RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, human

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS53-219	ENST00000576019	AP1AR	Q63HQ0	302 aa		4.63	□□□□□ -1.67
VPS53-219	ENST00000576019	CERS6	Q6ZMG9	384 aa		4.63	□□□□□ -1.67
VPS53-219	ENST00000576019	TMEM135	Q86UB9	458 aa		4.63	□□□□□ -1.67
VPS53-219	ENST00000576019	ZNF547	Q8IVP9	402 aa		4.63	□□□□□ -1.67
VPS53-219	ENST00000576019	ZBED8	Q8IZ13	594 aa		4.63	□□□□□ -1.67
VPS53-219	ENST00000576019	OR10V1	Q8NGI7	309 aa		4.63	□□□□□ -1.67
VPS53-219	ENST00000576019	PYROXD1	Q8WU10	500 aa		4.63	□□□□□ -1.67
VPS53-219	ENST00000576019	GTF3A	Q92664	365 aa	Known RBP	4.63	□□□□□ -1.67
VPS53-219	ENST00000576019	ZNF524	Q96C55	264 aa		4.63	□□□□□ -1.67
VPS53-219	ENST00000576019	CCDC124	Q96CT7	223 aa	Known RBP	4.63	□□□□□ -1.67
VPS53-219	ENST00000576019	CMTM7	Q96FZ5	175 aa		4.63	□□□□□ -1.67
VPS53-219	ENST00000576019	MED30	Q96HR3	178 aa		4.63	□□□□□ -1.67
VPS53-219	ENST00000576019	RNF170	Q96K19	258 aa		4.63	□□□□□ -1.67
VPS53-219	ENST00000576019	HSFY1	Q96LI6	401 aa		4.63	□□□□□ -1.67
VPS53-219	ENST00000576019	OR8B4	Q96RC9	309 aa		4.63	□□□□□ -1.67
VPS53-219	ENST00000576019	EPYC	Q99645	322 aa		4.63	□□□□□ -1.67
VPS53-219	ENST00000576019	MCHR1	Q99705	422 aa		4.63	□□□□□ -1.67
VPS53-219	ENST00000576019	RBM4B	Q9BQ04	359 aa	Known RBP	4.63	□□□□□ -1.67
VPS53-219	ENST00000576019	MRPL45	Q9BRJ2	306 aa	Known RBP	4.63	□□□□□ -1.67
VPS53-219	ENST00000576019	PELO	Q9BRX2	385 aa	Known RBP	4.63	□□□□□ -1.67
VPS53-219	ENST00000576019	MAP1LC3C	Q9BXW4	147 aa		4.63	□□□□□ -1.67
VPS53-219	ENST00000576019	KRTAP4-2	Q9BYR5	136 aa		4.63	□□□□□ -1.67
VPS53-219	ENST00000576019	NAA50	Q9GZZ1	169 aa	Known RBP	4.63	□□□□□ -1.67
VPS53-219	ENST00000576019	STMN3	Q9NZ72	180 aa		4.63	□□□□□ -1.67
VPS53-219	ENST00000576019	YARS2	Q9Y2Z4	477 aa	Known RBP	4.63	□□□□□ -1.67
VPS53-219	ENST00000576019	MRPS18B	Q9Y676	258 aa	Known RBP	4.63	□□□□□ -1.67
VPS53-219	ENST00000576019	TENM2	Q9NT68	2774 aa		4.63	□□□□□ -1.67
VPS53-219	ENST00000576019	USF3	Q68DE3	2245 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	CMYA5	Q8N3K9	4069 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	ABCA13	Q86UQ4	5058 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	FAM231B	A6NCW3	169 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	BLOC1S5-TXNDC5	H3BN57	136 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	SOX15	O60248	233 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	UGT1A9	O60656	530 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	SCRG1	O75711	98 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	IGHG1	P01857	330 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	CCL4	P13236	92 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	CTRB1	P17538	263 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	IL32	P24001	234 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	CALCR	P30988	508 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	PTGDS	P41222	190 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	FBXW4	P57775	412 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	LINC01547	P58512	204 aa	Predicted RBP	4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	GPX6	P59796	221 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	SNRPD1	P62314	119 aa	Known RBP	4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	CTAG1A	P78358	180 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	NCF4	Q15080	339 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	RPEL1	Q2QD12	228 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	PTPN20	Q4JDL3	420 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	CTRB2	Q6GPI1	263 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	FAM53A	Q6NSI3	398 aa	Predicted RBP	4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	PWWP2B	Q6NUJ5	590 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	PAMR1	Q6UXH9	720 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	GDPD4	Q6W3E5	623 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	C12orf54	Q6X4T0	127 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	ARC	Q7LC44	396 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	CYP4Z1	Q86W10	505 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	MCOLN2	Q8IZK6	566 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	LIX1	Q8N485	282 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	NUBPL	Q8TB37	319 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	ZNF519	Q8TB69	540 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	ZDHHC19	Q8WVZ1	309 aa	Predicted RBP	4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	RMND5B	Q96G75	393 aa	Predicted RBP	4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	ALS2CR12	Q96Q35	445 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	DDA1	Q9BW61	102 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	FAIM2	Q9BWQ8	316 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	OPN3	Q9H1Y3	402 aa	Predicted RBP	4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	CAB39L	Q9H9S4	337 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	ANKH	Q9HCJ1	492 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	ACP6	Q9NPH0	428 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	ABCC13	Q9NSE7	274 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	SAMSN1	Q9NSI8	373 aa	Known RBP	4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	B3GNT2	Q9NY97	397 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	WWOX	Q9NZC7	414 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	THAP10	Q9P2Z0	257 aa	Predicted RBP	4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	ABCD2	Q9UBJ2	740 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	RARRES3	Q9UL19	164 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	SAMD4A	Q9UPU9	718 aa	Known RBP	4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	L3MBTL1	Q9Y468	752 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	CPQ	Q9Y646	472 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019	SEC16A	O15027	2179 aa		4.62	□□□□□ -1.67
VPS53-219	ENST00000576019		A0A1B0GW55	424 aa		4.61	□□□□□ -1.67
VPS53-219	ENST00000576019		E7ENQ6	273 aa		4.61	□□□□□ -1.67
VPS53-219	ENST00000576019	CCL21	O00585	134 aa		4.61	□□□□□ -1.67
VPS53-219	ENST00000576019	FGF17	O60258	216 aa		4.61	□□□□□ -1.67
VPS53-219	ENST00000576019	SCN2B	O60939	215 aa		4.61	□□□□□ -1.67
VPS53-219	ENST00000576019	GPX5	O75715	221 aa		4.61	□□□□□ -1.67
VPS53-219	ENST00000576019	ACSM4	P0C7M7	580 aa		4.61	□□□□□ -1.67
VPS53-219	ENST00000576019	DUX4L2	P0CJ85	424 aa		4.61	□□□□□ -1.67
VPS53-219	ENST00000576019	DUX4L3	P0CJ86	424 aa		4.61	□□□□□ -1.67
VPS53-219	ENST00000576019	DUX4L4	P0CJ87	422 aa		4.61	□□□□□ -1.67
VPS53-219	ENST00000576019	DUX4L5	P0CJ88	424 aa		4.61	□□□□□ -1.67
VPS53-219	ENST00000576019	DUX4L6	P0CJ89	424 aa		4.61	□□□□□ -1.67
VPS53-219	ENST00000576019	DUX4L7	P0CJ90	424 aa		4.61	□□□□□ -1.67
VPS53-219	ENST00000576019	NEFH	P12036	1026 aa		4.61	□□□□□ -1.67
VPS53-219	ENST00000576019	F8A1	P23610	371 aa		4.61	□□□□□ -1.67
VPS53-219	ENST00000576019	IGFBP5	P24593	272 aa		4.61	□□□□□ -1.67
VPS53-219	ENST00000576019	CRAT	P43155	626 aa		4.61	□□□□□ -1.67
VPS53-219	ENST00000576019	BID	P55957	195 aa		4.61	□□□□□ -1.67
VPS53-219	ENST00000576019	NDUFV3	P56181	108 aa	Known RBP	4.61	□□□□□ -1.67

Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms