RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, human

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-209	ENST00000542286	FGGY	Q96C11	551 aa		13.15	□□□□□ -0.31
DDX55-209	ENST00000542286	KCNK17	Q96T54	332 aa		13.15	□□□□□ -0.31
DDX55-209	ENST00000542286	MFF	Q9GZY8	342 aa		13.15	□□□□□ -0.31
DDX55-209	ENST00000542286	SERINC1	Q9NRX5	453 aa		13.15	□□□□□ -0.31
DDX55-209	ENST00000542286	WNT16	Q9UBV4	365 aa		13.15	□□□□□ -0.31
DDX55-209	ENST00000542286	IGHV3-15	A0A0B4J1V0	119 aa		13.14	□□□□□ -0.31
DDX55-209	ENST00000542286		A0A1B0GW55	424 aa		13.14	□□□□□ -0.31
DDX55-209	ENST00000542286	OR6C76	A6NM76	312 aa		13.14	□□□□□ -0.31
DDX55-209	ENST00000542286	OR2T1	O43869	369 aa		13.14	□□□□□ -0.31
DDX55-209	ENST00000542286	GLA	P06280	429 aa		13.14	□□□□□ -0.31
DDX55-209	ENST00000542286	DUX4L2	P0CJ85	424 aa		13.14	□□□□□ -0.31
DDX55-209	ENST00000542286	DUX4L3	P0CJ86	424 aa		13.14	□□□□□ -0.31
DDX55-209	ENST00000542286	DUX4L4	P0CJ87	422 aa		13.14	□□□□□ -0.31
DDX55-209	ENST00000542286	DUX4L5	P0CJ88	424 aa		13.14	□□□□□ -0.31
DDX55-209	ENST00000542286	DUX4L6	P0CJ89	424 aa		13.14	□□□□□ -0.31
DDX55-209	ENST00000542286	DUX4L7	P0CJ90	424 aa		13.14	□□□□□ -0.31
DDX55-209	ENST00000542286	GNAL	P38405	381 aa		13.14	□□□□□ -0.31
DDX55-209	ENST00000542286	DNASE1L1	P49184	302 aa		13.14	□□□□□ -0.31
DDX55-209	ENST00000542286	GMFB	P60983	142 aa		13.14	□□□□□ -0.31
DDX55-209	ENST00000542286	LPAL2	Q16609	132 aa		13.14	□□□□□ -0.31
DDX55-209	ENST00000542286	LYSMD4	Q5XG99	296 aa		13.14	□□□□□ -0.31
DDX55-209	ENST00000542286	TMEM17	Q86X19	198 aa		13.14	□□□□□ -0.31
DDX55-209	ENST00000542286	OR10S1	Q8NGN2	331 aa		13.14	□□□□□ -0.31
DDX55-209	ENST00000542286	TMEM234	Q8WY98	164 aa		13.14	□□□□□ -0.31
DDX55-209	ENST00000542286	SLC25A28	Q96A46	364 aa		13.14	□□□□□ -0.31
DDX55-209	ENST00000542286	TINAGL1	Q9GZM7	467 aa	Predicted RBP	13.14	□□□□□ -0.31
DDX55-209	ENST00000542286	CHST11	Q9NPF2	352 aa		13.14	□□□□□ -0.31
DDX55-209	ENST00000542286	KLHL13	Q9P2N7	655 aa		13.14	□□□□□ -0.31
DDX55-209	ENST00000542286	DUX4	Q9UBX2	424 aa		13.14	□□□□□ -0.31
DDX55-209	ENST00000542286	SLC5A6	Q9Y289	635 aa		13.14	□□□□□ -0.31
DDX55-209	ENST00000542286	UBE2QL1	A1L167	161 aa		13.14	□□□□□ -0.31
DDX55-209	ENST00000542286	C5orf63	A6NC05	138 aa		13.14	□□□□□ -0.31
DDX55-209	ENST00000542286	TMEM235	A6NFC5	223 aa		13.14	□□□□□ -0.31
DDX55-209	ENST00000542286		H7C417	338 aa		13.14	□□□□□ -0.31
DDX55-209	ENST00000542286	SLC17A2	O00624	439 aa		13.14	□□□□□ -0.31
DDX55-209	ENST00000542286	CCL4	P13236	92 aa		13.14	□□□□□ -0.31
DDX55-209	ENST00000542286	HTR2C	P28335	458 aa		13.14	□□□□□ -0.31
DDX55-209	ENST00000542286	ROM1	Q03395	351 aa		13.14	□□□□□ -0.31
DDX55-209	ENST00000542286	RAB11FIP2	Q7L804	512 aa		13.14	□□□□□ -0.31
DDX55-209	ENST00000542286	CPEB2	Q7Z5Q1	589 aa	Known RBP	13.14	□□□□□ -0.31
DDX55-209	ENST00000542286	GALNT16	Q8N428	558 aa		13.14	□□□□□ -0.31
DDX55-209	ENST00000542286	STK35	Q8TDR2	534 aa		13.14	□□□□□ -0.31
DDX55-209	ENST00000542286	PRMT8	Q9NR22	394 aa	Predicted RBP	13.14	□□□□□ -0.31
DDX55-209	ENST00000542286	MYOT	Q9UBF9	498 aa		13.14	□□□□□ -0.31
DDX55-209	ENST00000542286	MTFP1	Q9UDX5	166 aa		13.14	□□□□□ -0.31
DDX55-209	ENST00000542286	FARSA	Q9Y285	508 aa	Known RBP	13.14	□□□□□ -0.31
DDX55-209	ENST00000542286	ETV7	Q9Y603	341 aa		13.14	□□□□□ -0.31
DDX55-209	ENST00000542286	WIPF3	A6NGB9	483 aa		13.13	□□□□□ -0.31
DDX55-209	ENST00000542286	LIPT2	A6NK58	231 aa		13.13	□□□□□ -0.31
DDX55-209	ENST00000542286	VSTM2B	A6NLU5	285 aa		13.13	□□□□□ -0.31
DDX55-209	ENST00000542286		F5H5P2	479 aa		13.13	□□□□□ -0.31
DDX55-209	ENST00000542286	SRSF10	O75494	262 aa	Known RBP	13.13	□□□□□ -0.31
DDX55-209	ENST00000542286	NDUFB6	O95139	128 aa		13.13	□□□□□ -0.31
DDX55-209	ENST00000542286	MPG	P29372	298 aa		13.13	□□□□□ -0.31
DDX55-209	ENST00000542286	NKPD1	Q17RQ9	610 aa		13.13	□□□□□ -0.31
DDX55-209	ENST00000542286	DCAF12L2	Q5VW00	463 aa		13.13	□□□□□ -0.31
DDX55-209	ENST00000542286	BOLL	Q8N9W6	283 aa	Known RBP	13.13	□□□□□ -0.31
DDX55-209	ENST00000542286	BIN3	Q9NQY0	253 aa		13.13	□□□□□ -0.31
DDX55-209	ENST00000542286	SRPK3	Q9UPE1	567 aa		13.13	□□□□□ -0.31
DDX55-209	ENST00000542286	LOC100289279	A0A1B0GTE1	492 aa		13.13	□□□□□ -0.31
DDX55-209	ENST00000542286	PQLC2L	A1A4F0	135 aa		13.13	□□□□□ -0.31
DDX55-209	ENST00000542286	GPR31	O00270	319 aa		13.13	□□□□□ -0.31
DDX55-209	ENST00000542286	GOSR2	O14653	212 aa		13.13	□□□□□ -0.31
DDX55-209	ENST00000542286	H2BFM	P0C1H6	154 aa		13.13	□□□□□ -0.31
DDX55-209	ENST00000542286	ACHE	P22303	614 aa		13.13	□□□□□ -0.31
DDX55-209	ENST00000542286	CRABP1	P29762	137 aa		13.13	□□□□□ -0.31
DDX55-209	ENST00000542286	ZNF41	P51814	821 aa	Predicted RBP	13.13	□□□□□ -0.31
DDX55-209	ENST00000542286	HAGHL	Q6PII5	290 aa	Predicted RBP	13.13	□□□□□ -0.31
DDX55-209	ENST00000542286	TMED4	Q7Z7H5	227 aa		13.13	□□□□□ -0.31
DDX55-209	ENST00000542286	HIST2H2AB	Q8IUE6	130 aa	Predicted RBP	13.13	□□□□□ -0.31
DDX55-209	ENST00000542286	OR52N4	Q8NGI2	321 aa		13.13	□□□□□ -0.31
DDX55-209	ENST00000542286	SAP25	Q8TEE9	199 aa		13.13	□□□□□ -0.31
DDX55-209	ENST00000542286	ASB17	Q8WXJ9	295 aa		13.13	□□□□□ -0.31
DDX55-209	ENST00000542286	ADAT3	Q96EY9	351 aa	Predicted RBP	13.13	□□□□□ -0.31
DDX55-209	ENST00000542286	SHD	Q96IW2	340 aa		13.13	□□□□□ -0.31
DDX55-209	ENST00000542286	CMTM3	Q96MX0	182 aa		13.13	□□□□□ -0.31
DDX55-209	ENST00000542286	UTP23	Q9BRU9	249 aa	Known RBP	13.13	□□□□□ -0.31
DDX55-209	ENST00000542286	TGIF2	Q9GZN2	237 aa		13.13	□□□□□ -0.31
DDX55-209	ENST00000542286	PCED1A	Q9H1Q7	454 aa		13.13	□□□□□ -0.31
DDX55-209	ENST00000542286		R4GMQ9	66 aa		13.13	□□□□□ -0.31
DDX55-209	ENST00000542286	BDP1	A6H8Y1	2624 aa		13.13	□□□□□ -0.31
DDX55-209	ENST00000542286	CFAP47	Q6ZTR5	3102 aa		13.12	□□□□□ -0.31
DDX55-209	ENST00000542286	IGLV3-12	A0A075B6K2	115 aa		13.12	□□□□□ -0.31
DDX55-209	ENST00000542286	LINC00587	B1AMM8	73 aa		13.12	□□□□□ -0.31
DDX55-209	ENST00000542286	PHYH	O14832	338 aa		13.12	□□□□□ -0.31
DDX55-209	ENST00000542286	ATG12	O94817	140 aa		13.12	□□□□□ -0.31
DDX55-209	ENST00000542286	KNTC1	P50748	2209 aa		13.12	□□□□□ -0.31
DDX55-209	ENST00000542286	PLPPR5	Q32ZL2	321 aa		13.12	□□□□□ -0.31
DDX55-209	ENST00000542286	TMEM176B	Q3YBM2	270 aa	Predicted RBP	13.12	□□□□□ -0.31
DDX55-209	ENST00000542286	FAM209B	Q5JX69	171 aa		13.12	□□□□□ -0.31
DDX55-209	ENST00000542286	OLFML2A	Q68BL7	652 aa		13.12	□□□□□ -0.31
DDX55-209	ENST00000542286	SLAMF6	Q96DU3	332 aa		13.12	□□□□□ -0.31
DDX55-209	ENST00000542286	RASL10B	Q96S79	203 aa		13.12	□□□□□ -0.31
DDX55-209	ENST00000542286	GAREM1	Q9H706	876 aa		13.12	□□□□□ -0.31
DDX55-209	ENST00000542286	BARX1	Q9HBU1	254 aa	Predicted RBP	13.12	□□□□□ -0.31
DDX55-209	ENST00000542286	FBXO4	Q9UKT5	387 aa		13.12	□□□□□ -0.31
DDX55-209	ENST00000542286	DISC1	C4P0D8	188 aa		13.12	□□□□□ -0.31
DDX55-209	ENST00000542286	ZNF432	O94892	652 aa		13.12	□□□□□ -0.31
DDX55-209	ENST00000542286	PRSS3	P35030	304 aa		13.12	□□□□□ -0.31
DDX55-209	ENST00000542286	SORD	Q00796	357 aa		13.12	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms