RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 FREM1Q5H8C1 2179 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 ZNF716A6NP11 495 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 SAP18O00422 153 aaKnown RBP4.79□□□□□ -1.64
SCN1A-201ENST00000303395 ST8SIA5O15466 376 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 H2AFB1P0C5Y9 115 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 NDUFB7P17568 137 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 HNF1AP20823 631 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 FOLR3P41439 243 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 AGTR2P50052 363 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 ZNF273Q14593 569 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 VASH2Q86V25 355 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 ANGPTL5Q86XS5 388 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 CFAP52Q8N1V2 620 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 SLC35G3Q8N808 338 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 OR5B3Q8NH48 314 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 OR2T6Q8NHC8 308 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 GIMAP2Q9UG22 337 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 SBF2Q86WG5 1849 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 DVL2O14641 736 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 PRAMEF4O60810 478 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 FBXO24O75426 580 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 PRF1P14222 555 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 CLDN15P56746 228 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 MAT1AQ00266 395 aaKnown RBP4.79□□□□□ -1.64
SCN1A-201ENST00000303395 KCNMB1Q16558 191 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 SLC48A1Q6P1K1 146 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 WDR74Q6RFH5 385 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-201ENST00000303395 OR4F15Q8NGB8 312 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 LGALS14Q8TCE9 139 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 PACRGQ96M98 296 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-201ENST00000303395 IP6K3Q96PC2 410 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 RBM24Q9BX46 236 aaKnown RBP4.79□□□□□ -1.64
SCN1A-201ENST00000303395 TAF9BQ9HBM6 251 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 PHIPQ8WWQ0 1821 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 DBX1A6NMT0 343 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 GRXCR1A8MXD5 290 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 ZNF732B4DXR9 585 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 WNT11O96014 354 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 IRS1P35568 1242 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 ARR3P36575 388 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 CSKP41240 450 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 RPL35P42766 123 aaKnown RBP4.79□□□□□ -1.64
SCN1A-201ENST00000303395 NOVA1P51513 510 aaKnown RBP4.79□□□□□ -1.64
SCN1A-201ENST00000303395 KHDC3LQ587J8 217 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 MFSD12Q6NUT3 480 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 C17orf107Q6ZR85 190 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 LRRTM3Q86VH5 581 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 H1FXQ92522 213 aaKnown RBP4.79□□□□□ -1.64
SCN1A-201ENST00000303395 IL22RA2Q969J5 263 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 DTD2Q96FN9 168 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 KLHDC7BQ96G42 594 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 SGK494Q96LW2 274 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 ZFYVE21Q9BQ24 234 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 C16orf70Q9BSU1 422 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 BOCQ9BWV1 1114 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 MMP28Q9H239 520 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 A0A087WWC5 75 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 J3QW42 95 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 SPDEFO95238 335 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 HAND1O96004 215 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 COX5AP20674 150 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 AQP2P41181 271 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 SOX10P56693 466 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 BPIFB3P59826 476 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 SERF2P84101 59 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 GGTLC2Q14390 218 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 TMEM52BQ4KMG9 183 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 C6orf132Q5T0Z8 1188 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 LIPIQ6XZB0 460 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 PIM3Q86V86 326 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 ARRDC3Q96B67 414 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 IGSF21Q96ID5 467 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 HES4Q9HCC6 221 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 LPAR3Q9UBY5 353 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 FLVCR2Q9UPI3 526 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 MPDU1O75352 247 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 CHRM4P08173 479 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 ADH5P11766 374 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 RPS18P62269 152 aaKnown RBP4.79□□□□□ -1.64
SCN1A-201ENST00000303395 SLC35A1P78382 337 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 KRTCAP2Q8N6L1 136 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 OR10AD1Q8NGE0 317 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 OR1S2Q8NGQ3 325 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 GHSRQ92847 366 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 EGLN3Q9H6Z9 239 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 ZNF160Q9HCG1 818 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 OR14J1Q9UGF5 321 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 POLDIP2Q9Y2S7 368 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 MOB4Q9Y3A3 225 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 DSPPQ9NZW4 1301 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 LINC01549A6NIU2 74 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 GLOD5A6NK44 160 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 EEF1E1-BLOC1S5C9J1V9 151 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 G3V3Y1 287 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 FZD9O00144 591 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 OR2A4O95047 310 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 HLA-GP17693 338 aa4.79□□□□□ -1.64
SCN1A-201ENST00000303395 RPS10P46783 165 aaKnown RBP4.79□□□□□ -1.64
SCN1A-201ENST00000303395 IL24Q13007 206 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms