RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 UBA52P62987 128 aaKnown RBP15.74■□□□□ 0.11
CCDC88B-206ENST00000473405 ZNF181Q2M3W8 571 aa15.74■□□□□ 0.11
CCDC88B-206ENST00000473405 ARMCX4Q5H9R4 360 aa15.74■□□□□ 0.11
CCDC88B-206ENST00000473405 CYB561A3Q8NBI2 242 aa15.74■□□□□ 0.11
CCDC88B-206ENST00000473405 OR9Q2Q8NGE9 314 aa15.74■□□□□ 0.11
CCDC88B-206ENST00000473405 OR8D4Q8NGM9 314 aa15.74■□□□□ 0.11
CCDC88B-206ENST00000473405 OR2AJ1Q8NGZ0 328 aa15.74■□□□□ 0.11
CCDC88B-206ENST00000473405 ZNRF4Q8WWF5 429 aa15.74■□□□□ 0.11
CCDC88B-206ENST00000473405 GCDHQ92947 438 aaPredicted RBP15.74■□□□□ 0.11
CCDC88B-206ENST00000473405 DDOQ99489 341 aa15.74■□□□□ 0.11
CCDC88B-206ENST00000473405 HCAR1Q9BXC0 346 aa15.74■□□□□ 0.11
CCDC88B-206ENST00000473405 ZNF69Q9UC07 566 aa15.74■□□□□ 0.11
CCDC88B-206ENST00000473405 VWFP04275 2813 aa15.74■□□□□ 0.11
CCDC88B-206ENST00000473405 FSTL3O95633 263 aa15.73■□□□□ 0.11
CCDC88B-206ENST00000473405 HLA-DQA2P01906 255 aa15.73■□□□□ 0.11
CCDC88B-206ENST00000473405 RPS2P15880 293 aaKnown RBP15.73■□□□□ 0.11
CCDC88B-206ENST00000473405 FPR2P25090 351 aa15.73■□□□□ 0.11
CCDC88B-206ENST00000473405 PYCR1P32322 319 aa15.73■□□□□ 0.11
CCDC88B-206ENST00000473405 RPS27P42677 84 aaKnown RBP15.73■□□□□ 0.11
CCDC88B-206ENST00000473405 GATA4P43694 442 aa15.73■□□□□ 0.11
CCDC88B-206ENST00000473405 HMGA2P52926 109 aa15.73■□□□□ 0.11
CCDC88B-206ENST00000473405 MAB21L1Q13394 359 aa15.73■□□□□ 0.11
CCDC88B-206ENST00000473405 SPATS1Q496A3 300 aa15.73■□□□□ 0.11
CCDC88B-206ENST00000473405 ZNF362Q5T0B9 420 aaPredicted RBP15.73■□□□□ 0.11
CCDC88B-206ENST00000473405 ZNF770Q6IQ21 691 aaPredicted RBP15.73■□□□□ 0.11
CCDC88B-206ENST00000473405 LYPD4Q6UWN0 246 aa15.73■□□□□ 0.11
CCDC88B-206ENST00000473405 PIGWQ7Z7B1 504 aa15.73■□□□□ 0.11
CCDC88B-206ENST00000473405 KLBQ86Z14 1044 aa15.73■□□□□ 0.11
CCDC88B-206ENST00000473405 SIGLECL1Q8N7X8 197 aa15.73■□□□□ 0.11
CCDC88B-206ENST00000473405 DACT3Q96B18 629 aaPredicted RBP15.73■□□□□ 0.11
CCDC88B-206ENST00000473405 TMEM246Q9BRR3 403 aa15.73■□□□□ 0.11
CCDC88B-206ENST00000473405 CDADC1Q9BWV3 514 aa15.73■□□□□ 0.11
CCDC88B-206ENST00000473405 SSBP3Q9BWW4 388 aaPredicted RBP15.73■□□□□ 0.11
CCDC88B-206ENST00000473405 NTN4Q9HB63 628 aa15.73■□□□□ 0.11
CCDC88B-206ENST00000473405 DDX28Q9NUL7 540 aaKnown RBP15.73■□□□□ 0.11
CCDC88B-206ENST00000473405 TMEM100Q9NV29 134 aa15.73■□□□□ 0.11
CCDC88B-206ENST00000473405 OR5V1Q9UGF6 321 aa15.73■□□□□ 0.11
CCDC88B-206ENST00000473405 KCNG2Q9UJ96 466 aa15.73■□□□□ 0.11
CCDC88B-206ENST00000473405 NUP50Q9UKX7 468 aa15.73■□□□□ 0.11
CCDC88B-206ENST00000473405 ARL2BPQ9Y2Y0 163 aa15.73■□□□□ 0.11
CCDC88B-206ENST00000473405 PPIAL4AQ9Y536 164 aa15.73■□□□□ 0.11
CCDC88B-206ENST00000473405 KRT36O76013 467 aa15.72■□□□□ 0.11
CCDC88B-206ENST00000473405 LCATP04180 440 aa15.72■□□□□ 0.11
CCDC88B-206ENST00000473405 CD80P33681 288 aa15.72■□□□□ 0.11
CCDC88B-206ENST00000473405 MAGEA2P43356 314 aa15.72■□□□□ 0.11
CCDC88B-206ENST00000473405 PAX8Q06710 450 aa15.72■□□□□ 0.11
CCDC88B-206ENST00000473405 ZNF404Q494X3 552 aa15.72■□□□□ 0.11
CCDC88B-206ENST00000473405 FAM201AQ5SY85 155 aa15.72■□□□□ 0.11
CCDC88B-206ENST00000473405 C16orf89Q6UX73 402 aa15.72■□□□□ 0.11
CCDC88B-206ENST00000473405 CYP2R1Q6VVX0 501 aa15.72■□□□□ 0.11
CCDC88B-206ENST00000473405 DOK3Q7L591 496 aa15.72■□□□□ 0.11
CCDC88B-206ENST00000473405 OR52L1Q8NGH7 329 aa15.72■□□□□ 0.11
CCDC88B-206ENST00000473405 OR4C15Q8NGM1 316 aa15.72■□□□□ 0.11
CCDC88B-206ENST00000473405 C1orf147Q96MC9 270 aaPredicted RBP15.72■□□□□ 0.11
CCDC88B-206ENST00000473405 MRI1Q9BV20 369 aa15.72■□□□□ 0.11
CCDC88B-206ENST00000473405 NDE1Q9NXR1 346 aa15.72■□□□□ 0.11
CCDC88B-206ENST00000473405 IL20Q9NYY1 176 aa15.72■□□□□ 0.11
CCDC88B-206ENST00000473405 C5orf63A6NC05 138 aa15.71■□□□□ 0.11
CCDC88B-206ENST00000473405 TVP23AA6NH52 213 aa15.71■□□□□ 0.11
CCDC88B-206ENST00000473405 LRRC30A6NM36 301 aa15.71■□□□□ 0.11
CCDC88B-206ENST00000473405 M0R135 149 aa15.71■□□□□ 0.11
CCDC88B-206ENST00000473405 DCTN3O75935 186 aa15.71■□□□□ 0.11
CCDC88B-206ENST00000473405 CPT2P23786 658 aa15.71■□□□□ 0.11
CCDC88B-206ENST00000473405 OTX1P32242 354 aaPredicted RBP15.71■□□□□ 0.11
CCDC88B-206ENST00000473405 CD200P41217 278 aa15.71■□□□□ 0.11
CCDC88B-206ENST00000473405 RAD23AP54725 363 aa15.71■□□□□ 0.11
CCDC88B-206ENST00000473405 GNGT1P63211 74 aa15.71■□□□□ 0.11
CCDC88B-206ENST00000473405 SNAI3Q3KNW1 292 aa15.71■□□□□ 0.11
CCDC88B-206ENST00000473405 RPL13AP3Q6NVV1 102 aa15.71■□□□□ 0.11
CCDC88B-206ENST00000473405 PGAP1Q75T13 922 aa15.71■□□□□ 0.11
CCDC88B-206ENST00000473405 BCL6BQ8N143 479 aaPredicted RBP15.71■□□□□ 0.11
CCDC88B-206ENST00000473405 CELF2-AS1Q8N7Q2 184 aa15.71■□□□□ 0.11
CCDC88B-206ENST00000473405 PROKR2Q8NFJ6 384 aa15.71■□□□□ 0.11
CCDC88B-206ENST00000473405 Q8TCH9 128 aa15.71■□□□□ 0.11
CCDC88B-206ENST00000473405 SLCO4A1Q96BD0 722 aa15.71■□□□□ 0.11
CCDC88B-206ENST00000473405 ZNF799Q96GE5 643 aa15.71■□□□□ 0.11
CCDC88B-206ENST00000473405 ZNF48Q96MX3 618 aaPredicted RBP15.71■□□□□ 0.11
CCDC88B-206ENST00000473405 TRIM15Q9C019 465 aa15.71■□□□□ 0.11
CCDC88B-206ENST00000473405 ACTR3BQ9P1U1 418 aa15.71■□□□□ 0.11
CCDC88B-206ENST00000473405 COMMD3-BMI1R4GMX3 469 aa15.71■□□□□ 0.11
CCDC88B-206ENST00000473405 TCRBV5S2A0A599 114 aa15.7■□□□□ 0.1
CCDC88B-206ENST00000473405 DNAJC9-AS1A6NH13 148 aa15.7■□□□□ 0.1
CCDC88B-206ENST00000473405 TNFRSF11BO00300 401 aa15.7■□□□□ 0.1
CCDC88B-206ENST00000473405 TPTEP56180 551 aa15.7■□□□□ 0.1
CCDC88B-206ENST00000473405 MXRA7P84157 204 aa15.7■□□□□ 0.1
CCDC88B-206ENST00000473405 HOXA4Q00056 320 aaPredicted RBP15.7■□□□□ 0.1
CCDC88B-206ENST00000473405 MALLQ13021 153 aa15.7■□□□□ 0.1
CCDC88B-206ENST00000473405 AWAT1Q58HT5 328 aa15.7■□□□□ 0.1
CCDC88B-206ENST00000473405 PRAMEF6Q5VXH4 476 aa15.7■□□□□ 0.1
CCDC88B-206ENST00000473405 C1orf87Q8N0U7 546 aa15.7■□□□□ 0.1
CCDC88B-206ENST00000473405 C3orf56Q8N813 242 aa15.7■□□□□ 0.1
CCDC88B-206ENST00000473405 SLC37A3Q8NCC5 494 aa15.7■□□□□ 0.1
CCDC88B-206ENST00000473405 OR51L1Q8NGJ5 315 aa15.7■□□□□ 0.1
CCDC88B-206ENST00000473405 OR9Q1Q8NGQ5 310 aa15.7■□□□□ 0.1
CCDC88B-206ENST00000473405 SPTSSAQ969W0 71 aa15.7■□□□□ 0.1
CCDC88B-206ENST00000473405 NEIL1Q96FI4 390 aaPredicted RBP15.7■□□□□ 0.1
CCDC88B-206ENST00000473405 VNN3Q9NY84 501 aa15.7■□□□□ 0.1
CCDC88B-206ENST00000473405 MIOXQ9UGB7 285 aa15.7■□□□□ 0.1
CCDC88B-206ENST00000473405 IGHV2-70DA0A0C4DH43 119 aa15.69■□□□□ 0.1
CCDC88B-206ENST00000473405 FAM20BO75063 409 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms