RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 JAM3Q9BX67 310 aa12.71□□□□□ -0.37
COL9A3-209ENST00000469852 MROQ9BYG7 248 aa12.71□□□□□ -0.37
COL9A3-209ENST00000469852 OR2J1Q9GZK6 312 aa12.71□□□□□ -0.37
COL9A3-209ENST00000469852 Q9H521 79 aa12.71□□□□□ -0.37
COL9A3-209ENST00000469852 ACOXLQ9NUZ1 547 aa12.71□□□□□ -0.37
COL9A3-209ENST00000469852 TBCCD1Q9NVR7 557 aa12.71□□□□□ -0.37
COL9A3-209ENST00000469852 FAM206AQ9NX38 181 aa12.71□□□□□ -0.37
COL9A3-209ENST00000469852 CNOT2Q9NZN8 540 aaKnown RBP12.71□□□□□ -0.37
COL9A3-209ENST00000469852 MYEF2Q9P2K5 600 aaKnown RBP12.71□□□□□ -0.37
COL9A3-209ENST00000469852 EIF3KQ9UBQ5 218 aaKnown RBP12.71□□□□□ -0.37
COL9A3-209ENST00000469852 CLEC2DQ9UHP7 191 aa12.71□□□□□ -0.37
COL9A3-209ENST00000469852 LRRC42Q9Y546 428 aa12.71□□□□□ -0.37
COL9A3-209ENST00000469852 PCDHGB1Q9Y5G3 927 aa12.71□□□□□ -0.37
COL9A3-209ENST00000469852 METTL15A6NJ78 407 aa12.7□□□□□ -0.38
COL9A3-209ENST00000469852 PTGES3LE9PB15 166 aa12.7□□□□□ -0.38
COL9A3-209ENST00000469852 RPP14O95059 124 aaKnown RBP12.7□□□□□ -0.38
COL9A3-209ENST00000469852 CLPTM1O96005 669 aa12.7□□□□□ -0.38
COL9A3-209ENST00000469852 LCATP04180 440 aa12.7□□□□□ -0.38
COL9A3-209ENST00000469852 ANXA2P07355 339 aaKnown RBP12.7□□□□□ -0.38
COL9A3-209ENST00000469852 SOD3P08294 240 aa12.7□□□□□ -0.38
COL9A3-209ENST00000469852 DANCRP0C864 163 aa12.7□□□□□ -0.38
COL9A3-209ENST00000469852 CRHBPP24387 322 aa12.7□□□□□ -0.38
COL9A3-209ENST00000469852 DCKP27707 260 aa12.7□□□□□ -0.38
COL9A3-209ENST00000469852 GLRXP35754 106 aa12.7□□□□□ -0.38
COL9A3-209ENST00000469852 PSMB10P40306 273 aa12.7□□□□□ -0.38
COL9A3-209ENST00000469852 RAD52P43351 418 aa12.7□□□□□ -0.38
COL9A3-209ENST00000469852 RIDAP52758 137 aaKnown RBP12.7□□□□□ -0.38
COL9A3-209ENST00000469852 PSMA6P60900 246 aaKnown RBP12.7□□□□□ -0.38
COL9A3-209ENST00000469852 SLC35A2P78381 396 aa12.7□□□□□ -0.38
COL9A3-209ENST00000469852 HLXQ14774 488 aaPredicted RBP12.7□□□□□ -0.38
COL9A3-209ENST00000469852 FAM57BQ71RH2 274 aa12.7□□□□□ -0.38
COL9A3-209ENST00000469852 YIPF7Q8N8F6 280 aa12.7□□□□□ -0.38
COL9A3-209ENST00000469852 OR2AE1Q8NHA4 323 aa12.7□□□□□ -0.38
COL9A3-209ENST00000469852 SNX33Q8WV41 574 aa12.7□□□□□ -0.38
COL9A3-209ENST00000469852 C4orf36Q96KX1 117 aa12.7□□□□□ -0.38
COL9A3-209ENST00000469852 MRPL37Q9BZE1 423 aaKnown RBP12.7□□□□□ -0.38
COL9A3-209ENST00000469852 BCL2L14Q9BZR8 327 aa12.7□□□□□ -0.38
COL9A3-209ENST00000469852 ZNF442Q9H7R0 627 aa12.7□□□□□ -0.38
COL9A3-209ENST00000469852 PTTG3PQ9NZH4 202 aa12.7□□□□□ -0.38
COL9A3-209ENST00000469852 ERVK-18Q9QC07 812 aa12.7□□□□□ -0.38
COL9A3-209ENST00000469852 GNG8Q9UK08 70 aa12.7□□□□□ -0.38
COL9A3-209ENST00000469852 SPEF1Q9Y4P9 236 aa12.7□□□□□ -0.38
COL9A3-209ENST00000469852 OTOGQ6ZRI0 2925 aa12.69□□□□□ -0.38
COL9A3-209ENST00000469852 TMEM129A0AVI4 362 aa12.69□□□□□ -0.38
COL9A3-209ENST00000469852 J3QLW9 94 aa12.69□□□□□ -0.38
COL9A3-209ENST00000469852 ZNF254O75437 659 aa12.69□□□□□ -0.38
COL9A3-209ENST00000469852 CD8AP01732 235 aa12.69□□□□□ -0.38
COL9A3-209ENST00000469852 KRT8P05787 483 aa12.69□□□□□ -0.38
COL9A3-209ENST00000469852 CDK1P06493 297 aa12.69□□□□□ -0.38
COL9A3-209ENST00000469852 HTR1AP08908 422 aa12.69□□□□□ -0.38
COL9A3-209ENST00000469852 OR4A8P0C604 315 aa12.69□□□□□ -0.38
COL9A3-209ENST00000469852 CCDC159P0C7I6 412 aa12.69□□□□□ -0.38
COL9A3-209ENST00000469852 ZNF19P17023 458 aa12.69□□□□□ -0.38
COL9A3-209ENST00000469852 RGS6P49758 472 aa12.69□□□□□ -0.38
COL9A3-209ENST00000469852 FABP6P51161 128 aa12.69□□□□□ -0.38
COL9A3-209ENST00000469852 MED21Q13503 144 aa12.69□□□□□ -0.38
COL9A3-209ENST00000469852 MST1LQ2TV78 715 aa12.69□□□□□ -0.38
COL9A3-209ENST00000469852 ALKBH6Q3KRA9 238 aa12.69□□□□□ -0.38
COL9A3-209ENST00000469852 GLYATL3Q5SZD4 288 aa12.69□□□□□ -0.38
COL9A3-209ENST00000469852 OR2G6Q5TZ20 316 aa12.69□□□□□ -0.38
COL9A3-209ENST00000469852 LIPNQ5VXI9 398 aa12.69□□□□□ -0.38
COL9A3-209ENST00000469852 RGS7BPQ6MZT1 257 aaPredicted RBP12.69□□□□□ -0.38
COL9A3-209ENST00000469852 ARL9Q6T311 187 aa12.69□□□□□ -0.38
COL9A3-209ENST00000469852 STX19Q8N4C7 294 aa12.69□□□□□ -0.38
COL9A3-209ENST00000469852 ZNF611Q8N823 705 aa12.69□□□□□ -0.38
COL9A3-209ENST00000469852 OR8B12Q8NGG6 310 aa12.69□□□□□ -0.38
COL9A3-209ENST00000469852 IPCEF1Q8WWN9 437 aaPredicted RBP12.69□□□□□ -0.38
COL9A3-209ENST00000469852 RORBQ92753 470 aa12.69□□□□□ -0.38
COL9A3-209ENST00000469852 APOBEC3DQ96AK3 386 aaPredicted RBP12.69□□□□□ -0.38
COL9A3-209ENST00000469852 PELI1Q96FA3 418 aa12.69□□□□□ -0.38
COL9A3-209ENST00000469852 SIGLEC11Q96RL6 698 aa12.69□□□□□ -0.38
COL9A3-209ENST00000469852 SYT3Q9BQG1 590 aa12.69□□□□□ -0.38
COL9A3-209ENST00000469852 DUSP21Q9H596 190 aa12.69□□□□□ -0.38
COL9A3-209ENST00000469852 INPP5EQ9NRR6 644 aa12.69□□□□□ -0.38
COL9A3-209ENST00000469852 DSCAMO60469 2012 aa12.69□□□□□ -0.38
COL9A3-209ENST00000469852 SPG11Q96JI7 2443 aa12.69□□□□□ -0.38
COL9A3-209ENST00000469852 TMEM269A0A1B0GVZ9 245 aa12.68□□□□□ -0.38
COL9A3-209ENST00000469852 IRGMA1A4Y4 181 aa12.68□□□□□ -0.38
COL9A3-209ENST00000469852 E9PI62 339 aa12.68□□□□□ -0.38
COL9A3-209ENST00000469852 TBX1O43435 398 aa12.68□□□□□ -0.38
COL9A3-209ENST00000469852 SULT1C4O75897 302 aa12.68□□□□□ -0.38
COL9A3-209ENST00000469852 MT-ND2P03891 347 aa12.68□□□□□ -0.38
COL9A3-209ENST00000469852 ZNF250P15622 560 aa12.68□□□□□ -0.38
COL9A3-209ENST00000469852 APOBEC3AP31941 199 aaPredicted RBP12.68□□□□□ -0.38
COL9A3-209ENST00000469852 DCTDP32321 178 aa12.68□□□□□ -0.38
COL9A3-209ENST00000469852 TTKP33981 857 aa12.68□□□□□ -0.38
COL9A3-209ENST00000469852 CSNK2BP67870 215 aa12.68□□□□□ -0.38
COL9A3-209ENST00000469852 RBM48Q5RL73 367 aaKnown RBP12.68□□□□□ -0.38
COL9A3-209ENST00000469852 ZNF544Q6NX49 715 aa12.68□□□□□ -0.38
COL9A3-209ENST00000469852 KLF14Q8TD94 323 aaPredicted RBP12.68□□□□□ -0.38
COL9A3-209ENST00000469852 IGFBPL1Q8WX77 278 aa12.68□□□□□ -0.38
COL9A3-209ENST00000469852 MRPL24Q96A35 216 aaKnown RBP12.68□□□□□ -0.38
COL9A3-209ENST00000469852 SOX7Q9BT81 388 aa12.68□□□□□ -0.38
COL9A3-209ENST00000469852 NIPAL2Q9H841 368 aa12.68□□□□□ -0.38
COL9A3-209ENST00000469852 G6PC2Q9NQR9 355 aa12.68□□□□□ -0.38
COL9A3-209ENST00000469852 SCN3BQ9NY72 215 aa12.68□□□□□ -0.38
COL9A3-209ENST00000469852 EXOSC1Q9Y3B2 195 aaKnown RBP12.68□□□□□ -0.38
COL9A3-209ENST00000469852 CMAHPQ9Y471 501 aa12.68□□□□□ -0.38
COL9A3-209ENST00000469852 R4GMQ9 66 aa12.68□□□□□ -0.38
COL9A3-209ENST00000469852 PDZD2O15018 2839 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms