RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 POC1BQ8TC44 478 aa8.76□□□□□ -1.01
SS18-203ENST00000415083 SSC4DQ8WTU2 575 aa8.76□□□□□ -1.01
SS18-203ENST00000415083 PTX4Q96A99 478 aa8.76□□□□□ -1.01
SS18-203ENST00000415083 MRPL13Q9BYD1 178 aaKnown RBP8.76□□□□□ -1.01
SS18-203ENST00000415083 TBL1XR1Q9BZK7 514 aa8.76□□□□□ -1.01
SS18-203ENST00000415083 TMEM185BQ9H7F4 350 aa8.76□□□□□ -1.01
SS18-203ENST00000415083 PLA2G2EQ9NZK7 142 aa8.76□□□□□ -1.01
SS18-203ENST00000415083 CYB5R1Q9UHQ9 305 aa8.76□□□□□ -1.01
SS18-203ENST00000415083 LHFPL6Q9Y693 200 aa8.76□□□□□ -1.01
SS18-203ENST00000415083 SPAG17Q6Q759 2223 aa8.75□□□□□ -1.01
SS18-203ENST00000415083 MSGN1A6NI15 193 aa8.75□□□□□ -1.01
SS18-203ENST00000415083 TMEM14DPA8MWL7 114 aa8.75□□□□□ -1.01
SS18-203ENST00000415083 NDUFA2O43678 99 aa8.75□□□□□ -1.01
SS18-203ENST00000415083 OR6A2O95222 327 aa8.75□□□□□ -1.01
SS18-203ENST00000415083 TIAF1O95411 115 aa8.75□□□□□ -1.01
SS18-203ENST00000415083 CD34P28906 385 aa8.75□□□□□ -1.01
SS18-203ENST00000415083 SUPT4H1P63272 117 aaKnown RBP8.75□□□□□ -1.01
SS18-203ENST00000415083 ZP4Q12836 540 aa8.75□□□□□ -1.01
SS18-203ENST00000415083 OR7A5Q15622 319 aa8.75□□□□□ -1.01
SS18-203ENST00000415083 RNF138Q8WVD3 245 aa8.75□□□□□ -1.01
SS18-203ENST00000415083 ZBTB8AQ96BR9 441 aa8.75□□□□□ -1.01
SS18-203ENST00000415083 LRRC46Q96FV0 321 aa8.75□□□□□ -1.01
SS18-203ENST00000415083 NUDT22Q9BRQ3 303 aa8.75□□□□□ -1.01
SS18-203ENST00000415083 PNRC2Q9NPJ4 139 aaKnown RBP8.75□□□□□ -1.01
SS18-203ENST00000415083 ANAPC10Q9UM13 185 aa8.75□□□□□ -1.01
SS18-203ENST00000415083 OR6C76A6NM76 312 aa8.75□□□□□ -1.01
SS18-203ENST00000415083 ACTL6AO96019 429 aa8.75□□□□□ -1.01
SS18-203ENST00000415083 OPN1LWP04000 364 aa8.75□□□□□ -1.01
SS18-203ENST00000415083 ERCC1P07992 297 aaPredicted RBP8.75□□□□□ -1.01
SS18-203ENST00000415083 RAB6AP20340 208 aa8.75□□□□□ -1.01
SS18-203ENST00000415083 RPL35P42766 123 aaKnown RBP8.75□□□□□ -1.01
SS18-203ENST00000415083 MMP16P51512 607 aa8.75□□□□□ -1.01
SS18-203ENST00000415083 CXADRP78310 365 aa8.75□□□□□ -1.01
SS18-203ENST00000415083 GLO1Q04760 184 aa8.75□□□□□ -1.01
SS18-203ENST00000415083 MST1LQ2TV78 715 aa8.75□□□□□ -1.01
SS18-203ENST00000415083 PHF19Q5T6S3 580 aa8.75□□□□□ -1.01
SS18-203ENST00000415083 KCTD18Q6PI47 426 aaPredicted RBP8.75□□□□□ -1.01
SS18-203ENST00000415083 RAB33BQ9H082 229 aa8.75□□□□□ -1.01
SS18-203ENST00000415083 LPAR5Q9H1C0 372 aa8.75□□□□□ -1.01
SS18-203ENST00000415083 CDV3Q9UKY7 258 aaKnown RBP8.75□□□□□ -1.01
SS18-203ENST00000415083 MKL2Q9ULH7 1088 aa8.75□□□□□ -1.01
SS18-203ENST00000415083 CNTRLQ7Z7A1 2325 aa8.75□□□□□ -1.01
SS18-203ENST00000415083 RALGAPA1Q6GYQ0 2036 aa8.75□□□□□ -1.01
SS18-203ENST00000415083 SOCS1O15524 211 aa8.74□□□□□ -1.01
SS18-203ENST00000415083 CYB5AP00167 134 aa8.74□□□□□ -1.01
SS18-203ENST00000415083 PMP2P02689 132 aa8.74□□□□□ -1.01
SS18-203ENST00000415083 ABOP16442 354 aa8.74□□□□□ -1.01
SS18-203ENST00000415083 CDAP32320 146 aa8.74□□□□□ -1.01
SS18-203ENST00000415083 EIF1AXP47813 144 aaKnown RBP8.74□□□□□ -1.01
SS18-203ENST00000415083 TAF13Q15543 124 aa8.74□□□□□ -1.01
SS18-203ENST00000415083 THAP3Q8WTV1 239 aaPredicted RBP8.74□□□□□ -1.01
SS18-203ENST00000415083 POTEKPQ9BYX7 375 aa8.74□□□□□ -1.01
SS18-203ENST00000415083 TAS2R3Q9NYW6 316 aa8.74□□□□□ -1.01
SS18-203ENST00000415083 MBD2Q9UBB5 411 aa8.74□□□□□ -1.01
SS18-203ENST00000415083 IGHV1OR21-1A0A087WYE8 117 aa8.74□□□□□ -1.01
SS18-203ENST00000415083 IGKV1-9A0A0C4DH69 117 aa8.74□□□□□ -1.01
SS18-203ENST00000415083 FGF16O43320 207 aa8.74□□□□□ -1.01
SS18-203ENST00000415083 UBBP0CG47 229 aa8.74□□□□□ -1.01
SS18-203ENST00000415083 UBCP0CG48 685 aaKnown RBP8.74□□□□□ -1.01
SS18-203ENST00000415083 CNR1P21554 472 aa8.74□□□□□ -1.01
SS18-203ENST00000415083 BDKRB2P30411 391 aa8.74□□□□□ -1.01
SS18-203ENST00000415083 RPS27AP62979 156 aaKnown RBP8.74□□□□□ -1.01
SS18-203ENST00000415083 UBA52P62987 128 aaKnown RBP8.74□□□□□ -1.01
SS18-203ENST00000415083 SKP1P63208 163 aa8.74□□□□□ -1.01
SS18-203ENST00000415083 RNF4P78317 190 aa8.74□□□□□ -1.01
SS18-203ENST00000415083 POU3F1Q03052 451 aaPredicted RBP8.74□□□□□ -1.01
SS18-203ENST00000415083 FOXF1Q12946 379 aa8.74□□□□□ -1.01
SS18-203ENST00000415083 BIKQ13323 160 aa8.74□□□□□ -1.01
SS18-203ENST00000415083 GUCA2BQ16661 112 aa8.74□□□□□ -1.01
SS18-203ENST00000415083 MICBQ29980 383 aa8.74□□□□□ -1.01
SS18-203ENST00000415083 UNQ6126/PRO20091Q6UXV3 157 aa8.74□□□□□ -1.01
SS18-203ENST00000415083 ZSCAN4Q8NAM6 433 aaPredicted RBP8.74□□□□□ -1.01
SS18-203ENST00000415083 OR5AP2Q8NGF4 316 aa8.74□□□□□ -1.01
SS18-203ENST00000415083 SLAMF6Q96DU3 332 aa8.74□□□□□ -1.01
SS18-203ENST00000415083 ZNF416Q9BWM5 594 aa8.74□□□□□ -1.01
SS18-203ENST00000415083 PBOV1Q9GZY1 135 aa8.74□□□□□ -1.01
SS18-203ENST00000415083 C5orf66Q9H5L9 145 aa8.74□□□□□ -1.01
SS18-203ENST00000415083 C8orf33Q9H7E9 229 aaPredicted RBP8.74□□□□□ -1.01
SS18-203ENST00000415083 SUSD2Q9UGT4 822 aa8.74□□□□□ -1.01
SS18-203ENST00000415083 ZNF107Q9UII5 783 aaPredicted RBP8.74□□□□□ -1.01
SS18-203ENST00000415083 VDAC3Q9Y277 283 aa8.74□□□□□ -1.01
SS18-203ENST00000415083 F8VVB4 439 aa8.74□□□□□ -1.01
SS18-203ENST00000415083 F8VWA3 439 aa8.74□□□□□ -1.01
SS18-203ENST00000415083 FAM157CP0CG43 387 aa8.74□□□□□ -1.01
SS18-203ENST00000415083 OR3A4PP47883 348 aa8.74□□□□□ -1.01
SS18-203ENST00000415083 LBX1P52954 281 aa8.74□□□□□ -1.01
SS18-203ENST00000415083 CLVS2Q5SYC1 327 aa8.74□□□□□ -1.01
SS18-203ENST00000415083 FAM69BQ5VUD6 431 aa8.74□□□□□ -1.01
SS18-203ENST00000415083 C1QL2Q7Z5L3 287 aa8.74□□□□□ -1.01
SS18-203ENST00000415083 D2HGDHQ8N465 521 aa8.74□□□□□ -1.01
SS18-203ENST00000415083 OR4A4PQ8NGN8 299 aa8.74□□□□□ -1.01
SS18-203ENST00000415083 MARCH1Q8TCQ1 289 aa8.74□□□□□ -1.01
SS18-203ENST00000415083 ASB13Q8WXK3 278 aa8.74□□□□□ -1.01
SS18-203ENST00000415083 ZNF501Q96CX3 271 aaPredicted RBP8.74□□□□□ -1.01
SS18-203ENST00000415083 PCDHB16Q9NRJ7 776 aa8.74□□□□□ -1.01
SS18-203ENST00000415083 NOP16Q9Y3C1 178 aaKnown RBP8.74□□□□□ -1.01
SS18-203ENST00000415083 PMS2P1A4D2B8 440 aa8.73□□□□□ -1.01
SS18-203ENST00000415083 LIPT2A6NK58 231 aa8.73□□□□□ -1.01
SS18-203ENST00000415083 FOXI3A8MTJ6 420 aaPredicted RBP8.73□□□□□ -1.01
SS18-203ENST00000415083 GPR31O00270 319 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms