RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 CYTIPO60759 359 aa11.21□□□□□ -0.61
VIPAS39-206ENST00000553888 RAF1P04049 648 aa11.21□□□□□ -0.61
VIPAS39-206ENST00000553888 ZNF708P17019 499 aa11.21□□□□□ -0.61
VIPAS39-206ENST00000553888 SPINK2P20155 84 aa11.21□□□□□ -0.61
VIPAS39-206ENST00000553888 PRSS12P56730 875 aa11.21□□□□□ -0.61
VIPAS39-206ENST00000553888 CLN3Q13286 438 aa11.21□□□□□ -0.61
VIPAS39-206ENST00000553888 RIN1Q13671 783 aa11.21□□□□□ -0.61
VIPAS39-206ENST00000553888 UBE2NLQ5JXB2 153 aa11.21□□□□□ -0.61
VIPAS39-206ENST00000553888 LUZP2Q86TE4 346 aa11.21□□□□□ -0.61
VIPAS39-206ENST00000553888 ZNF283Q8N7M2 679 aa11.21□□□□□ -0.61
VIPAS39-206ENST00000553888 FGFBP3Q8TAT2 258 aa11.21□□□□□ -0.61
VIPAS39-206ENST00000553888 TRIM63Q969Q1 353 aa11.21□□□□□ -0.61
VIPAS39-206ENST00000553888 CPNE4Q96A23 557 aaPredicted RBP11.21□□□□□ -0.61
VIPAS39-206ENST00000553888 BSNQ9UPA5 3926 aa11.21□□□□□ -0.61
VIPAS39-206ENST00000553888 H3BUI4 141 aa11.21□□□□□ -0.62
VIPAS39-206ENST00000553888 DNPH1O43598 174 aa11.21□□□□□ -0.62
VIPAS39-206ENST00000553888 CD46P15529 392 aa11.21□□□□□ -0.62
VIPAS39-206ENST00000553888 ACHEP22303 614 aa11.21□□□□□ -0.62
VIPAS39-206ENST00000553888 ARHGDIBP52566 201 aa11.21□□□□□ -0.62
VIPAS39-206ENST00000553888 FOXG1P55316 489 aaPredicted RBP11.21□□□□□ -0.62
VIPAS39-206ENST00000553888 PSMA6P60900 246 aaKnown RBP11.21□□□□□ -0.62
VIPAS39-206ENST00000553888 RSPO1Q2MKA7 263 aaPredicted RBP11.21□□□□□ -0.62
VIPAS39-206ENST00000553888 ZNF544Q6NX49 715 aa11.21□□□□□ -0.62
VIPAS39-206ENST00000553888 ZNF554Q86TJ5 538 aa11.21□□□□□ -0.62
VIPAS39-206ENST00000553888 TUSC5Q8IXB3 177 aa11.21□□□□□ -0.62
VIPAS39-206ENST00000553888 ELMOD2Q8IZ81 293 aa11.21□□□□□ -0.62
VIPAS39-206ENST00000553888 OR1J2Q8NGS2 313 aa11.21□□□□□ -0.62
VIPAS39-206ENST00000553888 CALHM2Q9HA72 323 aa11.21□□□□□ -0.62
VIPAS39-206ENST00000553888 A0A1B0GTI1 187 aa11.2□□□□□ -0.62
VIPAS39-206ENST00000553888 PCP4L1A6NKN8 68 aa11.2□□□□□ -0.62
VIPAS39-206ENST00000553888 KLRC4-KLRK1H3BQV0 150 aa11.2□□□□□ -0.62
VIPAS39-206ENST00000553888 SYT7O43581 403 aa11.2□□□□□ -0.62
VIPAS39-206ENST00000553888 ABOP16442 354 aa11.2□□□□□ -0.62
VIPAS39-206ENST00000553888 IGFBP3P17936 291 aaPredicted RBP11.2□□□□□ -0.62
VIPAS39-206ENST00000553888 GUCA1AP43080 201 aaPredicted RBP11.2□□□□□ -0.62
VIPAS39-206ENST00000553888 ZNF133P52736 654 aaPredicted RBP11.2□□□□□ -0.62
VIPAS39-206ENST00000553888 CEACAM16Q2WEN9 425 aa11.2□□□□□ -0.62
VIPAS39-206ENST00000553888 ABHD12BQ7Z5M8 362 aaPredicted RBP11.2□□□□□ -0.62
VIPAS39-206ENST00000553888 SETD6Q8TBK2 473 aa11.2□□□□□ -0.62
VIPAS39-206ENST00000553888 FAM71F1Q96KD3 344 aaPredicted RBP11.2□□□□□ -0.62
VIPAS39-206ENST00000553888 SPACA5Q96QH8 159 aa11.2□□□□□ -0.62
VIPAS39-206ENST00000553888 MRPL15Q9P015 296 aaKnown RBP11.2□□□□□ -0.62
VIPAS39-206ENST00000553888 SPRR3Q9UBC9 169 aa11.2□□□□□ -0.62
VIPAS39-206ENST00000553888 EFSO43281 561 aa11.2□□□□□ -0.62
VIPAS39-206ENST00000553888 HLA-DQB1P01920 261 aa11.2□□□□□ -0.62
VIPAS39-206ENST00000553888 ISG15P05161 165 aa11.2□□□□□ -0.62
VIPAS39-206ENST00000553888 TNFSF10P50591 281 aa11.2□□□□□ -0.62
VIPAS39-206ENST00000553888 RRADP55042 308 aa11.2□□□□□ -0.62
VIPAS39-206ENST00000553888 SFRP5Q5T4F7 317 aa11.2□□□□□ -0.62
VIPAS39-206ENST00000553888 TSPO2Q5TGU0 170 aa11.2□□□□□ -0.62
VIPAS39-206ENST00000553888 ZNF704Q6ZNC4 412 aaPredicted RBP11.2□□□□□ -0.62
VIPAS39-206ENST00000553888 FOXL2NBQ6ZUU3 175 aa11.2□□□□□ -0.62
VIPAS39-206ENST00000553888 ZFP62Q8NB50 900 aaPredicted RBP11.2□□□□□ -0.62
VIPAS39-206ENST00000553888 HAS2Q92819 552 aa11.2□□□□□ -0.62
VIPAS39-206ENST00000553888 EXO5Q9H790 373 aa11.2□□□□□ -0.62
VIPAS39-206ENST00000553888 GPR84Q9NQS5 396 aa11.2□□□□□ -0.62
VIPAS39-206ENST00000553888 CD2P06729 351 aa11.19□□□□□ -0.62
VIPAS39-206ENST00000553888 UBCP0CG48 685 aaKnown RBP11.19□□□□□ -0.62
VIPAS39-206ENST00000553888 CDK2P24941 298 aa11.19□□□□□ -0.62
VIPAS39-206ENST00000553888 SLC6A9P48067 706 aa11.19□□□□□ -0.62
VIPAS39-206ENST00000553888 INPP1P49441 399 aa11.19□□□□□ -0.62
VIPAS39-206ENST00000553888 LSM6P62312 80 aaKnown RBP11.19□□□□□ -0.62
VIPAS39-206ENST00000553888 TMEM244Q5VVB8 128 aa11.19□□□□□ -0.62
VIPAS39-206ENST00000553888 OR10K2Q6IF99 312 aa11.19□□□□□ -0.62
VIPAS39-206ENST00000553888 KRT74Q7RTS7 529 aa11.19□□□□□ -0.62
VIPAS39-206ENST00000553888 GPR137CQ8N3F9 429 aa11.19□□□□□ -0.62
VIPAS39-206ENST00000553888 RFT1Q96AA3 541 aa11.19□□□□□ -0.62
VIPAS39-206ENST00000553888 PNPLA2Q96AD5 504 aa11.19□□□□□ -0.62
VIPAS39-206ENST00000553888 SCMH1Q96GD3 660 aa11.19□□□□□ -0.62
VIPAS39-206ENST00000553888 SLC22A4Q9H015 551 aa11.19□□□□□ -0.62
VIPAS39-206ENST00000553888 LDAHQ9H6V9 325 aa11.19□□□□□ -0.62
VIPAS39-206ENST00000553888 RYDENQ9NUL5 291 aaKnown RBP11.19□□□□□ -0.62
VIPAS39-206ENST00000553888 PLEK2Q9NYT0 353 aa11.19□□□□□ -0.62
VIPAS39-206ENST00000553888 STEAP1Q9UHE8 339 aa11.19□□□□□ -0.62
VIPAS39-206ENST00000553888 CACNA1GO43497 2377 aa11.19□□□□□ -0.62
VIPAS39-206ENST00000553888 LYRM1O43325 122 aa11.19□□□□□ -0.62
VIPAS39-206ENST00000553888 KDM4BO94953 1096 aa11.19□□□□□ -0.62
VIPAS39-206ENST00000553888 POU3F4P49335 361 aa11.19□□□□□ -0.62
VIPAS39-206ENST00000553888 ZNF84P51523 738 aa11.19□□□□□ -0.62
VIPAS39-206ENST00000553888 SLC10A1Q14973 349 aa11.19□□□□□ -0.62
VIPAS39-206ENST00000553888 GLYATL3Q5SZD4 288 aa11.19□□□□□ -0.62
VIPAS39-206ENST00000553888 PYHIN1Q6K0P9 492 aa11.19□□□□□ -0.62
VIPAS39-206ENST00000553888 ZNF774Q6NX45 483 aa11.19□□□□□ -0.62
VIPAS39-206ENST00000553888 JAGN1Q8N5M9 183 aa11.19□□□□□ -0.62
VIPAS39-206ENST00000553888 AKR7LQ8NHP1 331 aa11.19□□□□□ -0.62
VIPAS39-206ENST00000553888 YIPF5Q969M3 257 aa11.19□□□□□ -0.62
VIPAS39-206ENST00000553888 C12orf4Q9NQ89 552 aa11.19□□□□□ -0.62
VIPAS39-206ENST00000553888 ZNF275Q9NSD4 429 aaPredicted RBP11.19□□□□□ -0.62
VIPAS39-206ENST00000553888 NLKQ9UBE8 527 aa11.19□□□□□ -0.62
VIPAS39-206ENST00000553888 NUFIP1Q9UHK0 495 aaKnown RBP11.19□□□□□ -0.62
VIPAS39-206ENST00000553888 FOXJ3Q9UPW0 622 aa11.19□□□□□ -0.62
VIPAS39-206ENST00000553888 S100A1P23297 94 aa11.19□□□□□ -0.62
VIPAS39-206ENST00000553888 PTBP1P26599 531 aaKnown RBP eCLIP11.19□□□□□ -0.62
VIPAS39-206ENST00000553888 MAP2K3P46734 347 aa11.19□□□□□ -0.62
VIPAS39-206ENST00000553888 HGFACQ04756 655 aa11.19□□□□□ -0.62
VIPAS39-206ENST00000553888 BCL2A1Q16548 175 aa11.19□□□□□ -0.62
VIPAS39-206ENST00000553888 OR13C9Q8NGT0 318 aa11.19□□□□□ -0.62
VIPAS39-206ENST00000553888 HPS1Q92902 700 aa11.19□□□□□ -0.62
VIPAS39-206ENST00000553888 LYZL4Q96KX0 146 aa11.19□□□□□ -0.62
VIPAS39-206ENST00000553888 GPR35Q9HC97 309 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms