RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 CLDN19Q8N6F1 224 aa3.36□□□□□ -1.87
HMGB3-203ENST00000430118 ZNF781Q8N8C0 355 aa3.36□□□□□ -1.87
HMGB3-203ENST00000430118 C4orf32Q8N8J7 132 aa3.36□□□□□ -1.87
HMGB3-203ENST00000430118 RELL2Q8NC24 303 aaPredicted RBP3.36□□□□□ -1.87
HMGB3-203ENST00000430118 ST6GALNAC3Q8NDV1 305 aa3.36□□□□□ -1.87
HMGB3-203ENST00000430118 OR1M1Q8NGA1 313 aa3.36□□□□□ -1.87
HMGB3-203ENST00000430118 OR4D9Q8NGE8 314 aa3.36□□□□□ -1.87
HMGB3-203ENST00000430118 OR6Q1Q8NGQ2 317 aa3.36□□□□□ -1.87
HMGB3-203ENST00000430118 RHOXF1Q8NHV9 184 aa3.36□□□□□ -1.87
HMGB3-203ENST00000430118 ZNF519Q8TB69 540 aa3.36□□□□□ -1.87
HMGB3-203ENST00000430118 WFDC5Q8TCV5 224 aa3.36□□□□□ -1.87
HMGB3-203ENST00000430118 ZDHHC19Q8WVZ1 309 aaPredicted RBP3.36□□□□□ -1.87
HMGB3-203ENST00000430118 ZHX1-C8orf76Q96EF9 292 aa3.36□□□□□ -1.87
HMGB3-203ENST00000430118 MRPL48Q96GC5 212 aaKnown RBP3.36□□□□□ -1.87
HMGB3-203ENST00000430118 BMFQ96LC9 184 aa3.36□□□□□ -1.87
HMGB3-203ENST00000430118 HSFY1Q96LI6 401 aa3.36□□□□□ -1.87
HMGB3-203ENST00000430118 RNF145Q96MT1 663 aa3.36□□□□□ -1.87
HMGB3-203ENST00000430118 PSMB7Q99436 277 aa3.36□□□□□ -1.87
HMGB3-203ENST00000430118 FAM173AQ9BQD7 235 aa3.36□□□□□ -1.87
HMGB3-203ENST00000430118 ST6GALNAC5Q9BVH7 336 aa3.36□□□□□ -1.87
HMGB3-203ENST00000430118 MND1Q9BWT6 205 aa3.36□□□□□ -1.87
HMGB3-203ENST00000430118 ULBP1Q9BZM6 244 aa3.36□□□□□ -1.87
HMGB3-203ENST00000430118 COMMD4Q9H0A8 199 aa3.36□□□□□ -1.87
HMGB3-203ENST00000430118 ILKAPQ9H0C8 392 aaPredicted RBP3.36□□□□□ -1.87
HMGB3-203ENST00000430118 SLC25A51Q9H1U9 297 aa3.36□□□□□ -1.87
HMGB3-203ENST00000430118 SPNS1Q9H2V7 528 aa3.36□□□□□ -1.87
HMGB3-203ENST00000430118 RANBP3Q9H6Z4 567 aaPredicted RBP3.36□□□□□ -1.87
HMGB3-203ENST00000430118 RDH14Q9HBH5 336 aa3.36□□□□□ -1.87
HMGB3-203ENST00000430118 SPACA1Q9HBV2 294 aa3.36□□□□□ -1.87
HMGB3-203ENST00000430118 MYOZ1Q9NP98 299 aaPredicted RBP3.36□□□□□ -1.87
HMGB3-203ENST00000430118 DEPPQ9NTK1 212 aa3.36□□□□□ -1.87
HMGB3-203ENST00000430118 THUMPD1Q9NXG2 353 aaKnown RBP3.36□□□□□ -1.87
HMGB3-203ENST00000430118 BABAM2Q9NXR7 383 aa3.36□□□□□ -1.87
HMGB3-203ENST00000430118 TMEM216Q9P0N5 145 aa3.36□□□□□ -1.87
HMGB3-203ENST00000430118 SEC14L4Q9UDX3 406 aa3.36□□□□□ -1.87
HMGB3-203ENST00000430118 FBXO5Q9UKT4 447 aa3.36□□□□□ -1.87
HMGB3-203ENST00000430118 RARRES3Q9UL19 164 aa3.36□□□□□ -1.87
HMGB3-203ENST00000430118 RNF11Q9Y3C5 154 aa3.36□□□□□ -1.87
HMGB3-203ENST00000430118 NUBP2Q9Y5Y2 271 aa3.36□□□□□ -1.87
HMGB3-203ENST00000430118 SLC22A7Q9Y694 548 aa3.36□□□□□ -1.87
HMGB3-203ENST00000430118 PCNX1Q96RV3 2341 aa3.36□□□□□ -1.87
HMGB3-203ENST00000430118 CENPEQ02224 2701 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 TRBV7-9A0A0J9YWB2 115 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 IGHV5-10-1A0A0J9YXX1 117 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 IGLON5A6NGN9 336 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 C21orf140B9A014 251 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 NPIPA7E9PJI5 369 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 G3V2L1 256 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 H3BMH7 237 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 CDC7O00311 574 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 BTN3A3O00478 584 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 PHYHO14832 338 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 ARPC3O15145 178 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 NUPL2O15504 423 aaKnown RBP3.35□□□□□ -1.87
HMGB3-203ENST00000430118 SGCEO43556 437 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 OR1F1O43749 312 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 LCMT2O60294 686 aaKnown RBP3.35□□□□□ -1.87
HMGB3-203ENST00000430118 UGT2B11O75310 529 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 CLDN11O75508 207 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 ZFAND5O76080 213 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 GABARAPO95166 117 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 NUDT14O95848 222 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 IGLV1-44P01699 117 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 IGLV3-27P01718 113 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 STSP08842 583 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 NPIPA8P0DM63 369 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 ADORA3P0DMS8 318 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 COX4I1P13073 169 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 CCL4P13236 92 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 CD99P14209 185 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 ZNF26P17031 533 aaPredicted RBP3.35□□□□□ -1.87
HMGB3-203ENST00000430118 TPSB2P20231 275 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 UCP1P25874 307 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 PTBP1P26599 531 aaKnown RBP eCLIP3.35□□□□□ -1.87
HMGB3-203ENST00000430118 GRIA1P42261 906 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 HLCSP50747 726 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 RAB25P57735 213 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 RPS24P62847 133 aaKnown RBP3.35□□□□□ -1.87
HMGB3-203ENST00000430118 RPS27AP62979 156 aaKnown RBP3.35□□□□□ -1.87
HMGB3-203ENST00000430118 SRPXP78539 464 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 TNFRSF17Q02223 184 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 ZNF45Q02386 682 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 ART3Q13508 389 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 SMCO1Q147U7 214 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 ATXN7L3Q14CW9 347 aaPredicted RBP3.35□□□□□ -1.87
HMGB3-203ENST00000430118 TRAM2Q15035 370 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 TPSAB1Q15661 275 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 GRK1Q15835 563 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 FAM189A2Q15884 450 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 DGUOKQ16854 277 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 PARP15Q460N3 678 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 RNF212Q495C1 297 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 LINC00242Q5T6M2 205 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 PMF1Q6P1K2 205 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 BHLHB9Q6PI77 547 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 CLEC2AQ6UVW9 174 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 Q6ZRP5 223 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 TSEN54Q7Z6J9 526 aaKnown RBP3.35□□□□□ -1.87
HMGB3-203ENST00000430118 SLC47A2Q86VL8 602 aa3.35□□□□□ -1.87
HMGB3-203ENST00000430118 TMEM17Q86X19 198 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms