RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 VPS13CQ709C8 3753 aa12.41□□□□□ -0.42
CPSF1-206ENST00000531480 EFCAB10A6NFE3 127 aa12.4□□□□□ -0.42
CPSF1-206ENST00000531480 F5H5K5 113 aa12.4□□□□□ -0.42
CPSF1-206ENST00000531480 PHYHO14832 338 aa12.4□□□□□ -0.42
CPSF1-206ENST00000531480 CLIC3O95833 236 aa12.4□□□□□ -0.42
CPSF1-206ENST00000531480 LCKP06239 509 aa12.4□□□□□ -0.42
CPSF1-206ENST00000531480 MRPL3P09001 348 aaKnown RBP12.4□□□□□ -0.42
CPSF1-206ENST00000531480 GNAO1P09471 354 aa12.4□□□□□ -0.42
CPSF1-206ENST00000531480 OR2T7P0C7T2 308 aa12.4□□□□□ -0.42
CPSF1-206ENST00000531480 PPOXP50336 477 aa12.4□□□□□ -0.42
CPSF1-206ENST00000531480 HCCSP53701 268 aa12.4□□□□□ -0.42
CPSF1-206ENST00000531480 CDK5R2Q13319 367 aa12.4□□□□□ -0.42
CPSF1-206ENST00000531480 TESK1Q15569 626 aa12.4□□□□□ -0.42
CPSF1-206ENST00000531480 ZNF718Q3SXZ3 478 aa12.4□□□□□ -0.42
CPSF1-206ENST00000531480 KLHL22Q53GT1 634 aa12.4□□□□□ -0.42
CPSF1-206ENST00000531480 ZNF684Q5T5D7 378 aa12.4□□□□□ -0.42
CPSF1-206ENST00000531480 KCTD18Q6PI47 426 aaPredicted RBP12.4□□□□□ -0.42
CPSF1-206ENST00000531480 VHLLQ6RSH7 139 aa12.4□□□□□ -0.42
CPSF1-206ENST00000531480 NAA40Q86UY6 237 aa12.4□□□□□ -0.42
CPSF1-206ENST00000531480 LRP11Q86VZ4 500 aa12.4□□□□□ -0.42
CPSF1-206ENST00000531480 SLC35F2Q8IXU6 374 aa12.4□□□□□ -0.42
CPSF1-206ENST00000531480 OR51G2Q8NGK0 314 aa12.4□□□□□ -0.42
CPSF1-206ENST00000531480 OR2T27Q8NH04 317 aa12.4□□□□□ -0.42
CPSF1-206ENST00000531480 SLC25A40Q8TBP6 338 aa12.4□□□□□ -0.42
CPSF1-206ENST00000531480 KLF14Q8TD94 323 aaPredicted RBP12.4□□□□□ -0.42
CPSF1-206ENST00000531480 OR8B4Q96RC9 309 aa12.4□□□□□ -0.42
CPSF1-206ENST00000531480 COPS4Q9BT78 406 aa12.4□□□□□ -0.42
CPSF1-206ENST00000531480 OR2J1Q9GZK6 312 aa12.4□□□□□ -0.42
CPSF1-206ENST00000531480 POFUT1Q9H488 388 aa12.4□□□□□ -0.42
CPSF1-206ENST00000531480 ZNF696Q9H7X3 374 aa12.4□□□□□ -0.42
CPSF1-206ENST00000531480 NIPAL2Q9H841 368 aa12.4□□□□□ -0.42
CPSF1-206ENST00000531480 CENPMQ9NSP4 180 aa12.4□□□□□ -0.42
CPSF1-206ENST00000531480 MYEF2Q9P2K5 600 aaKnown RBP12.4□□□□□ -0.42
CPSF1-206ENST00000531480 AASSQ9UDR5 926 aa12.4□□□□□ -0.42
CPSF1-206ENST00000531480 PCDHGB1Q9Y5G3 927 aa12.4□□□□□ -0.42
CPSF1-206ENST00000531480 ZNF254O75437 659 aa12.39□□□□□ -0.43
CPSF1-206ENST00000531480 APOC1P02654 83 aa12.39□□□□□ -0.43
CPSF1-206ENST00000531480 DBTP11182 482 aaKnown RBP12.39□□□□□ -0.43
CPSF1-206ENST00000531480 KITLGP21583 273 aa12.39□□□□□ -0.43
CPSF1-206ENST00000531480 ANOS1P23352 680 aa12.39□□□□□ -0.43
CPSF1-206ENST00000531480 KLF3P57682 345 aaPredicted RBP12.39□□□□□ -0.43
CPSF1-206ENST00000531480 ZNF91Q05481 1191 aa12.39□□□□□ -0.43
CPSF1-206ENST00000531480 EGR3Q06889 387 aa12.39□□□□□ -0.43
CPSF1-206ENST00000531480 ZNF679Q8IYX0 411 aa12.39□□□□□ -0.43
CPSF1-206ENST00000531480 SVOPQ8N4V2 548 aa12.39□□□□□ -0.43
CPSF1-206ENST00000531480 RFLNBQ8N5W9 214 aa12.39□□□□□ -0.43
CPSF1-206ENST00000531480 OR5L1Q8NGL2 311 aa12.39□□□□□ -0.43
CPSF1-206ENST00000531480 SYNPRQ8TBG9 265 aa12.39□□□□□ -0.43
CPSF1-206ENST00000531480 THEM6Q8WUY1 208 aa12.39□□□□□ -0.43
CPSF1-206ENST00000531480 MRPL48Q96GC5 212 aaKnown RBP12.39□□□□□ -0.43
CPSF1-206ENST00000531480 CACNG6Q9BXT2 260 aa12.39□□□□□ -0.43
CPSF1-206ENST00000531480 OR51B6Q9H340 312 aa12.39□□□□□ -0.43
CPSF1-206ENST00000531480 PLCXD1Q9NUJ7 323 aa12.39□□□□□ -0.43
CPSF1-206ENST00000531480 CHCHD3Q9NX63 227 aaKnown RBP12.39□□□□□ -0.43
CPSF1-206ENST00000531480 FAM20BO75063 409 aa12.38□□□□□ -0.43
CPSF1-206ENST00000531480 SRSF10O75494 262 aaKnown RBP12.38□□□□□ -0.43
CPSF1-206ENST00000531480 CLPTM1O96005 669 aa12.38□□□□□ -0.43
CPSF1-206ENST00000531480 H2BFMP0C1H6 154 aa12.38□□□□□ -0.43
CPSF1-206ENST00000531480 BMP4P12644 408 aa12.38□□□□□ -0.43
CPSF1-206ENST00000531480 RAC2P15153 192 aa12.38□□□□□ -0.43
CPSF1-206ENST00000531480 MPV17P39210 176 aa12.38□□□□□ -0.43
CPSF1-206ENST00000531480 PTH2RP49190 550 aa12.38□□□□□ -0.43
CPSF1-206ENST00000531480 SNRPD2P62316 118 aaKnown RBP12.38□□□□□ -0.43
CPSF1-206ENST00000531480 RAB40BQ12829 278 aa12.38□□□□□ -0.43
CPSF1-206ENST00000531480 PSG7Q13046 419 aa12.38□□□□□ -0.43
CPSF1-206ENST00000531480 LAIR2Q6ISS4 152 aa12.38□□□□□ -0.43
CPSF1-206ENST00000531480 LRRN1Q6UXK5 716 aa12.38□□□□□ -0.43
CPSF1-206ENST00000531480 SSX6Q7RTT6 188 aa12.38□□□□□ -0.43
CPSF1-206ENST00000531480 KRTAP1-3Q8IUG1 177 aa12.38□□□□□ -0.43
CPSF1-206ENST00000531480 EGFL6Q8IUX8 553 aa12.38□□□□□ -0.43
CPSF1-206ENST00000531480 TSPAN14Q8NG11 270 aa12.38□□□□□ -0.43
CPSF1-206ENST00000531480 SPSB4Q96A44 273 aa12.38□□□□□ -0.43
CPSF1-206ENST00000531480 HAVCR1Q96D42 359 aa12.38□□□□□ -0.43
CPSF1-206ENST00000531480 LGALS12Q96DT0 336 aa12.38□□□□□ -0.43
CPSF1-206ENST00000531480 RNFT2Q96EX2 444 aa12.38□□□□□ -0.43
CPSF1-206ENST00000531480 ZNF649Q9BS31 505 aa12.38□□□□□ -0.43
CPSF1-206ENST00000531480 JAM3Q9BX67 310 aa12.38□□□□□ -0.43
CPSF1-206ENST00000531480 MRPS26Q9BYN8 205 aaKnown RBP12.38□□□□□ -0.43
CPSF1-206ENST00000531480 SLCO1C1Q9NYB5 712 aa12.38□□□□□ -0.43
CPSF1-206ENST00000531480 CNOT2Q9NZN8 540 aaKnown RBP12.38□□□□□ -0.43
CPSF1-206ENST00000531480 LRP12Q9Y561 859 aa12.38□□□□□ -0.43
CPSF1-206ENST00000531480 PMF1-BGLAPU3KQ54 211 aa12.38□□□□□ -0.43
CPSF1-206ENST00000531480 A0A1B0GWJ7 208 aa12.37□□□□□ -0.43
CPSF1-206ENST00000531480 A0A1W2PQL4 384 aaPredicted RBP12.37□□□□□ -0.43
CPSF1-206ENST00000531480 ACOD1A6NK06 481 aa12.37□□□□□ -0.43
CPSF1-206ENST00000531480 ZNF670-ZNF695F2Z2N8 137 aa12.37□□□□□ -0.43
CPSF1-206ENST00000531480 IGHA1P01876 353 aa12.37□□□□□ -0.43
CPSF1-206ENST00000531480 ADH4P08319 380 aa12.37□□□□□ -0.43
CPSF1-206ENST00000531480 ATP6V1E1P36543 226 aa12.37□□□□□ -0.43
CPSF1-206ENST00000531480 CDKN1AP38936 164 aa12.37□□□□□ -0.43
CPSF1-206ENST00000531480 CX3CR1P49238 355 aa12.37□□□□□ -0.43
CPSF1-206ENST00000531480 MMP15P51511 669 aa12.37□□□□□ -0.43
CPSF1-206ENST00000531480 MMP16P51512 607 aa12.37□□□□□ -0.43
CPSF1-206ENST00000531480 PRKXP51817 358 aa12.37□□□□□ -0.43
CPSF1-206ENST00000531480 SELENOVP59797 346 aa12.37□□□□□ -0.43
CPSF1-206ENST00000531480 PSMA6P60900 246 aaKnown RBP12.37□□□□□ -0.43
CPSF1-206ENST00000531480 TAF13Q15543 124 aa12.37□□□□□ -0.43
CPSF1-206ENST00000531480 SMN1Q16637 294 aaKnown RBP12.37□□□□□ -0.43
CPSF1-206ENST00000531480 MOGQ16653 247 aa12.37□□□□□ -0.43
CPSF1-206ENST00000531480 SNAI3Q3KNW1 292 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms