RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 JAGN1Q8N5M9 183 aa14.45□□□□□ -0.1
USP4-201ENST00000265560 OR13C9Q8NGT0 318 aa14.45□□□□□ -0.1
USP4-201ENST00000265560 CPT1CQ8TCG5 803 aa14.45□□□□□ -0.1
USP4-201ENST00000265560 APH1AQ96BI3 265 aa14.45□□□□□ -0.1
USP4-201ENST00000265560 PGAM5Q96HS1 289 aa14.45□□□□□ -0.1
USP4-201ENST00000265560 OR5V1Q9UGF6 321 aa14.45□□□□□ -0.1
USP4-201ENST00000265560 A0A1B0GTI1 187 aa14.45□□□□□ -0.1
USP4-201ENST00000265560 ZNF12P17014 697 aa14.45□□□□□ -0.1
USP4-201ENST00000265560 ZNF133P52736 654 aaPredicted RBP14.45□□□□□ -0.1
USP4-201ENST00000265560 PLEKHN1Q494U1 663 aaPredicted RBP14.45□□□□□ -0.1
USP4-201ENST00000265560 ZNF704Q6ZNC4 412 aaPredicted RBP14.45□□□□□ -0.1
USP4-201ENST00000265560 DTNBP1Q96EV8 351 aa14.45□□□□□ -0.1
USP4-201ENST00000265560 ABHD17AQ96GS6 310 aa14.45□□□□□ -0.1
USP4-201ENST00000265560 IGKV3D-15A0A087WSY6 115 aa14.44□□□□□ -0.1
USP4-201ENST00000265560 HSPB2A8KAH6 182 aa14.44□□□□□ -0.1
USP4-201ENST00000265560 EFNB2P52799 333 aa14.44□□□□□ -0.1
USP4-201ENST00000265560 OXA1LQ15070 435 aa14.44□□□□□ -0.1
USP4-201ENST00000265560 HSPB2Q16082 182 aa14.44□□□□□ -0.1
USP4-201ENST00000265560 ZNF181Q2M3W8 571 aa14.44□□□□□ -0.1
USP4-201ENST00000265560 TMEM244Q5VVB8 128 aa14.44□□□□□ -0.1
USP4-201ENST00000265560 XKRXQ6PP77 449 aa14.44□□□□□ -0.1
USP4-201ENST00000265560 ACOT12Q8WYK0 555 aa14.44□□□□□ -0.1
USP4-201ENST00000265560 NEDD4LQ96PU5 975 aa14.44□□□□□ -0.1
USP4-201ENST00000265560 M0R135 149 aa14.44□□□□□ -0.1
USP4-201ENST00000265560 PDCD5O14737 125 aa14.44□□□□□ -0.1
USP4-201ENST00000265560 HTR5AP47898 357 aa14.44□□□□□ -0.1
USP4-201ENST00000265560 GLYATL3Q5SZD4 288 aa14.44□□□□□ -0.1
USP4-201ENST00000265560 ZNF585AQ6P3V2 769 aa14.44□□□□□ -0.1
USP4-201ENST00000265560 HAVCR2Q8TDQ0 301 aa14.44□□□□□ -0.1
USP4-201ENST00000265560 ZNF799Q96GE5 643 aa14.44□□□□□ -0.1
USP4-201ENST00000265560 CYSLTR2Q9NS75 346 aa14.44□□□□□ -0.1
USP4-201ENST00000265560 ZNF275Q9NSD4 429 aaPredicted RBP14.44□□□□□ -0.1
USP4-201ENST00000265560 EMC3Q9P0I2 261 aa14.44□□□□□ -0.1
USP4-201ENST00000265560 NUFIP1Q9UHK0 495 aaKnown RBP14.44□□□□□ -0.1
USP4-201ENST00000265560 WASF3Q9UPY6 502 aa14.44□□□□□ -0.1
USP4-201ENST00000265560 A0A1B0GVI7 797 aa14.44□□□□□ -0.1
USP4-201ENST00000265560 CFL1P23528 166 aaKnown RBP14.44□□□□□ -0.1
USP4-201ENST00000265560 TALDO1P37837 337 aa14.44□□□□□ -0.1
USP4-201ENST00000265560 TSC22D1Q15714 1073 aa14.44□□□□□ -0.1
USP4-201ENST00000265560 BCL2A1Q16548 175 aa14.44□□□□□ -0.1
USP4-201ENST00000265560 GDPD3Q7L5L3 318 aa14.44□□□□□ -0.1
USP4-201ENST00000265560 GLCCI1Q86VQ1 547 aa14.44□□□□□ -0.1
USP4-201ENST00000265560 LRRC28Q86X40 367 aaPredicted RBP14.44□□□□□ -0.1
USP4-201ENST00000265560 RBMXL3Q8N7X1 1067 aaKnown RBP14.44□□□□□ -0.1
USP4-201ENST00000265560 CNEP1R1Q8N9A8 125 aa14.44□□□□□ -0.1
USP4-201ENST00000265560 PHYHIPQ92561 330 aa14.44□□□□□ -0.1
USP4-201ENST00000265560 KCNJ15Q99712 375 aa14.44□□□□□ -0.1
USP4-201ENST00000265560 RNF121Q9H920 327 aa14.44□□□□□ -0.1
USP4-201ENST00000265560 UBCP0CG48 685 aaKnown RBP14.43□□□□□ -0.1
USP4-201ENST00000265560 CPN1P15169 458 aa14.43□□□□□ -0.1
USP4-201ENST00000265560 NPR2P20594 1047 aa14.43□□□□□ -0.1
USP4-201ENST00000265560 ACHEP22303 614 aa14.43□□□□□ -0.1
USP4-201ENST00000265560 FOXL2NBQ6ZUU3 175 aa14.43□□□□□ -0.1
USP4-201ENST00000265560 NRARPQ7Z6K4 114 aa14.43□□□□□ -0.1
USP4-201ENST00000265560 SLC25A38Q96DW6 304 aa14.43□□□□□ -0.1
USP4-201ENST00000265560 COX4I2Q96KJ9 171 aa14.43□□□□□ -0.1
USP4-201ENST00000265560 LYZL4Q96KX0 146 aa14.43□□□□□ -0.1
USP4-201ENST00000265560 WACQ9BTA9 647 aa14.43□□□□□ -0.1
USP4-201ENST00000265560 ZCCHC4Q9H5U6 513 aa14.43□□□□□ -0.1
USP4-201ENST00000265560 PAQR5Q9NXK6 330 aaPredicted RBP14.43□□□□□ -0.1
USP4-201ENST00000265560 CKLFQ9UBR5 152 aa14.43□□□□□ -0.1
USP4-201ENST00000265560 EEF1E1O43324 174 aaKnown RBP14.43□□□□□ -0.1
USP4-201ENST00000265560 RAF1P04049 648 aa14.43□□□□□ -0.1
USP4-201ENST00000265560 CD79AP11912 226 aa14.43□□□□□ -0.1
USP4-201ENST00000265560 HIKESHIQ53FT3 197 aa14.43□□□□□ -0.1
USP4-201ENST00000265560 CPEB3Q8NE35 698 aaKnown RBP14.43□□□□□ -0.1
USP4-201ENST00000265560 OR52N4Q8NGI2 321 aa14.43□□□□□ -0.1
USP4-201ENST00000265560 SYNPRQ8TBG9 265 aa14.43□□□□□ -0.1
USP4-201ENST00000265560 HDHD2Q9H0R4 259 aa14.43□□□□□ -0.1
USP4-201ENST00000265560 BCO1Q9HAY6 547 aa14.43□□□□□ -0.1
USP4-201ENST00000265560 KALRNO60229 2985 aa14.43□□□□□ -0.1
USP4-201ENST00000265560 ZNF587BE7ETH6 402 aa14.42□□□□□ -0.1
USP4-201ENST00000265560 SLC19A2O60779 497 aa14.42□□□□□ -0.1
USP4-201ENST00000265560 ISG15P05161 165 aa14.42□□□□□ -0.1
USP4-201ENST00000265560 SRP9P49458 86 aaKnown RBP14.42□□□□□ -0.1
USP4-201ENST00000265560 PABPC1L2AQ5JQF8 200 aa14.42□□□□□ -0.1
USP4-201ENST00000265560 KCTD12Q96CX2 325 aaKnown RBP14.42□□□□□ -0.1
USP4-201ENST00000265560 SOSTQ9BQB4 213 aa14.42□□□□□ -0.1
USP4-201ENST00000265560 OR51B6Q9H340 312 aa14.42□□□□□ -0.1
USP4-201ENST00000265560 NOX3Q9HBY0 568 aa14.42□□□□□ -0.1
USP4-201ENST00000265560 PARPBPQ9NWS1 579 aa14.42□□□□□ -0.1
USP4-201ENST00000265560 RHBDL2Q9NX52 303 aa14.42□□□□□ -0.1
USP4-201ENST00000265560 ZNF224Q9NZL3 707 aa14.42□□□□□ -0.1
USP4-201ENST00000265560 SPATA2Q9UM82 520 aa14.42□□□□□ -0.1
USP4-201ENST00000265560 LCATP04180 440 aa14.42□□□□□ -0.1
USP4-201ENST00000265560 CD3GP09693 182 aa14.42□□□□□ -0.1
USP4-201ENST00000265560 AGTR1P30556 359 aa14.42□□□□□ -0.1
USP4-201ENST00000265560 WNT5BQ9H1J7 359 aa14.42□□□□□ -0.1
USP4-201ENST00000265560 MRPL15Q9P015 296 aaKnown RBP14.42□□□□□ -0.1
USP4-201ENST00000265560 PCDHGA9Q9Y5G4 932 aaKnown RBP14.42□□□□□ -0.1
USP4-201ENST00000265560 GRB2P62993 217 aaKnown RBP14.41□□□□□ -0.1
USP4-201ENST00000265560 EGFL6Q8IUX8 553 aa14.41□□□□□ -0.1
USP4-201ENST00000265560 RFT1Q96AA3 541 aa14.41□□□□□ -0.1
USP4-201ENST00000265560 TMEM45BQ96B21 275 aa14.41□□□□□ -0.1
USP4-201ENST00000265560 MS4A3Q96HJ5 214 aa14.41□□□□□ -0.1
USP4-201ENST00000265560 ABRACLQ9P1F3 81 aa14.41□□□□□ -0.1
USP4-201ENST00000265560 ADAM30Q9UKF2 790 aa14.41□□□□□ -0.1
USP4-201ENST00000265560 TP53TG5Q9Y2B4 290 aa14.41□□□□□ -0.1
USP4-201ENST00000265560 SYNGR3O43761 229 aa14.41□□□□□ -0.1
USP4-201ENST00000265560 PFDN1O60925 122 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms