RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 NKPD1Q17RQ9 610 aa9.23□□□□□ -0.93
UPF3B-201ENST00000276201 TEX30Q5JUR7 227 aa9.23□□□□□ -0.93
UPF3B-201ENST00000276201 GTPBP8Q8N3Z3 284 aaPredicted RBP9.23□□□□□ -0.93
UPF3B-201ENST00000276201 GALNT16Q8N428 558 aa9.23□□□□□ -0.93
UPF3B-201ENST00000276201 INO80EQ8NBZ0 244 aaPredicted RBP9.23□□□□□ -0.93
UPF3B-201ENST00000276201 PPP1R1CQ8WVI7 109 aa9.23□□□□□ -0.93
UPF3B-201ENST00000276201 NKD1Q969G9 470 aa9.23□□□□□ -0.93
UPF3B-201ENST00000276201 TCTN2Q96GX1 697 aa9.23□□□□□ -0.93
UPF3B-201ENST00000276201 G6PC3Q9BUM1 346 aa9.23□□□□□ -0.93
UPF3B-201ENST00000276201 NMES1Q9C002 83 aa9.23□□□□□ -0.93
UPF3B-201ENST00000276201 CHRNA10Q9GZZ6 450 aa9.23□□□□□ -0.93
UPF3B-201ENST00000276201 FANCFQ9NPI8 374 aa9.23□□□□□ -0.93
UPF3B-201ENST00000276201 SHPKQ9UHJ6 478 aa9.23□□□□□ -0.93
UPF3B-201ENST00000276201 ZNF230Q9UIE0 474 aaPredicted RBP9.23□□□□□ -0.93
UPF3B-201ENST00000276201 LAMP5Q9UJQ1 280 aa9.23□□□□□ -0.93
UPF3B-201ENST00000276201 POMT1Q9Y6A1 747 aa9.23□□□□□ -0.93
UPF3B-201ENST00000276201 LOC390937A0A1W2PQ73 354 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 DBX1A6NMT0 343 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 ZNF736B4DX44 427 aaPredicted RBP9.22□□□□□ -0.93
UPF3B-201ENST00000276201 TMEM150CB9EJG8 249 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 RPP14O95059 124 aaKnown RBP9.22□□□□□ -0.93
UPF3B-201ENST00000276201 CYB5AP00167 134 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 AMY2AP04746 511 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 CT62P0C5K7 136 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 CX3CR1P49238 355 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 AKR1D1P51857 326 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 PSG6Q00889 435 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 ZNF74Q16587 644 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 DEFB110Q30KQ9 67 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 C1orf100Q5SVJ3 147 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 ARHGAP40Q5TG30 622 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 RAB12Q6IQ22 244 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 VASH2Q86V25 355 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 PAQR4Q8N4S7 273 aaPredicted RBP9.22□□□□□ -0.93
UPF3B-201ENST00000276201 ZNF511Q8NB15 262 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 OR8K3Q8NH51 312 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 OR1L3Q8NH93 324 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 ELP5Q8TE02 316 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 ANKRD9Q96BM1 317 aaPredicted RBP9.22□□□□□ -0.93
UPF3B-201ENST00000276201 OR8B4Q96RC9 309 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 SPTBP11277 2137 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 C9orf170A2RU37 121 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 BLACEA4D250 179 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 F5H0A9 414 aaPredicted RBP9.22□□□□□ -0.93
UPF3B-201ENST00000276201 IGKV1D-16P01601 117 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 CTSBP07858 339 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 ASAH2BP0C7U1 165 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 PMELP40967 661 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 PRKXP51817 358 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 PNLIPRP2P54317 469 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 RAB38P57729 211 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 TAS2R31P59538 309 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 ROM1Q03395 351 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 SERTAD2Q14140 314 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 EXOSC7Q15024 291 aaKnown RBP9.22□□□□□ -0.93
UPF3B-201ENST00000276201 RNF212Q495C1 297 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 DEFB134Q4QY38 66 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 PRAMEF17Q5VTA0 474 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 YOD1Q5VVQ6 348 aaPredicted RBP9.22□□□□□ -0.93
UPF3B-201ENST00000276201 FIGLAQ6QHK4 219 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 ADGRE4PQ86SQ3 457 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 HEATR5AQ86XA9 2040 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 BAP18Q8IXM2 172 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 BPIFB2Q8N4F0 458 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 RNF128Q8TEB7 428 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 PHB2Q99623 299 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 ATG5Q9H1Y0 275 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 ASF1BQ9NVP2 202 aa9.22□□□□□ -0.93
UPF3B-201ENST00000276201 NOSIPQ9Y314 301 aaKnown RBP9.22□□□□□ -0.93
UPF3B-201ENST00000276201 NOP16Q9Y3C1 178 aaKnown RBP9.22□□□□□ -0.93
UPF3B-201ENST00000276201 SERINC4A6NH21 518 aa9.21□□□□□ -0.93
UPF3B-201ENST00000276201 TVP23AA6NH52 213 aa9.21□□□□□ -0.93
UPF3B-201ENST00000276201 OR2AT4A6NND4 320 aa9.21□□□□□ -0.93
UPF3B-201ENST00000276201 EFSO43281 561 aa9.21□□□□□ -0.93
UPF3B-201ENST00000276201 SCGNO76038 276 aa9.21□□□□□ -0.93
UPF3B-201ENST00000276201 RENP00797 406 aa9.21□□□□□ -0.93
UPF3B-201ENST00000276201 CRHP06850 196 aa9.21□□□□□ -0.93
UPF3B-201ENST00000276201 FAM157CP0CG43 387 aa9.21□□□□□ -0.93
UPF3B-201ENST00000276201 WT1P19544 449 aaPredicted RBP9.21□□□□□ -0.93
UPF3B-201ENST00000276201 GSK3AP49840 483 aa9.21□□□□□ -0.93
UPF3B-201ENST00000276201 ATP1B3P54709 279 aa9.21□□□□□ -0.93
UPF3B-201ENST00000276201 SNRPNP63162 240 aaKnown RBP9.21□□□□□ -0.93
UPF3B-201ENST00000276201 BLOC1S1P78537 153 aa9.21□□□□□ -0.93
UPF3B-201ENST00000276201 SLC17A1Q14916 467 aa9.21□□□□□ -0.93
UPF3B-201ENST00000276201 TAF13Q15543 124 aa9.21□□□□□ -0.93
UPF3B-201ENST00000276201 CPEB4Q17RY0 729 aaKnown RBP eCLIP9.21□□□□□ -0.93
UPF3B-201ENST00000276201 WDR38Q5JTN6 314 aa9.21□□□□□ -0.93
UPF3B-201ENST00000276201 WBP2NLQ6ICG8 309 aa9.21□□□□□ -0.93
UPF3B-201ENST00000276201 H3F3CQ6NXT2 135 aa9.21□□□□□ -0.93
UPF3B-201ENST00000276201 ATG4DQ86TL0 474 aaPredicted RBP9.21□□□□□ -0.93
UPF3B-201ENST00000276201 CA13Q8N1Q1 262 aa9.21□□□□□ -0.93
UPF3B-201ENST00000276201 LINC00469Q8N7U9 141 aa9.21□□□□□ -0.93
UPF3B-201ENST00000276201 OR52R1Q8NGF1 315 aa9.21□□□□□ -0.93
UPF3B-201ENST00000276201 OTOSQ8NHW6 89 aa9.21□□□□□ -0.93
UPF3B-201ENST00000276201 AQP3Q92482 292 aa9.21□□□□□ -0.93
UPF3B-201ENST00000276201 VSTM2LQ96N03 204 aa9.21□□□□□ -0.93
UPF3B-201ENST00000276201 INTS14Q96SY0 518 aa9.21□□□□□ -0.93
UPF3B-201ENST00000276201 TINAGL1Q9GZM7 467 aaPredicted RBP9.21□□□□□ -0.93
UPF3B-201ENST00000276201 ACKR4Q9NPB9 350 aa9.21□□□□□ -0.93
UPF3B-201ENST00000276201 CYTL1Q9NRR1 136 aa9.21□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms