RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 COPS3Q9UNS2 423 aa7.93□□□□□ -1.14
VPS53-203ENST00000401468 KLHDC2Q9Y2U9 406 aa7.93□□□□□ -1.14
VPS53-203ENST00000401468 PCDHGB5Q9Y5G0 923 aa7.93□□□□□ -1.14
VPS53-203ENST00000401468 PCDHGB1Q9Y5G3 927 aa7.93□□□□□ -1.14
VPS53-203ENST00000401468 TMEM14AQ9Y6G1 99 aa7.93□□□□□ -1.14
VPS53-203ENST00000401468 COL6A5A8TX70 2615 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 LOC100509620A0A075B734 347 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 IRGMA1A4Y4 181 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 EFCAB10A6NFE3 127 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 PRR32B1ATL7 298 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 ZNF878C9JN71 531 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 TMCC2O75069 709 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 RAB36O95755 333 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 ABHD16AO95870 558 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 LYNP07948 512 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 CELA3BP08861 270 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 ADRA2AP08913 450 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 SPARCP09486 303 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 CRHBPP24387 322 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 PTAFRP25105 342 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 CD40P25942 277 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 STOMP27105 288 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 DCKP27707 260 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 DCTDP32321 178 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 NAA10P41227 235 aaPredicted RBP7.92□□□□□ -1.14
VPS53-203ENST00000401468 ACTC1P68032 377 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 ACTA1P68133 377 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 SLC35A2P78381 396 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 NAAAQ02083 359 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 PIGFQ07326 219 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 TNK1Q13470 666 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 CDONQ4KMG0 1287 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 ZNF774Q6NX45 483 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 FDX2Q6P4F2 183 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 CORO6Q6QEF8 472 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 TMEM108Q6UXF1 575 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 COLCA1Q6ZS62 124 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 LINC00346Q8IVM7 164 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 SLC35F2Q8IXU6 374 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 RFLNBQ8N5W9 214 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 OR4F15Q8NGB8 312 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 OR51G2Q8NGK0 314 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 OR52I1Q8NGK6 324 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 OR6N2Q8NGY6 317 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 OR2AJ1Q8NGZ0 328 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 OR1F12Q8NHA8 337 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 TMEM171Q8WVE6 324 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 ASB17Q8WXJ9 295 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 GGHQ92820 318 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 SLAMF6Q96DU3 332 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 CNBD2Q96M20 576 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 DCLRE1CQ96SD1 692 aaKnown RBP7.92□□□□□ -1.14
VPS53-203ENST00000401468 ATF6BQ99941 703 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 YTHDF1Q9BYJ9 559 aaKnown RBP7.92□□□□□ -1.14
VPS53-203ENST00000401468 DUSP21Q9H596 190 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 PAK1IP1Q9NWT1 392 aaPredicted RBP7.92□□□□□ -1.14
VPS53-203ENST00000401468 DIMT1Q9UNQ2 313 aaKnown RBP7.92□□□□□ -1.14
VPS53-203ENST00000401468 RNF115Q9Y4L5 304 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 HIVEP2P31629 2446 aa7.92□□□□□ -1.14
VPS53-203ENST00000401468 CUBNO60494 3623 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 IGHV2OR16-5A0A0B4J2B6 119 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 IQCMA0A1B0GVH7 501 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 A0A1W2PQL4 384 aaPredicted RBP7.91□□□□□ -1.14
VPS53-203ENST00000401468 KIAA1324LA8MWY0 1029 aaPredicted RBP7.91□□□□□ -1.14
VPS53-203ENST00000401468 ZNF670-ZNF695F2Z2N8 137 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 M0R1B8 84 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 ABCD4O14678 606 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 XPNPEP2O43895 674 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 DOK2O60496 412 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 ZNF254O75437 659 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 SRSF10O75494 262 aaKnown RBP7.91□□□□□ -1.14
VPS53-203ENST00000401468 SULT1C4O75897 302 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 LY6HO94772 140 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 FADS2O95864 444 aaKnown RBP7.91□□□□□ -1.14
VPS53-203ENST00000401468 CD3EP07766 207 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 MRPL3P09001 348 aaKnown RBP7.91□□□□□ -1.14
VPS53-203ENST00000401468 LIMS3P0CW19 117 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 LIMS4P0CW20 117 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 CALCRP30988 508 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 CAPZA2P47755 286 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 IDH3GP51553 393 aaPredicted RBP7.91□□□□□ -1.14
VPS53-203ENST00000401468 HCCSP53701 268 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 ZNF85Q03923 595 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 PLP2Q04941 152 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 MED21Q13503 144 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 EIF2B1Q14232 305 aaKnown RBP7.91□□□□□ -1.14
VPS53-203ENST00000401468 GALEQ14376 348 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 RAB39AQ14964 217 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 RBM48Q5RL73 367 aaKnown RBP7.91□□□□□ -1.14
VPS53-203ENST00000401468 SHEQ5VZ18 495 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 KCTD18Q6PI47 426 aaPredicted RBP7.91□□□□□ -1.14
VPS53-203ENST00000401468 SSX6Q7RTT6 188 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 PRSS45Q7RTY3 260 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 BIVMQ86UB2 503 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 PRIMA1Q86XR5 153 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 ZNF679Q8IYX0 411 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 ACBD7Q8N6N7 88 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 ZNF485Q8NCK3 441 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 SLC30A7Q8NEW0 376 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 NUP37Q8NFH4 326 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms