37
CLIP3-206ENST00000593074 WDPCPO95876 746 aa17.37■□□□□ 0.37
CLIP3-206ENST00000593074 IL5P05113 134 aa17.37■□□□□ 0.37
CLIP3-206ENST00000593074 SLC2A1P11166 492 aa17.37■□□□□ 0.37
CLIP3-206ENST00000593074 GTF2F2P13984 249 aa17.37■□□□□ 0.37
CLIP3-206ENST00000593074 RAC3P60763 192 aa17.37■□□□□ 0.37
CLIP3-206ENST00000593074 PMPCAQ10713 525 aa17.37■□□□□ 0.37
CLIP3-206ENST00000593074 ENDOGQ14249 297 aaKnown RBP17.37■□□□□ 0.37
CLIP3-206ENST00000593074 TRIP6Q15654 476 aaKnown RBP17.37■□□□□ 0.37
CLIP3-206ENST00000593074 SGCAQ16586 387 aa17.37■□□□□ 0.37
CLIP3-206ENST00000593074 OR10K2Q6IF99 312 aa17.37■□□□□ 0.37
CLIP3-206ENST00000593074 JMJD6Q6NYC1 403 aaPredicted RBP17.37■□□□□ 0.37
CLIP3-206ENST00000593074 ZNF627Q7L945 461 aa17.37■□□□□ 0.37
CLIP3-206ENST00000593074 ABHD12BQ7Z5M8 362 aaPredicted RBP17.37■□□□□ 0.37
CLIP3-206ENST00000593074 INTS12Q96CB8 462 aaKnown RBP17.37■□□□□ 0.37
CLIP3-206ENST00000593074 NPDC1Q9NQX5 325 aaPredicted RBP17.37■□□□□ 0.37
CLIP3-206ENST00000593074 ZNF319Q9P2F9 582 aa17.37■□□□□ 0.37
CLIP3-206ENST00000593074 RAB22AQ9UL26 194 aa17.37■□□□□ 0.37
CLIP3-206ENST00000593074 HSPB11Q9Y547 144 aa17.37■□□□□ 0.37
CLIP3-206ENST00000593074 SDK2Q58EX2 2172 aa17.37■□□□□ 0.37
CLIP3-206ENST00000593074 MEIS3P1A6NDR6 274 aa17.36■□□□□ 0.37
CLIP3-206ENST00000593074 ZNF780AO75290 641 aaPredicted RBP17.36■□□□□ 0.37
CLIP3-206ENST00000593074 ERCC1P07992 297 aaPredicted RBP17.36■□□□□ 0.37
CLIP3-206ENST00000593074 CPN1P15169 458 aa17.36■□□□□ 0.37
CLIP3-206ENST00000593074 ZNF20P17024 532 aa17.36■□□□□ 0.37
CLIP3-206ENST00000593074 ENPP1P22413 925 aa17.36■□□□□ 0.37
CLIP3-206ENST00000593074 ANOS1P23352 680 aa17.36■□□□□ 0.37
CLIP3-206ENST00000593074 GUCA1AP43080 201 aaPredicted RBP17.36■□□□□ 0.37
CLIP3-206ENST00000593074 QRFPP83859 136 aa17.36■□□□□ 0.37
CLIP3-206ENST00000593074 OR13C9Q8NGT0 318 aa17.36■□□□□ 0.37
CLIP3-206ENST00000593074 OR14L1PQ8NHC6 308 aa17.36■□□□□ 0.37
CLIP3-206ENST00000593074 PNPLA2Q96AD5 504 aa17.36■□□□□ 0.37
CLIP3-206ENST00000593074 FAM117AQ9C073 453 aa17.36■□□□□ 0.37
CLIP3-206ENST00000593074 SLCO5A1Q9H2Y9 848 aa17.36■□□□□ 0.37
CLIP3-206ENST00000593074 GPR84Q9NQS5 396 aa17.36■□□□□ 0.37
CLIP3-206ENST00000593074 DLL4Q9NR61 685 aa17.36■□□□□ 0.37
CLIP3-206ENST00000593074 DHHO43323 396 aa17.36■□□□□ 0.37
CLIP3-206ENST00000593074 AKR7A2O43488 359 aa17.36■□□□□ 0.37
CLIP3-206ENST00000593074 ANXA7P20073 488 aaKnown RBP17.36■□□□□ 0.37
CLIP3-206ENST00000593074 SELENOPP49908 381 aa17.36■□□□□ 0.37
CLIP3-206ENST00000593074 HIST1H3AP68431 136 aa17.36■□□□□ 0.37
CLIP3-206ENST00000593074 MOGAT2Q3SYC2 334 aa17.36■□□□□ 0.37
CLIP3-206ENST00000593074 HIST2H3PS2Q5TEC6 136 aa17.36■□□□□ 0.37
CLIP3-206ENST00000593074 RAB12Q6IQ22 244 aa17.36■□□□□ 0.37
CLIP3-206ENST00000593074 ZNF782Q6ZMW2 699 aaPredicted RBP17.36■□□□□ 0.37
CLIP3-206ENST00000593074 HIST2H3AQ71DI3 136 aa17.36■□□□□ 0.37
CLIP3-206ENST00000593074 YRDCQ86U90 279 aaKnown RBP17.36■□□□□ 0.37
CLIP3-206ENST00000593074 GGNQ86UU5 652 aa17.36■□□□□ 0.37
CLIP3-206ENST00000593074 GRPEL2Q8TAA5 225 aa17.36■□□□□ 0.37
CLIP3-206ENST00000593074 SEC22CQ9BRL7 303 aa17.36■□□□□ 0.37
CLIP3-206ENST00000593074 FBLN5Q9UBX5 448 aa17.36■□□□□ 0.37
CLIP3-206ENST00000593074 SLC5A6Q9Y289 635 aa17.36■□□□□ 0.37
CLIP3-206ENST00000593074 SNRPGP15A8MWD9 76 aa17.35■□□□□ 0.37
CLIP3-206ENST00000593074 CD3DP04234 171 aa17.35■□□□□ 0.37
CLIP3-206ENST00000593074 UNC119Q13432 240 aa17.35■□□□□ 0.37
CLIP3-206ENST00000593074 ZNF626Q68DY1 528 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms