RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	EXOSC5	Q9NQT4	235 aa	Known RBP eCLIP	10.38	□□□□□ -0.75
CAPN1-223	ENST00000533079	NDRG4	Q9ULP0	352 aa	Known RBP	10.38	□□□□□ -0.75
CAPN1-223	ENST00000533079	ENPP4	Q9Y6X5	453 aa		10.38	□□□□□ -0.75
CAPN1-223	ENST00000533079	ARHGAP32	A7KAX9	2087 aa		10.38	□□□□□ -0.75
CAPN1-223	ENST00000533079	NBEAL2	Q6ZNJ1	2754 aa		10.37	□□□□□ -0.75
CAPN1-223	ENST00000533079	PHYH	O14832	338 aa		10.37	□□□□□ -0.75
CAPN1-223	ENST00000533079	ENSA	O43768	121 aa	Known RBP	10.37	□□□□□ -0.75
CAPN1-223	ENST00000533079	TPST2	O60704	377 aa		10.37	□□□□□ -0.75
CAPN1-223	ENST00000533079	E2F6	O75461	281 aa		10.37	□□□□□ -0.75
CAPN1-223	ENST00000533079	CH25H	O95992	272 aa		10.37	□□□□□ -0.75
CAPN1-223	ENST00000533079	LYN	P07948	512 aa		10.37	□□□□□ -0.75
CAPN1-223	ENST00000533079	THRB	P10828	461 aa		10.37	□□□□□ -0.75
CAPN1-223	ENST00000533079	AQP1	P29972	269 aa		10.37	□□□□□ -0.75
CAPN1-223	ENST00000533079	CAPG	P40121	348 aa		10.37	□□□□□ -0.75
CAPN1-223	ENST00000533079	RAD23A	P54725	363 aa		10.37	□□□□□ -0.75
CAPN1-223	ENST00000533079	PCBD1	P61457	104 aa		10.37	□□□□□ -0.75
CAPN1-223	ENST00000533079	DUSP7	Q16829	419 aa		10.37	□□□□□ -0.75
CAPN1-223	ENST00000533079	ZNF181	Q2M3W8	571 aa		10.37	□□□□□ -0.75
CAPN1-223	ENST00000533079	FAM27B	Q5VT28	67 aa		10.37	□□□□□ -0.75
CAPN1-223	ENST00000533079	TTC23	Q5W5X9	447 aa		10.37	□□□□□ -0.75
CAPN1-223	ENST00000533079	SLC27A4	Q6P1M0	643 aa		10.37	□□□□□ -0.75
CAPN1-223	ENST00000533079		Q6ZPA2	131 aa		10.37	□□□□□ -0.75
CAPN1-223	ENST00000533079	AKR7L	Q8NHP1	331 aa		10.37	□□□□□ -0.75
CAPN1-223	ENST00000533079	FNDC8	Q8TC99	324 aa		10.37	□□□□□ -0.75
CAPN1-223	ENST00000533079	ITLN1	Q8WWA0	313 aa		10.37	□□□□□ -0.75
CAPN1-223	ENST00000533079	MPP4	Q96JB8	637 aa		10.37	□□□□□ -0.75
CAPN1-223	ENST00000533079	C4orf45	Q96LM5	186 aa		10.37	□□□□□ -0.75
CAPN1-223	ENST00000533079	OR2V2	Q96R30	315 aa		10.37	□□□□□ -0.75
CAPN1-223	ENST00000533079	ZNF426	Q9BUY5	554 aa		10.37	□□□□□ -0.75
CAPN1-223	ENST00000533079	OR2H1	Q9GZK4	316 aa		10.37	□□□□□ -0.75
CAPN1-223	ENST00000533079	GCM1	Q9NP62	436 aa		10.37	□□□□□ -0.75
CAPN1-223	ENST00000533079	TNFRSF19	Q9NS68	423 aa		10.37	□□□□□ -0.75
CAPN1-223	ENST00000533079	UGT2A1	Q9Y4X1	527 aa		10.37	□□□□□ -0.75
CAPN1-223	ENST00000533079	ARRDC5	A6NEK1	342 aa		10.36	□□□□□ -0.75
CAPN1-223	ENST00000533079	LRRC30	A6NM36	301 aa		10.36	□□□□□ -0.75
CAPN1-223	ENST00000533079	P2RY10	O00398	339 aa		10.36	□□□□□ -0.75
CAPN1-223	ENST00000533079	SLC16A6	O15403	523 aa		10.36	□□□□□ -0.75
CAPN1-223	ENST00000533079	GPR137B	O60478	399 aa		10.36	□□□□□ -0.75
CAPN1-223	ENST00000533079	TRMU	O75648	421 aa	Known RBP	10.36	□□□□□ -0.75
CAPN1-223	ENST00000533079	ABHD16A	O95870	558 aa		10.36	□□□□□ -0.75
CAPN1-223	ENST00000533079	IFNW1	P05000	195 aa		10.36	□□□□□ -0.75
CAPN1-223	ENST00000533079	CST2	P09228	141 aa		10.36	□□□□□ -0.75
CAPN1-223	ENST00000533079	CSF1	P09603	554 aa		10.36	□□□□□ -0.75
CAPN1-223	ENST00000533079	COX5B	P10606	129 aa		10.36	□□□□□ -0.75
CAPN1-223	ENST00000533079	PITPNB	P48739	271 aa		10.36	□□□□□ -0.75
CAPN1-223	ENST00000533079	SMIM11A	P58511	58 aa		10.36	□□□□□ -0.75
CAPN1-223	ENST00000533079	FGF12	P61328	243 aa		10.36	□□□□□ -0.75
CAPN1-223	ENST00000533079	ERVK-25	P63136	954 aa		10.36	□□□□□ -0.75
CAPN1-223	ENST00000533079	IL18R1	Q13478	541 aa		10.36	□□□□□ -0.75
CAPN1-223	ENST00000533079	ZNF404	Q494X3	552 aa		10.36	□□□□□ -0.75
CAPN1-223	ENST00000533079	KDM4D	Q6B0I6	523 aa		10.36	□□□□□ -0.75
CAPN1-223	ENST00000533079	FAHD1	Q6P587	224 aa		10.36	□□□□□ -0.75
CAPN1-223	ENST00000533079	GDPGP1	Q6ZNW5	385 aa		10.36	□□□□□ -0.75
CAPN1-223	ENST00000533079		Q6ZR03	302 aa		10.36	□□□□□ -0.75
CAPN1-223	ENST00000533079	LDLRAD3	Q86YD5	345 aa		10.36	□□□□□ -0.75
CAPN1-223	ENST00000533079	C1orf87	Q8N0U7	546 aa		10.36	□□□□□ -0.75
CAPN1-223	ENST00000533079	FAM110D	Q8TAY7	271 aa	Predicted RBP	10.36	□□□□□ -0.75
CAPN1-223	ENST00000533079	GATAD2B	Q8WXI9	593 aa		10.36	□□□□□ -0.75
CAPN1-223	ENST00000533079	DHRS1	Q96LJ7	313 aa		10.36	□□□□□ -0.75
CAPN1-223	ENST00000533079	MCHR1	Q99705	422 aa		10.36	□□□□□ -0.75
CAPN1-223	ENST00000533079	WAC	Q9BTA9	647 aa		10.36	□□□□□ -0.75
CAPN1-223	ENST00000533079	WNT5B	Q9H1J7	359 aa		10.36	□□□□□ -0.75
CAPN1-223	ENST00000533079	C16orf95	Q9H693	158 aa		10.36	□□□□□ -0.75
CAPN1-223	ENST00000533079	TBCCD1	Q9NVR7	557 aa		10.36	□□□□□ -0.75
CAPN1-223	ENST00000533079	CLN8	Q9UBY8	286 aa		10.36	□□□□□ -0.75
CAPN1-223	ENST00000533079	SCOC	Q9UIL1	159 aa		10.36	□□□□□ -0.75
CAPN1-223	ENST00000533079	SAMHD1	Q9Y3Z3	626 aa	Known RBP	10.36	□□□□□ -0.75
CAPN1-223	ENST00000533079	FAM32A	Q9Y421	112 aa	Known RBP	10.36	□□□□□ -0.75
CAPN1-223	ENST00000533079	TIMM10B	Q9Y5J6	103 aa		10.36	□□□□□ -0.75
CAPN1-223	ENST00000533079	RYR3	Q15413	4870 aa		10.35	□□□□□ -0.75
CAPN1-223	ENST00000533079		E9PQ18	207 aa		10.35	□□□□□ -0.75
CAPN1-223	ENST00000533079		J3QW42	95 aa		10.35	□□□□□ -0.75
CAPN1-223	ENST00000533079	TNFAIP8	O95379	198 aa		10.35	□□□□□ -0.75
CAPN1-223	ENST00000533079	SLC2A10	O95528	541 aa		10.35	□□□□□ -0.75
CAPN1-223	ENST00000533079	IGF2	P01344	180 aa		10.35	□□□□□ -0.75
CAPN1-223	ENST00000533079	LIPF	P07098	398 aa		10.35	□□□□□ -0.75
CAPN1-223	ENST00000533079	ANXA8	P13928	327 aa		10.35	□□□□□ -0.75
CAPN1-223	ENST00000533079	CDA	P32320	146 aa		10.35	□□□□□ -0.75
CAPN1-223	ENST00000533079	NPY4R	P50391	375 aa		10.35	□□□□□ -0.75
CAPN1-223	ENST00000533079	UGT2B15	P54855	530 aa		10.35	□□□□□ -0.75
CAPN1-223	ENST00000533079	HNRNPA0	Q13151	305 aa	Known RBP	10.35	□□□□□ -0.75
CAPN1-223	ENST00000533079	ENTPD8	Q5MY95	495 aa		10.35	□□□□□ -0.75
CAPN1-223	ENST00000533079	SAMD5	Q5TGI4	173 aa		10.35	□□□□□ -0.75
CAPN1-223	ENST00000533079	DCDC5	Q6ZRR9	648 aa		10.35	□□□□□ -0.75
CAPN1-223	ENST00000533079	VASH1	Q7L8A9	365 aa	Predicted RBP	10.35	□□□□□ -0.75
CAPN1-223	ENST00000533079	TMEM179B	Q7Z7N9	219 aa		10.35	□□□□□ -0.75
CAPN1-223	ENST00000533079	SYT9	Q86SS6	491 aa		10.35	□□□□□ -0.75
CAPN1-223	ENST00000533079	GPR32P1	Q8NGA4	272 aa		10.35	□□□□□ -0.75
CAPN1-223	ENST00000533079	OR4C15	Q8NGM1	316 aa		10.35	□□□□□ -0.75
CAPN1-223	ENST00000533079	ADAMTS16	Q8TE57	1224 aa		10.35	□□□□□ -0.75
CAPN1-223	ENST00000533079	NMD3	Q96D46	503 aa	Known RBP	10.35	□□□□□ -0.75
CAPN1-223	ENST00000533079	TMEM246	Q9BRR3	403 aa		10.35	□□□□□ -0.75
CAPN1-223	ENST00000533079	TMEM165	Q9HC07	324 aa		10.35	□□□□□ -0.75
CAPN1-223	ENST00000533079	ACOXL	Q9NUZ1	547 aa		10.35	□□□□□ -0.75
CAPN1-223	ENST00000533079	VNN3	Q9NY84	501 aa		10.35	□□□□□ -0.75
CAPN1-223	ENST00000533079	ORC6	Q9Y5N6	252 aa		10.35	□□□□□ -0.75
CAPN1-223	ENST00000533079	LYVE1	Q9Y5Y7	322 aa		10.35	□□□□□ -0.75
CAPN1-223	ENST00000533079	HSPE1-MOB4	S4R3N1	261 aa		10.35	□□□□□ -0.75
CAPN1-223	ENST00000533079	TRAPPC13	A5PLN9	417 aa		10.34	□□□□□ -0.75
CAPN1-223	ENST00000533079		A6NHS1	94 aa		10.34	□□□□□ -0.75

Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms