RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 SLC9A3R2Q15599 337 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 SDHAF4Q5VUM1 108 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 SELENOIQ9C0D9 397 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 UQCR10Q9UDW1 63 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 SH3BGRL2Q9UJC5 107 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 ZNF256Q9Y2P7 627 aaPredicted RBP6.57□□□□□ -1.36
VPS53-204ENST00000437048 TIMM8BQ9Y5J9 83 aaPredicted RBP6.57□□□□□ -1.36
VPS53-204ENST00000437048 ZNF840PA6NDX5 716 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 ZFP92A6NM28 416 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 GALR2O43603 387 aaPredicted RBP6.57□□□□□ -1.36
VPS53-204ENST00000437048 MPDU1O75352 247 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 ALDOCP09972 364 aaKnown RBP6.57□□□□□ -1.36
VPS53-204ENST00000437048 FABP2P12104 132 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 INPP5JQ15735 1006 aaPredicted RBP6.57□□□□□ -1.36
VPS53-204ENST00000437048 SPRED3Q2MJR0 410 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 BOD1Q96IK1 185 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 SGIP1Q9BQI5 828 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 SPHK2Q9NRA0 654 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 CD84Q9UIB8 345 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 CD207Q9UJ71 328 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 KLK8O60259 260 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 GASTP01350 101 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 HOXB2P14652 356 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 TEAD1P28347 426 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 NOVP48745 357 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 OPALINQ96PE5 141 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 UQCC1Q9NVA1 299 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 MARCH5Q9NX47 278 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 HAO2Q9NYQ3 351 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 MTFP1Q9UDX5 166 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 WNK1Q9H4A3 2382 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 PRAMEF26H0Y7S4 382 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 GFRA2O00451 464 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 COX6CP09669 75 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 ARR3P36575 388 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 DUSP8Q13202 625 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 RPEL1Q2QD12 228 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 ARHGAP11BQ3KRB8 267 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 ZNF66Q6ZN08 573 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 CLECL1Q8IZS7 167 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 CTSOP43234 321 aaPredicted RBP6.57□□□□□ -1.36
VPS53-204ENST00000437048 ZFP41Q8N8Y5 198 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 P2RX4Q99571 388 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 SULT1A3P0DMM9 295 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 SULT1A4P0DMN0 295 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 NME1P15531 152 aaKnown RBP6.57□□□□□ -1.36
VPS53-204ENST00000437048 GJA5P36382 358 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 B3GNT9Q6UX72 402 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 NAA50Q9GZZ1 169 aaKnown RBP6.57□□□□□ -1.36
VPS53-204ENST00000437048 TMEM231Q9H6L2 316 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 SFXN1Q9H9B4 322 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 PLPP2O43688 288 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 CRYABP02511 175 aaKnown RBP6.57□□□□□ -1.36
VPS53-204ENST00000437048 OLIG2Q13516 323 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 FBXO27Q8NI29 283 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 LRRC15Q8TF66 581 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 PRRX2Q99811 253 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 MAP1LC3CQ9BXW4 147 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 CALHM2Q9HA72 323 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 TREM2Q9NZC2 230 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 ASB1Q9Y576 335 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 CRYBG1Q9Y4K1 1723 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 PKD1L3Q7Z443 1732 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 IGKV6D-21A0A0A0MT36 114 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 MEIS3P2A8K0S8 358 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 SEMA7AO75326 666 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 SELENBP1Q13228 472 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 FZD2Q14332 565 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 ETFDHQ16134 617 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 OR1L4Q8NGR5 311 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 BRS3P32247 399 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 FIGLAQ6QHK4 219 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 FJX1Q86VR8 437 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 FAM219AQ8IW50 185 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 DMBX1Q8NFW5 382 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 DTD2Q96FN9 168 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 CSF3RQ99062 836 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 ABCA4P78363 2273 aa6.57□□□□□ -1.36
VPS53-204ENST00000437048 PCBP4P57723 403 aaKnown RBP6.56□□□□□ -1.36
VPS53-204ENST00000437048 RUNX2Q13950 521 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 PRRT3Q5FWE3 981 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 LINC00596Q86U02 117 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 BLNKQ8WV28 456 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 ADGRG7Q96K78 797 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 MSLNLQ96KJ4 702 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 RBM38Q9H0Z9 239 aaKnown RBP6.56□□□□□ -1.36
VPS53-204ENST00000437048 OR52A4PA6NMU1 304 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 SLC25A4P12235 298 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 HOXA6P31267 233 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 GJA4P35212 333 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 MRGPRGQ86SM5 289 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 OR1L1Q8NH94 360 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 SDK2Q58EX2 2172 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 SERINC4A6NH21 518 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 TYMSP04818 313 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 TMED6Q8WW62 240 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 ESAMQ96AP7 390 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.56□□□□□ -1.366e-6■■■□□ 18.2
VPS53-204ENST00000437048 A0A1W2PPQ1 181 aa6.56□□□□□ -1.36
VPS53-204ENST00000437048 MGST1P10620 155 aaKnown RBP6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms