RNA–Protein interactions for RNA: ENST00000557076.5

SCFD1-223, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 743 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-223ENST00000557076 PAHP00439 452 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 OPN1SWP03999 348 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 FGF4P08620 206 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 SNRPAP09012 282 aaKnown RBP3.8□□□□□ -1.8
SCFD1-223ENST00000557076 QDPRP09417 244 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 RBMY1DP0C7P1 496 aaKnown RBP3.8□□□□□ -1.8
SCFD1-223ENST00000557076 PRG2P13727 222 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 NQO1P15559 274 aaKnown RBP3.8□□□□□ -1.8
SCFD1-223ENST00000557076 NCF2P19878 526 aaPredicted RBP3.8□□□□□ -1.8
SCFD1-223ENST00000557076 PTMSP20962 102 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 GSTM3P21266 225 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 CHATP28329 748 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 HOXD3P31249 432 aaPredicted RBP3.8□□□□□ -1.8
SCFD1-223ENST00000557076 PHBP35232 272 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 PMELP40967 661 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 SRP9P49458 86 aaKnown RBP3.8□□□□□ -1.8
SCFD1-223ENST00000557076 GDI2P50395 445 aaKnown RBP3.8□□□□□ -1.8
SCFD1-223ENST00000557076 BIDP55957 195 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 DNAJB13P59910 316 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 RPL38P63173 70 aaKnown RBP3.8□□□□□ -1.8
SCFD1-223ENST00000557076 HPCAP84074 193 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 HOXA4Q00056 320 aaPredicted RBP3.8□□□□□ -1.8
SCFD1-223ENST00000557076 HSF2Q03933 536 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 ACSM1Q08AH1 577 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 KCNJ8Q15842 424 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 SYPL1Q16563 259 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 HIST3H3Q16695 136 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 UGT3A2Q3SY77 523 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 RUNDC3AQ59EK9 446 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 TCTEX1D4Q5JR98 221 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 FAM209BQ5JX69 171 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 COMTD1Q86VU5 262 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 CLIP4Q8N3C7 705 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 KRTCAP2Q8N6L1 136 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 LSMEM1Q8N8F7 131 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 ANKFN1Q8N957 763 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 ATG16L2Q8NAA4 619 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 OR8J2Q8NGG1 315 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 OR13G1Q8NGZ3 307 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 C8orf46Q8TAG6 207 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 ZNF420Q8TAQ5 688 aaPredicted RBP3.8□□□□□ -1.8
SCFD1-223ENST00000557076 SLC7A13Q8TCU3 470 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 DNAJA4Q8WW22 397 aaPredicted RBP3.8□□□□□ -1.8
SCFD1-223ENST00000557076 PTP4A1Q93096 173 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 SLC38A4Q969I6 547 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 SLC35B4Q969S0 331 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 ZNF566Q969W8 418 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 ERGIC1Q969X5 290 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 CMBLQ96DG6 245 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 C4orf45Q96LM5 186 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 PPP3R2Q96LZ3 170 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 DDOQ99489 341 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 MCRIP2Q9BUT9 160 aaKnown RBP3.8□□□□□ -1.8
SCFD1-223ENST00000557076 CDCA4Q9BXL8 241 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 KCNN2Q9H2S1 579 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 ARMC7Q9H6L4 198 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 INPP5EQ9NRR6 644 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 MRPL39Q9NYK5 338 aaKnown RBP3.8□□□□□ -1.8
SCFD1-223ENST00000557076 PPP2R2CQ9Y2T4 447 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 DNAJC15Q9Y5T4 150 aa3.8□□□□□ -1.8
SCFD1-223ENST00000557076 IGKV1D-42A0A075B6H8 117 aa3.79□□□□□ -1.8
SCFD1-223ENST00000557076 EXOC1LA0A1B0GW35 172 aa3.79□□□□□ -1.8
SCFD1-223ENST00000557076 A0A1B0GWJ7 208 aa3.79□□□□□ -1.8
SCFD1-223ENST00000557076 CENPBD1B2RD01 187 aa3.79□□□□□ -1.8
SCFD1-223ENST00000557076 G3V2L1 256 aa3.79□□□□□ -1.8
SCFD1-223ENST00000557076 H3BUX3 64 aa3.79□□□□□ -1.8
SCFD1-223ENST00000557076 SOCS2O14508 198 aa3.79□□□□□ -1.8
SCFD1-223ENST00000557076 NPFFO15130 113 aa3.79□□□□□ -1.8
SCFD1-223ENST00000557076 SLC22A3O75751 556 aa3.79□□□□□ -1.8
SCFD1-223ENST00000557076 CLIC3O95833 236 aa3.79□□□□□ -1.8
SCFD1-223ENST00000557076 BGLAPP02818 100 aa3.79□□□□□ -1.8
SCFD1-223ENST00000557076 THY1P04216 161 aa3.79□□□□□ -1.8
SCFD1-223ENST00000557076 NR2F1P10589 423 aa3.79□□□□□ -1.8
SCFD1-223ENST00000557076 SOAT1P35610 550 aa3.79□□□□□ -1.8
SCFD1-223ENST00000557076 UBE2E1P51965 193 aa3.79□□□□□ -1.8
SCFD1-223ENST00000557076 ZNF133P52736 654 aaPredicted RBP3.79□□□□□ -1.8
SCFD1-223ENST00000557076 CLDN8P56748 225 aa3.79□□□□□ -1.8
SCFD1-223ENST00000557076 MRPS34P82930 218 aaKnown RBP3.79□□□□□ -1.8
SCFD1-223ENST00000557076 PSG4Q00888 419 aa3.79□□□□□ -1.8
SCFD1-223ENST00000557076 PTGR1Q14914 329 aa3.79□□□□□ -1.8
SCFD1-223ENST00000557076 GALNTL6Q49A17 601 aa3.79□□□□□ -1.8
SCFD1-223ENST00000557076 LIN52Q52LA3 116 aa3.79□□□□□ -1.8
SCFD1-223ENST00000557076 CFAP157Q5JU67 520 aa3.79□□□□□ -1.8
SCFD1-223ENST00000557076 FAM201AQ5SY85 155 aa3.79□□□□□ -1.8
SCFD1-223ENST00000557076 IL23RQ5VWK5 629 aa3.79□□□□□ -1.8
SCFD1-223ENST00000557076 SLC35D2Q76EJ3 337 aa3.79□□□□□ -1.8
SCFD1-223ENST00000557076 BTN2A1Q7KYR7 527 aa3.79□□□□□ -1.8
SCFD1-223ENST00000557076 PDZD9Q8IXQ8 264 aa3.79□□□□□ -1.8
SCFD1-223ENST00000557076 CLECL1Q8IZS7 167 aa3.79□□□□□ -1.8
SCFD1-223ENST00000557076 CNPY4Q8N129 248 aa3.79□□□□□ -1.8
SCFD1-223ENST00000557076 LRRC18Q8N456 261 aa3.79□□□□□ -1.8
SCFD1-223ENST00000557076 SPC24Q8NBT2 197 aa3.79□□□□□ -1.8
SCFD1-223ENST00000557076 LY6G5BQ8NDX9 201 aa3.79□□□□□ -1.8
SCFD1-223ENST00000557076 OR52P1PQ8NH57 321 aa3.79□□□□□ -1.8
SCFD1-223ENST00000557076 PRSS3P2Q8NHM4 247 aa3.79□□□□□ -1.8
SCFD1-223ENST00000557076 RP9Q8TA86 221 aaKnown RBP3.79□□□□□ -1.8
SCFD1-223ENST00000557076 MCHR2Q969V1 340 aa3.79□□□□□ -1.8
SCFD1-223ENST00000557076 COG8Q96MW5 612 aa3.79□□□□□ -1.8
SCFD1-223ENST00000557076 RCHY1Q96PM5 261 aa3.79□□□□□ -1.8
SCFD1-223ENST00000557076 EPYCQ99645 322 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms