RNA–Protein interactions for RNA: ENST00000558155.1

SPG11-208, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-208	ENST00000558155	ERF	P50548	548 aa		4.25	□□□□□ -1.73
SPG11-208	ENST00000558155	RAD23A	P54725	363 aa		4.25	□□□□□ -1.73
SPG11-208	ENST00000558155	CTXN1	P60606	82 aa		4.25	□□□□□ -1.73
SPG11-208	ENST00000558155	MAB21L1	Q13394	359 aa		4.25	□□□□□ -1.73
SPG11-208	ENST00000558155	TOP3A	Q13472	1001 aa	Predicted RBP	4.25	□□□□□ -1.73
SPG11-208	ENST00000558155	AQP6	Q13520	282 aa		4.25	□□□□□ -1.73
SPG11-208	ENST00000558155	LRIF1	Q5T3J3	769 aa		4.25	□□□□□ -1.73
SPG11-208	ENST00000558155	PGBD2	Q6P3X8	592 aa		4.25	□□□□□ -1.73
SPG11-208	ENST00000558155	CCBE1	Q6UXH8	406 aa	Predicted RBP	4.25	□□□□□ -1.73
SPG11-208	ENST00000558155	PATL1	Q86TB9	770 aa	Known RBP	4.25	□□□□□ -1.73
SPG11-208	ENST00000558155	RBM45	Q8IUH3	476 aa	Known RBP	4.25	□□□□□ -1.73
SPG11-208	ENST00000558155	LYG1	Q8N1E2	194 aa		4.25	□□□□□ -1.73
SPG11-208	ENST00000558155	C10orf111	Q8N326	155 aa		4.25	□□□□□ -1.73
SPG11-208	ENST00000558155	PLPP7	Q8NBV4	271 aa		4.25	□□□□□ -1.73
SPG11-208	ENST00000558155	C11orf65	Q8NCR3	313 aa		4.25	□□□□□ -1.73
SPG11-208	ENST00000558155	BHLHE23	Q8NDY6	225 aa		4.25	□□□□□ -1.73
SPG11-208	ENST00000558155	SPRYD4	Q8WW59	207 aa	Predicted RBP	4.25	□□□□□ -1.73
SPG11-208	ENST00000558155	RASSF5	Q8WWW0	418 aa		4.25	□□□□□ -1.73
SPG11-208	ENST00000558155	SSX3	Q99909	188 aa		4.25	□□□□□ -1.73
SPG11-208	ENST00000558155	ARPC5L	Q9BPX5	153 aa		4.25	□□□□□ -1.73
SPG11-208	ENST00000558155	ECSIT	Q9BQ95	431 aa		4.25	□□□□□ -1.73
SPG11-208	ENST00000558155	PRSS27	Q9BQR3	290 aa		4.25	□□□□□ -1.73
SPG11-208	ENST00000558155	SLC22A4	Q9H015	551 aa		4.25	□□□□□ -1.73
SPG11-208	ENST00000558155	MMP28	Q9H239	520 aa		4.25	□□□□□ -1.73
SPG11-208	ENST00000558155	TOR3A	Q9H497	397 aa		4.25	□□□□□ -1.73
SPG11-208	ENST00000558155	RANBP3	Q9H6Z4	567 aa	Predicted RBP	4.25	□□□□□ -1.73
SPG11-208	ENST00000558155	SSU72	Q9NP77	194 aa	Known RBP	4.25	□□□□□ -1.73
SPG11-208	ENST00000558155	EMC7	Q9NPA0	242 aa		4.25	□□□□□ -1.73
SPG11-208	ENST00000558155	KCNK9	Q9NPC2	374 aa		4.25	□□□□□ -1.73
SPG11-208	ENST00000558155	THAP1	Q9NVV9	213 aa		4.25	□□□□□ -1.73
SPG11-208	ENST00000558155	SLC25A37	Q9NYZ2	338 aa		4.25	□□□□□ -1.73
SPG11-208	ENST00000558155	SLAMF8	Q9P0V8	285 aa		4.25	□□□□□ -1.73
SPG11-208	ENST00000558155	ONECUT1	Q9UBC0	465 aa		4.25	□□□□□ -1.73
SPG11-208	ENST00000558155	CTSZ	Q9UBR2	303 aa		4.25	□□□□□ -1.73
SPG11-208	ENST00000558155	RPUSD1	Q9UJJ7	312 aa	Known RBP	4.25	□□□□□ -1.73
SPG11-208	ENST00000558155	NOP16	Q9Y3C1	178 aa	Known RBP	4.25	□□□□□ -1.73
SPG11-208	ENST00000558155	MED31	Q9Y3C7	131 aa		4.25	□□□□□ -1.73
SPG11-208	ENST00000558155	MAB21L2	Q9Y586	359 aa		4.25	□□□□□ -1.73
SPG11-208	ENST00000558155	GMEB1	Q9Y692	573 aa		4.25	□□□□□ -1.73
SPG11-208	ENST00000558155		A0A1B0GWJ7	208 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	MEIOC	A2RUB1	952 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	OOEP	A6NGQ2	149 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155		E9PQ18	207 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155		H0YHG0	523 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	C3orf84	H3BNL1	204 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155		H3BUX3	64 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	XKRY	O14609	159 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	POLR3G	O15318	223 aa	Predicted RBP	4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	NDUFB3	O43676	98 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	GYPA	P02724	150 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	OPN1SW	P03999	348 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	SCG5	P05408	212 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	NHLRC4	P0CG21	123 aa	Predicted RBP	4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	IGLL1	P15814	213 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	ZNF26	P17031	533 aa	Predicted RBP	4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	HOXB9	P17482	250 aa	Predicted RBP	4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	IFNA8	P32881	189 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	UBE2E1	P51965	193 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	TAS2R41	P59536	307 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	STX1B	P61266	288 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	LSM6	P62312	80 aa	Known RBP	4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	MZT1	Q08AG7	82 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	ACSM1	Q08AH1	577 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	MALL	Q13021	153 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	DCTN2	Q13561	401 aa	Known RBP	4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	OR8G1	Q15617	311 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	MPPED2	Q15777	294 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	LY6E	Q16553	131 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	ANKDD1A	Q495B1	522 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	KLHL22	Q53GT1	634 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	CLEC12A	Q5QGZ9	265 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	BEND6	Q5SZJ8	279 aa	Predicted RBP	4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	PRAMEF6	Q5VXH4	476 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	C8orf86	Q6ZUL3	223 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	NKAIN4	Q8IVV8	208 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	MSRB3	Q8IXL7	192 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	LY6G5B	Q8NDX9	201 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	BEND2	Q8NDZ0	799 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	GPR32P1	Q8NGA4	272 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	OR9I1	Q8NGQ6	314 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	PFN4	Q8NHR9	129 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	PPP1R35	Q8TAP8	253 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	SLC7A13	Q8TCU3	470 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	LRRC8C	Q8TDW0	803 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	TMEM239	Q8WW34	195 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	ST8SIA4	Q92187	359 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	SLC7A6	Q92536	515 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	MAEL	Q96JY0	434 aa	Known RBP	4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	B9D2	Q9BPU9	175 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	KRTAP4-7	Q9BYR0	210 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	POLR2J2	Q9GZM3	115 aa	Known RBP	4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	NPFFR1	Q9GZQ6	430 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	POLR2J3	Q9H1A7	115 aa	Known RBP	4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	SEMA6A	Q9H2E6	1030 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	SMURF1	Q9HCE7	757 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	MED4	Q9NPJ6	270 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	C20orf141	Q9NUB4	165 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	VAPA	Q9P0L0	249 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	KAAG1	Q9UBP8	84 aa		4.24	□□□□□ -1.73
SPG11-208	ENST00000558155	GRHPR	Q9UBQ7	328 aa		4.24	□□□□□ -1.73

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