RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 A0A1W2PQY0 241 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 NCBP2LA6PVI3 153 aaKnown RBP5.84□□□□□ -1.47
VPS35-201ENST00000299138 SOX15O60248 233 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 SLC6A8P48029 635 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 KIR2DS3Q14952 304 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 COL19A1Q14993 1142 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 GUCA2BQ16661 112 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 NSUN5P2Q63ZY6 315 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 ACSM5Q6NUN0 579 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 CTU1Q7Z7A3 348 aaKnown RBP5.84□□□□□ -1.47
VPS35-201ENST00000299138 SLC35F2Q8IXU6 374 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 RXFP4Q8TDU9 374 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 OR1F2PQ96R84 312 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 ATG101Q9BSB4 218 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 MIOXQ9UGB7 285 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 OPN4Q9UHM6 478 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 KAT6AQ92794 2004 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 GOLGA4Q13439 2230 aaKnown RBP5.84□□□□□ -1.47
VPS35-201ENST00000299138 OR5K4A6NMS3 321 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 H7C2G1 150 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 KLKB1P03952 638 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 EIF4EP06730 217 aaKnown RBP5.84□□□□□ -1.47
VPS35-201ENST00000299138 SLC6A11P48066 632 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 LIM2P55344 173 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 MSMO1Q15800 293 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 ZNF385BQ569K4 471 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 ARTNQ5T4W7 220 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 FAM162BQ5T6X4 162 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 MFSD12Q6NUT3 480 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 OR2L13Q8N349 312 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 SLC6A18Q96N87 628 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 NUDT22Q9BRQ3 303 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 ZNF426Q9BUY5 554 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 CBX7O95931 251 aa5.84□□□□□ -1.48
VPS35-201ENST00000299138 F2RL1P55085 397 aa5.84□□□□□ -1.48
VPS35-201ENST00000299138 EGR3Q06889 387 aa5.84□□□□□ -1.48
VPS35-201ENST00000299138 ZNF266Q14584 549 aa5.84□□□□□ -1.48
VPS35-201ENST00000299138 STUMQ69YW2 141 aa5.84□□□□□ -1.48
VPS35-201ENST00000299138 SLC35E4Q6ICL7 350 aa5.84□□□□□ -1.48
VPS35-201ENST00000299138 LIPIQ6XZB0 460 aa5.84□□□□□ -1.48
VPS35-201ENST00000299138 UBE3DQ7Z6J8 389 aa5.84□□□□□ -1.48
VPS35-201ENST00000299138 LINC00518Q8N0U6 118 aa5.84□□□□□ -1.48
VPS35-201ENST00000299138 FAM169BQ8N8A8 192 aa5.84□□□□□ -1.48
VPS35-201ENST00000299138 TMEM229BQ8NBD8 167 aa5.84□□□□□ -1.48
VPS35-201ENST00000299138 KLK6Q92876 244 aa5.84□□□□□ -1.48
VPS35-201ENST00000299138 SPACA9Q96E40 222 aaPredicted RBP5.84□□□□□ -1.48
VPS35-201ENST00000299138 RNF186Q9NXI6 227 aa5.84□□□□□ -1.48
VPS35-201ENST00000299138 FER1L6Q2WGJ9 1857 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 SLC31A1O15431 190 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 DNPH1O43598 174 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 CRHP06850 196 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 OR8U8P0C7N1 319 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 PNLIPRP3Q17RR3 467 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 DEGS2Q6QHC5 323 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 OR10G3Q8NGC4 313 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 OR8D4Q8NGM9 314 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 OR2G2Q8NGZ5 317 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 OR4A16Q8NH70 328 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 OR14A16Q8NHC5 309 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 OR14C36Q8NHC7 312 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 PSMF1Q92530 271 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 GHSRQ92847 366 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 IRF7Q92985 503 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 DPH7Q9BTV6 452 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 CXCL16Q9H2A7 254 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 HINT3Q9NQE9 182 aaKnown RBP5.83□□□□□ -1.48
VPS35-201ENST00000299138 EXOSC3Q9NQT5 275 aaKnown RBP5.83□□□□□ -1.48
VPS35-201ENST00000299138 GJB5O95377 273 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 TNFRSF1BP20333 461 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 CSF2RBP32927 897 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 LTBQ06643 244 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 HLXQ14774 488 aaPredicted RBP5.83□□□□□ -1.48
VPS35-201ENST00000299138 CLLU1OSQ5K130 101 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 COX20Q5RI15 118 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 RPUSD3Q6P087 351 aaKnown RBP5.83□□□□□ -1.48
VPS35-201ENST00000299138 GDF7Q7Z4P5 450 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 OR4A4PQ8NGN8 299 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 RAB37Q96AX2 223 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 POFUT1Q9H488 388 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 OBP2AQ9NY56 170 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 PCDHB10Q9UN67 800 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 ZNF443Q9Y2A4 671 aaPredicted RBP5.83□□□□□ -1.48
VPS35-201ENST00000299138 CD8AP01732 235 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 MAP2K6P52564 334 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 B4GALNT1Q00973 533 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 DOC2BQ14184 412 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 OR8G1Q15617 311 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 SOWAHCQ53LP3 525 aaPredicted RBP5.83□□□□□ -1.48
VPS35-201ENST00000299138 LYSMD4Q5XG99 296 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 NCR3LG1Q68D85 454 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 FAM109BQ6ICB4 259 aaPredicted RBP5.83□□□□□ -1.48
VPS35-201ENST00000299138 ABHD17CQ6PCB6 329 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 THNSL2Q86YJ6 484 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 C10orf126Q8N4M7 172 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 OR6S1Q8NH40 331 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 DVL3Q92997 716 aaPredicted RBP5.83□□□□□ -1.48
VPS35-201ENST00000299138 ARRDC3Q96B67 414 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 SFRP2Q96HF1 295 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 SOX7Q9BT81 388 aa5.83□□□□□ -1.48
VPS35-201ENST00000299138 CARHSP1Q9Y2V2 147 aaKnown RBP5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms