RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 OR51A4Q8NGJ6 313 aa13□□□□□ -0.33
CCDC88C-202ENST00000334448 AKR7LQ8NHP1 331 aa13□□□□□ -0.33
CCDC88C-202ENST00000334448 TBC1D15Q8TC07 691 aa13□□□□□ -0.33
CCDC88C-202ENST00000334448 VKORC1Q9BQB6 163 aa13□□□□□ -0.33
CCDC88C-202ENST00000334448 NOX3Q9HBY0 568 aa13□□□□□ -0.33
CCDC88C-202ENST00000334448 MOV10Q9HCE1 1003 aaKnown RBP13□□□□□ -0.33
CCDC88C-202ENST00000334448 NOX4Q9NPH5 578 aa13□□□□□ -0.33
CCDC88C-202ENST00000334448 TPRP12270 2363 aaKnown RBP13□□□□□ -0.33
CCDC88C-202ENST00000334448 FREM1Q5H8C1 2179 aa13□□□□□ -0.33
CCDC88C-202ENST00000334448 ATRXP46100 2492 aa12.99□□□□□ -0.33
CCDC88C-202ENST00000334448 A0A0G2JK05 382 aa12.99□□□□□ -0.33
CCDC88C-202ENST00000334448 LOC390937A0A1W2PQ73 354 aa12.99□□□□□ -0.33
CCDC88C-202ENST00000334448 DHRS7CA6NNS2 312 aa12.99□□□□□ -0.33
CCDC88C-202ENST00000334448 J3QW42 95 aa12.99□□□□□ -0.33
CCDC88C-202ENST00000334448 CASKO14936 926 aa12.99□□□□□ -0.33
CCDC88C-202ENST00000334448 CD2P06729 351 aa12.99□□□□□ -0.33
CCDC88C-202ENST00000334448 PATE4P0C8F1 98 aa12.99□□□□□ -0.33
CCDC88C-202ENST00000334448 ZNF12P17014 697 aa12.99□□□□□ -0.33
CCDC88C-202ENST00000334448 PSMB1P20618 241 aaKnown RBP12.99□□□□□ -0.33
CCDC88C-202ENST00000334448 PAX7P23759 505 aa12.99□□□□□ -0.33
CCDC88C-202ENST00000334448 RAB1AP62820 205 aa12.99□□□□□ -0.33
CCDC88C-202ENST00000334448 GSG1Q2KHT4 349 aa12.99□□□□□ -0.33
CCDC88C-202ENST00000334448 HIKESHIQ53FT3 197 aa12.99□□□□□ -0.33
CCDC88C-202ENST00000334448 RDH10Q8IZV5 341 aa12.99□□□□□ -0.33
CCDC88C-202ENST00000334448 PARP16Q8N5Y8 322 aa12.99□□□□□ -0.33
CCDC88C-202ENST00000334448 ZNF610Q8N9Z0 462 aa12.99□□□□□ -0.33
CCDC88C-202ENST00000334448 MCFD2Q8NI22 146 aa12.99□□□□□ -0.33
CCDC88C-202ENST00000334448 AP3S1Q92572 193 aa12.99□□□□□ -0.33
CCDC88C-202ENST00000334448 PPP1R14AQ96A00 147 aa12.99□□□□□ -0.33
CCDC88C-202ENST00000334448 TMEM106AQ96A25 262 aa12.99□□□□□ -0.33
CCDC88C-202ENST00000334448 KCTD12Q96CX2 325 aaKnown RBP12.99□□□□□ -0.33
CCDC88C-202ENST00000334448 KCNS3Q9BQ31 491 aa12.99□□□□□ -0.33
CCDC88C-202ENST00000334448 C1QTNF5Q9BXJ0 243 aa12.99□□□□□ -0.33
CCDC88C-202ENST00000334448 RGCCQ9H4X1 137 aa12.99□□□□□ -0.33
CCDC88C-202ENST00000334448 JKAMPQ9P055 326 aa12.99□□□□□ -0.33
CCDC88C-202ENST00000334448 ZNF319Q9P2F9 582 aa12.99□□□□□ -0.33
CCDC88C-202ENST00000334448 TINAGQ9UJW2 476 aa12.99□□□□□ -0.33
CCDC88C-202ENST00000334448 GTF2A1LQ9UNN4 478 aa12.99□□□□□ -0.33
CCDC88C-202ENST00000334448 DHDHQ9UQ10 334 aa12.99□□□□□ -0.33
CCDC88C-202ENST00000334448 PHF3Q92576 2039 aaKnown RBP12.99□□□□□ -0.33
CCDC88C-202ENST00000334448 SVILO95425 2214 aa12.98□□□□□ -0.33
CCDC88C-202ENST00000334448 GTF3C1Q12789 2109 aa12.98□□□□□ -0.33
CCDC88C-202ENST00000334448 A0A0G2JNJ9 132 aa12.98□□□□□ -0.33
CCDC88C-202ENST00000334448 A0A1B0GVI7 797 aa12.98□□□□□ -0.33
CCDC88C-202ENST00000334448 F5H5K5 113 aa12.98□□□□□ -0.33
CCDC88C-202ENST00000334448 DBHP09172 617 aa12.98□□□□□ -0.33
CCDC88C-202ENST00000334448 CLEC2LP0C7M8 214 aa12.98□□□□□ -0.33
CCDC88C-202ENST00000334448 CD37P11049 281 aa12.98□□□□□ -0.33
CCDC88C-202ENST00000334448 SRMP19623 302 aa12.98□□□□□ -0.33
CCDC88C-202ENST00000334448 CA7P43166 264 aa12.98□□□□□ -0.33
CCDC88C-202ENST00000334448 GALK2Q01415 458 aa12.98□□□□□ -0.33
CCDC88C-202ENST00000334448 HGFACQ04756 655 aa12.98□□□□□ -0.33
CCDC88C-202ENST00000334448 PLP2Q04941 152 aa12.98□□□□□ -0.33
CCDC88C-202ENST00000334448 HNRNPA0Q13151 305 aaKnown RBP12.98□□□□□ -0.33
CCDC88C-202ENST00000334448 CEP78Q5JTW2 689 aa12.98□□□□□ -0.33
CCDC88C-202ENST00000334448 SFRP5Q5T4F7 317 aa12.98□□□□□ -0.33
CCDC88C-202ENST00000334448 ASPHD2Q6ICH7 369 aa12.98□□□□□ -0.33
CCDC88C-202ENST00000334448 TMEM211Q6ICI0 200 aa12.98□□□□□ -0.33
CCDC88C-202ENST00000334448 ZNF529Q6P280 563 aa12.98□□□□□ -0.33
CCDC88C-202ENST00000334448 FAM57BQ71RH2 274 aa12.98□□□□□ -0.33
CCDC88C-202ENST00000334448 DOK3Q7L591 496 aa12.98□□□□□ -0.33
CCDC88C-202ENST00000334448 MRGPRGQ86SM5 289 aa12.98□□□□□ -0.33
CCDC88C-202ENST00000334448 NR2C2APQ86WQ0 139 aa12.98□□□□□ -0.33
CCDC88C-202ENST00000334448 ZNF584Q8IVC4 421 aa12.98□□□□□ -0.33
CCDC88C-202ENST00000334448 OR6Q1Q8NGQ2 317 aa12.98□□□□□ -0.33
CCDC88C-202ENST00000334448 TSEN15Q8WW01 171 aaKnown RBP12.98□□□□□ -0.33
CCDC88C-202ENST00000334448 SLC7A6Q92536 515 aa12.98□□□□□ -0.33
CCDC88C-202ENST00000334448 C10orf35Q96D05 121 aa12.98□□□□□ -0.33
CCDC88C-202ENST00000334448 PGAM5Q96HS1 289 aa12.98□□□□□ -0.33
CCDC88C-202ENST00000334448 POM121L2Q96KW2 1035 aa12.98□□□□□ -0.33
CCDC88C-202ENST00000334448 USB1Q9BQ65 265 aaKnown RBP12.98□□□□□ -0.33
CCDC88C-202ENST00000334448 OPN3Q9H1Y3 402 aaPredicted RBP12.98□□□□□ -0.33
CCDC88C-202ENST00000334448 OR10A2Q9H208 303 aa12.98□□□□□ -0.33
CCDC88C-202ENST00000334448 RNF121Q9H920 327 aa12.98□□□□□ -0.33
CCDC88C-202ENST00000334448 ZNF275Q9NSD4 429 aaPredicted RBP12.98□□□□□ -0.33
CCDC88C-202ENST00000334448 PLEKHB1Q9UF11 243 aaPredicted RBP12.98□□□□□ -0.33
CCDC88C-202ENST00000334448 Q9UFV3 132 aa12.98□□□□□ -0.33
CCDC88C-202ENST00000334448 FOXJ3Q9UPW0 622 aa12.98□□□□□ -0.33
CCDC88C-202ENST00000334448 ARHGAP21Q5T5U3 1957 aa12.98□□□□□ -0.33
CCDC88C-202ENST00000334448 POLEQ07864 2286 aa12.97□□□□□ -0.33
CCDC88C-202ENST00000334448 LOC100509620A0A075B734 347 aa12.97□□□□□ -0.33
CCDC88C-202ENST00000334448 CIB4A0PJX0 185 aa12.97□□□□□ -0.33
CCDC88C-202ENST00000334448 NOTOA8MTQ0 251 aa12.97□□□□□ -0.33
CCDC88C-202ENST00000334448 A8MXE2 369 aa12.97□□□□□ -0.33
CCDC88C-202ENST00000334448 P2RY10O00398 339 aa12.97□□□□□ -0.33
CCDC88C-202ENST00000334448 PDCD5O14737 125 aa12.97□□□□□ -0.33
CCDC88C-202ENST00000334448 SYT7O43581 403 aa12.97□□□□□ -0.33
CCDC88C-202ENST00000334448 LYZL6O75951 148 aa12.97□□□□□ -0.33
CCDC88C-202ENST00000334448 SERPINA5P05154 406 aa12.97□□□□□ -0.33
CCDC88C-202ENST00000334448 ANXA2P07355 339 aaKnown RBP12.97□□□□□ -0.33
CCDC88C-202ENST00000334448 INHBBP09529 407 aa12.97□□□□□ -0.33
CCDC88C-202ENST00000334448 SLC2A1P11166 492 aa12.97□□□□□ -0.33
CCDC88C-202ENST00000334448 ZNF14P17017 642 aaPredicted RBP12.97□□□□□ -0.33
CCDC88C-202ENST00000334448 IGFBP3P17936 291 aaPredicted RBP12.97□□□□□ -0.33
CCDC88C-202ENST00000334448 RAB3BP20337 219 aa12.97□□□□□ -0.33
CCDC88C-202ENST00000334448 ANOS1P23352 680 aa12.97□□□□□ -0.33
CCDC88C-202ENST00000334448 UBE2NP61088 152 aaKnown RBP12.97□□□□□ -0.33
CCDC88C-202ENST00000334448 LY6DQ14210 128 aa12.97□□□□□ -0.33
CCDC88C-202ENST00000334448 ZNF474Q6S9Z5 364 aaPredicted RBP12.97□□□□□ -0.33
CCDC88C-202ENST00000334448 C3P1Q6ZMU1 363 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms