RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 COL22A1Q8NFW1 1626 aaPredicted RBP2.26□□□□□ -2.05
SMCHD1-204ENST00000581226 IGKV1-8A0A0C4DH67 115 aa2.25□□□□□ -2.05
SMCHD1-204ENST00000581226 A0A1B0GW55 424 aa2.25□□□□□ -2.05
SMCHD1-204ENST00000581226 LSM1O15116 133 aaKnown RBP2.25□□□□□ -2.05
SMCHD1-204ENST00000581226 EIF4E2O60573 245 aaKnown RBP2.25□□□□□ -2.05
SMCHD1-204ENST00000581226 DNAJB6O75190 326 aa2.25□□□□□ -2.05
SMCHD1-204ENST00000581226 WBP4O75554 376 aaKnown RBP2.25□□□□□ -2.05
SMCHD1-204ENST00000581226 ASGR1P07306 291 aa2.25□□□□□ -2.05
SMCHD1-204ENST00000581226 DUX4L2P0CJ85 424 aa2.25□□□□□ -2.05
SMCHD1-204ENST00000581226 DUX4L3P0CJ86 424 aa2.25□□□□□ -2.05
SMCHD1-204ENST00000581226 DUX4L5P0CJ88 424 aa2.25□□□□□ -2.05
SMCHD1-204ENST00000581226 DUX4L6P0CJ89 424 aa2.25□□□□□ -2.05
SMCHD1-204ENST00000581226 DUX4L7P0CJ90 424 aa2.25□□□□□ -2.05
SMCHD1-204ENST00000581226 OR8G3PP0DMU2 310 aa2.25□□□□□ -2.05
SMCHD1-204ENST00000581226 EIF2S2P20042 333 aaKnown RBP2.25□□□□□ -2.05
SMCHD1-204ENST00000581226 RBM34P42696 430 aaKnown RBP2.25□□□□□ -2.05
SMCHD1-204ENST00000581226 RPS5P46782 204 aaKnown RBP2.25□□□□□ -2.05
SMCHD1-204ENST00000581226 RPL23P62829 140 aaKnown RBP2.25□□□□□ -2.05
SMCHD1-204ENST00000581226 BZW1Q7L1Q6 419 aaKnown RBP2.25□□□□□ -2.05
SMCHD1-204ENST00000581226 CBR4Q8N4T8 237 aa2.25□□□□□ -2.05
SMCHD1-204ENST00000581226 TMEM105Q8N8V8 129 aa2.25□□□□□ -2.05
SMCHD1-204ENST00000581226 ST20-AS1Q8NBB2 130 aa2.25□□□□□ -2.05
SMCHD1-204ENST00000581226 C11orf72Q8NBR9 251 aa2.25□□□□□ -2.05
SMCHD1-204ENST00000581226 CAPSLQ8WWF8 208 aa2.25□□□□□ -2.05
SMCHD1-204ENST00000581226 GGTLC1Q9BX51 225 aa2.25□□□□□ -2.05
SMCHD1-204ENST00000581226 TEKT3Q9BXF9 490 aa2.25□□□□□ -2.05
SMCHD1-204ENST00000581226 EXO5Q9H790 373 aa2.25□□□□□ -2.05
SMCHD1-204ENST00000581226 MTCH1Q9NZJ7 389 aa2.25□□□□□ -2.05
SMCHD1-204ENST00000581226 GCNT4Q9P109 453 aa2.25□□□□□ -2.05
SMCHD1-204ENST00000581226 DUX4Q9UBX2 424 aa2.25□□□□□ -2.05
SMCHD1-204ENST00000581226 SLC17A4Q9Y2C5 497 aa2.25□□□□□ -2.05
SMCHD1-204ENST00000581226 CBY1Q9Y3M2 126 aa2.25□□□□□ -2.05
SMCHD1-204ENST00000581226 DOCK8Q8NF50 2099 aa2.24□□□□□ -2.05
SMCHD1-204ENST00000581226 WDR19Q8NEZ3 1342 aa2.24□□□□□ -2.05
SMCHD1-204ENST00000581226 IGHV7-4-1A0A0J9YVY3 117 aa2.24□□□□□ -2.05
SMCHD1-204ENST00000581226 A0A0J9YXV3 536 aa2.24□□□□□ -2.05
SMCHD1-204ENST00000581226 GABRR3A8MPY1 467 aa2.24□□□□□ -2.05
SMCHD1-204ENST00000581226 KRBOX1C9JBD0 128 aa2.24□□□□□ -2.05
SMCHD1-204ENST00000581226 NDUFAB1O14561 156 aa2.24□□□□□ -2.05
SMCHD1-204ENST00000581226 POLR1CO15160 346 aaPredicted RBP2.24□□□□□ -2.05
SMCHD1-204ENST00000581226 RAD51CO43502 376 aa2.24□□□□□ -2.05
SMCHD1-204ENST00000581226 FLOT1O75955 427 aa2.24□□□□□ -2.05
SMCHD1-204ENST00000581226 IGLV3-25P01717 112 aa2.24□□□□□ -2.05
SMCHD1-204ENST00000581226 ANXA8P13928 327 aa2.24□□□□□ -2.05
SMCHD1-204ENST00000581226 BCKDHBP21953 392 aa2.24□□□□□ -2.05
SMCHD1-204ENST00000581226 LOXP28300 417 aaPredicted RBP2.24□□□□□ -2.05
SMCHD1-204ENST00000581226 SYKP43405 635 aa2.24□□□□□ -2.05
SMCHD1-204ENST00000581226 GFERP55789 205 aa2.24□□□□□ -2.05
SMCHD1-204ENST00000581226 DGCR6Q14129 220 aa2.24□□□□□ -2.05
SMCHD1-204ENST00000581226 ZNF266Q14584 549 aa2.24□□□□□ -2.05
SMCHD1-204ENST00000581226 ANXA8L1Q5VT79 327 aa2.24□□□□□ -2.05
SMCHD1-204ENST00000581226 C12orf54Q6X4T0 127 aa2.24□□□□□ -2.05
SMCHD1-204ENST00000581226 FAM71AQ8IYT1 594 aa2.24□□□□□ -2.05
SMCHD1-204ENST00000581226 CSGALNACT2Q8N6G5 542 aa2.24□□□□□ -2.05
SMCHD1-204ENST00000581226 TSEN15Q8WW01 171 aaKnown RBP2.24□□□□□ -2.05
SMCHD1-204ENST00000581226 C11orf70Q9BRQ4 267 aa2.24□□□□□ -2.05
SMCHD1-204ENST00000581226 ANKRD60Q9BZ19 345 aa2.24□□□□□ -2.05
SMCHD1-204ENST00000581226 TMEM27Q9HBJ8 222 aa2.24□□□□□ -2.05
SMCHD1-204ENST00000581226 MED4Q9NPJ6 270 aa2.24□□□□□ -2.05
SMCHD1-204ENST00000581226 RABL2AQ9UBK7 228 aaPredicted RBP2.24□□□□□ -2.05
SMCHD1-204ENST00000581226 GPR179Q6PRD1 2367 aa2.24□□□□□ -2.05
SMCHD1-204ENST00000581226 ANKRD12Q6UB98 2062 aa2.23□□□□□ -2.05
SMCHD1-204ENST00000581226 NCBP2LA6PVI3 153 aaKnown RBP2.23□□□□□ -2.05
SMCHD1-204ENST00000581226 NDUFC2-KCTD14E9PQ53 114 aa2.23□□□□□ -2.05
SMCHD1-204ENST00000581226 SCAMP2O15127 329 aaKnown RBP2.23□□□□□ -2.05
SMCHD1-204ENST00000581226 EIF1BO60739 113 aaKnown RBP2.23□□□□□ -2.05
SMCHD1-204ENST00000581226 AQP8O94778 261 aa2.23□□□□□ -2.05
SMCHD1-204ENST00000581226 CD160O95971 181 aa2.23□□□□□ -2.05
SMCHD1-204ENST00000581226 CTRB1P17538 263 aa2.23□□□□□ -2.05
SMCHD1-204ENST00000581226 TUBG1P23258 451 aa2.23□□□□□ -2.05
SMCHD1-204ENST00000581226 IL32P24001 234 aa2.23□□□□□ -2.05
SMCHD1-204ENST00000581226 STOMP27105 288 aa2.23□□□□□ -2.05
SMCHD1-204ENST00000581226 EIF1P41567 113 aaKnown RBP2.23□□□□□ -2.05
SMCHD1-204ENST00000581226 RAB9AP51151 201 aa2.23□□□□□ -2.05
SMCHD1-204ENST00000581226 C21orf59P57076 290 aa2.23□□□□□ -2.05
SMCHD1-204ENST00000581226 SEMG2Q02383 582 aa2.23□□□□□ -2.05
SMCHD1-204ENST00000581226 TRAM2Q15035 370 aa2.23□□□□□ -2.05
SMCHD1-204ENST00000581226 IGFBP7Q16270 282 aa2.23□□□□□ -2.05
SMCHD1-204ENST00000581226 TMEM53Q6P2H8 277 aa2.23□□□□□ -2.05
SMCHD1-204ENST00000581226 MBOAT2Q6ZWT7 520 aa2.23□□□□□ -2.05
SMCHD1-204ENST00000581226 CBLN2Q8IUK8 224 aa2.23□□□□□ -2.05
SMCHD1-204ENST00000581226 OR56A4Q8NGH8 313 aa2.23□□□□□ -2.05
SMCHD1-204ENST00000581226 OR6Q1Q8NGQ2 317 aa2.23□□□□□ -2.05
SMCHD1-204ENST00000581226 LYPD6BQ8NI32 183 aa2.23□□□□□ -2.05
SMCHD1-204ENST00000581226 OR51E1Q8TCB6 317 aa2.23□□□□□ -2.05
SMCHD1-204ENST00000581226 MCUR1Q96AQ8 359 aa2.23□□□□□ -2.05
SMCHD1-204ENST00000581226 PRRC1Q96M27 445 aa2.23□□□□□ -2.05
SMCHD1-204ENST00000581226 RETNQ9HD89 108 aa2.23□□□□□ -2.05
SMCHD1-204ENST00000581226 MYOZ1Q9NP98 299 aaPredicted RBP2.23□□□□□ -2.05
SMCHD1-204ENST00000581226 TUBG2Q9NRH3 451 aa2.23□□□□□ -2.05
SMCHD1-204ENST00000581226 C21orf62Q9NYP8 219 aa2.23□□□□□ -2.05
SMCHD1-204ENST00000581226 TBC1D24Q9ULP9 559 aa2.23□□□□□ -2.05
SMCHD1-204ENST00000581226 MUC19Q7Z5P9 8384 aa2.22□□□□□ -2.05
SMCHD1-204ENST00000581226 BRCA1P38398 1863 aaKnown RBP2.22□□□□□ -2.05
SMCHD1-204ENST00000581226 TTC41PQ6P2S7 1318 aa2.22□□□□□ -2.05
SMCHD1-204ENST00000581226 SMIM26A0A096LP01 95 aa2.22□□□□□ -2.05
SMCHD1-204ENST00000581226 SYCE1LA8MT33 242 aa2.22□□□□□ -2.05
SMCHD1-204ENST00000581226 PLPP1O14494 284 aa2.22□□□□□ -2.05
SMCHD1-204ENST00000581226 GLSO94925 669 aaPredicted RBP2.22□□□□□ -2.05
SMCHD1-204ENST00000581226 PAHP00439 452 aa2.22□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms