RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 PGBD2Q6P3X8 592 aa11.42□□□□□ -0.58
COL6A3-211ENST00000491233 C1orf87Q8N0U7 546 aa11.42□□□□□ -0.58
COL6A3-211ENST00000491233 PARP8Q8N3A8 854 aa11.42□□□□□ -0.58
COL6A3-211ENST00000491233 GNPDA2Q8TDQ7 276 aa11.42□□□□□ -0.58
COL6A3-211ENST00000491233 NEIL1Q96FI4 390 aaPredicted RBP11.42□□□□□ -0.58
COL6A3-211ENST00000491233 C1orf147Q96MC9 270 aaPredicted RBP11.42□□□□□ -0.58
COL6A3-211ENST00000491233 ZNF48Q96MX3 618 aaPredicted RBP11.42□□□□□ -0.58
COL6A3-211ENST00000491233 TMEM246Q9BRR3 403 aa11.42□□□□□ -0.58
COL6A3-211ENST00000491233 CDADC1Q9BWV3 514 aa11.42□□□□□ -0.58
COL6A3-211ENST00000491233 TMEM100Q9NV29 134 aa11.42□□□□□ -0.58
COL6A3-211ENST00000491233 CYB5R1Q9UHQ9 305 aa11.42□□□□□ -0.58
COL6A3-211ENST00000491233 TMCC3Q9ULS5 477 aa11.42□□□□□ -0.58
COL6A3-211ENST00000491233 TRAV40A0A0B4J280 105 aa11.41□□□□□ -0.58
COL6A3-211ENST00000491233 IGHV2-70DA0A0C4DH43 119 aa11.41□□□□□ -0.58
COL6A3-211ENST00000491233 A0A1B0GWJ7 208 aa11.41□□□□□ -0.58
COL6A3-211ENST00000491233 IDH3BO43837 385 aa11.41□□□□□ -0.58
COL6A3-211ENST00000491233 IGHV4-38-2P0DP08 117 aa11.41□□□□□ -0.58
COL6A3-211ENST00000491233 HKR1P10072 659 aa11.41□□□□□ -0.58
COL6A3-211ENST00000491233 IRF2P14316 349 aa11.41□□□□□ -0.58
COL6A3-211ENST00000491233 EGR1P18146 543 aa11.41□□□□□ -0.58
COL6A3-211ENST00000491233 PRTN3P24158 256 aa11.41□□□□□ -0.58
COL6A3-211ENST00000491233 PYCR1P32322 319 aa11.41□□□□□ -0.58
COL6A3-211ENST00000491233 CD80P33681 288 aa11.41□□□□□ -0.58
COL6A3-211ENST00000491233 PMELP40967 661 aa11.41□□□□□ -0.58
COL6A3-211ENST00000491233 RPS27P42677 84 aaKnown RBP11.41□□□□□ -0.58
COL6A3-211ENST00000491233 GATA4P43694 442 aa11.41□□□□□ -0.58
COL6A3-211ENST00000491233 PAX2Q02962 417 aa11.41□□□□□ -0.58
COL6A3-211ENST00000491233 TSPAN31Q12999 210 aa11.41□□□□□ -0.58
COL6A3-211ENST00000491233 MALLQ13021 153 aa11.41□□□□□ -0.58
COL6A3-211ENST00000491233 CLEC12AQ5QGZ9 265 aa11.41□□□□□ -0.58
COL6A3-211ENST00000491233 PRAMEF6Q5VXH4 476 aa11.41□□□□□ -0.58
COL6A3-211ENST00000491233 BTNL3Q6UXE8 466 aa11.41□□□□□ -0.58
COL6A3-211ENST00000491233 MRPL21Q7Z2W9 205 aaKnown RBP11.41□□□□□ -0.58
COL6A3-211ENST00000491233 NAA40Q86UY6 237 aa11.41□□□□□ -0.58
COL6A3-211ENST00000491233 ZDHHC21Q8IVQ6 265 aa11.41□□□□□ -0.58
COL6A3-211ENST00000491233 OR8B3Q8NGG8 313 aa11.41□□□□□ -0.58
COL6A3-211ENST00000491233 OR52L1Q8NGH7 329 aa11.41□□□□□ -0.58
COL6A3-211ENST00000491233 SLCO4A1Q96BD0 722 aa11.41□□□□□ -0.58
COL6A3-211ENST00000491233 PLEKHA8Q96JA3 519 aa11.41□□□□□ -0.58
COL6A3-211ENST00000491233 MAP6Q96JE9 813 aa11.41□□□□□ -0.58
COL6A3-211ENST00000491233 OR8B2Q96RD0 313 aa11.41□□□□□ -0.58
COL6A3-211ENST00000491233 MS4A7Q9GZW8 240 aaPredicted RBP11.41□□□□□ -0.58
COL6A3-211ENST00000491233 EGLN3Q9H6Z9 239 aa11.41□□□□□ -0.58
COL6A3-211ENST00000491233 ZMAT3Q9HA38 289 aaKnown RBP11.41□□□□□ -0.58
COL6A3-211ENST00000491233 MIOXQ9UGB7 285 aa11.41□□□□□ -0.58
COL6A3-211ENST00000491233 CD300AQ9UGN4 299 aa11.41□□□□□ -0.58
COL6A3-211ENST00000491233 CDH10Q9Y6N8 788 aa11.41□□□□□ -0.58
COL6A3-211ENST00000491233 M0R135 149 aa11.4□□□□□ -0.58
COL6A3-211ENST00000491233 FAM20BO75063 409 aa11.4□□□□□ -0.58
COL6A3-211ENST00000491233 ZNF823P16415 610 aa11.4□□□□□ -0.58
COL6A3-211ENST00000491233 CPT2P23786 658 aa11.4□□□□□ -0.58
COL6A3-211ENST00000491233 CD200P41217 278 aa11.4□□□□□ -0.58
COL6A3-211ENST00000491233 PITPNBP48739 271 aa11.4□□□□□ -0.58
COL6A3-211ENST00000491233 RAD23AP54725 363 aa11.4□□□□□ -0.58
COL6A3-211ENST00000491233 TPTEP56180 551 aa11.4□□□□□ -0.58
COL6A3-211ENST00000491233 FOXL1Q12952 345 aa11.4□□□□□ -0.58
COL6A3-211ENST00000491233 BAMBIQ13145 260 aa11.4□□□□□ -0.58
COL6A3-211ENST00000491233 MAB21L1Q13394 359 aa11.4□□□□□ -0.58
COL6A3-211ENST00000491233 LRRN1Q6UXK5 716 aa11.4□□□□□ -0.58
COL6A3-211ENST00000491233 PGAP1Q75T13 922 aa11.4□□□□□ -0.58
COL6A3-211ENST00000491233 NLRC3Q7RTR2 1065 aa11.4□□□□□ -0.58
COL6A3-211ENST00000491233 CPLX4Q7Z7G2 160 aa11.4□□□□□ -0.58
COL6A3-211ENST00000491233 CYB561A3Q8NBI2 242 aa11.4□□□□□ -0.58
COL6A3-211ENST00000491233 C19orf18Q8NEA5 215 aa11.4□□□□□ -0.58
COL6A3-211ENST00000491233 PROKR2Q8NFJ6 384 aa11.4□□□□□ -0.58
COL6A3-211ENST00000491233 OR9Q2Q8NGE9 314 aa11.4□□□□□ -0.58
COL6A3-211ENST00000491233 OR10S1Q8NGN2 331 aa11.4□□□□□ -0.58
COL6A3-211ENST00000491233 OR11L1Q8NGX0 322 aa11.4□□□□□ -0.58
COL6A3-211ENST00000491233 SGMS2Q8NHU3 365 aa11.4□□□□□ -0.58
COL6A3-211ENST00000491233 DACT3Q96B18 629 aaPredicted RBP11.4□□□□□ -0.58
COL6A3-211ENST00000491233 UPRTQ96BW1 309 aa11.4□□□□□ -0.58
COL6A3-211ENST00000491233 ZNF799Q96GE5 643 aa11.4□□□□□ -0.58
COL6A3-211ENST00000491233 CDRT15Q96T59 188 aa11.4□□□□□ -0.58
COL6A3-211ENST00000491233 IL1RAPQ9NPH3 570 aa11.4□□□□□ -0.58
COL6A3-211ENST00000491233 ARL8BQ9NVJ2 186 aa11.4□□□□□ -0.58
COL6A3-211ENST00000491233 TAGLN3Q9UI15 199 aa11.4□□□□□ -0.58
COL6A3-211ENST00000491233 KCNG2Q9UJ96 466 aa11.4□□□□□ -0.58
COL6A3-211ENST00000491233 PCDHGB1Q9Y5G3 927 aa11.4□□□□□ -0.58
COL6A3-211ENST00000491233 TVP23AA6NH52 213 aa11.39□□□□□ -0.59
COL6A3-211ENST00000491233 FSTL3O95633 263 aa11.39□□□□□ -0.59
COL6A3-211ENST00000491233 PSKH1P11801 424 aa11.39□□□□□ -0.59
COL6A3-211ENST00000491233 ATP6V1B2P21281 511 aa11.39□□□□□ -0.59
COL6A3-211ENST00000491233 ANOS1P23352 680 aa11.39□□□□□ -0.59
COL6A3-211ENST00000491233 OR8G1Q15617 311 aa11.39□□□□□ -0.59
COL6A3-211ENST00000491233 SNAI3Q3KNW1 292 aa11.39□□□□□ -0.59
COL6A3-211ENST00000491233 RPL13AP3Q6NVV1 102 aa11.39□□□□□ -0.59
COL6A3-211ENST00000491233 LYPD4Q6UWN0 246 aa11.39□□□□□ -0.59
COL6A3-211ENST00000491233 LYPD2Q6UXB3 125 aa11.39□□□□□ -0.59
COL6A3-211ENST00000491233 DCDC5Q6ZRR9 648 aa11.39□□□□□ -0.59
COL6A3-211ENST00000491233 CELF2-AS1Q8N7Q2 184 aa11.39□□□□□ -0.59
COL6A3-211ENST00000491233 OR8D4Q8NGM9 314 aa11.39□□□□□ -0.59
COL6A3-211ENST00000491233 OR2AE1Q8NHA4 323 aa11.39□□□□□ -0.59
COL6A3-211ENST00000491233 Q8TCH9 128 aa11.39□□□□□ -0.59
COL6A3-211ENST00000491233 SPRYD4Q8WW59 207 aaPredicted RBP11.39□□□□□ -0.59
COL6A3-211ENST00000491233 RAB40AQ8WXH6 277 aa11.39□□□□□ -0.59
COL6A3-211ENST00000491233 SPTSSAQ969W0 71 aa11.39□□□□□ -0.59
COL6A3-211ENST00000491233 BTBD10Q9BSF8 475 aa11.39□□□□□ -0.59
COL6A3-211ENST00000491233 ADAT1Q9BUB4 502 aaKnown RBP11.39□□□□□ -0.59
COL6A3-211ENST00000491233 UFSP2Q9NUQ7 469 aa11.39□□□□□ -0.59
COL6A3-211ENST00000491233 CLN8Q9UBY8 286 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms