RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 OR10S1Q8NGN2 331 aa17.7■□□□□ 0.42
CLN3-240ENST00000631023 UBASH3BQ8TF42 649 aa17.7■□□□□ 0.42
CLN3-240ENST00000631023 SLAMF6Q96DU3 332 aa17.7■□□□□ 0.42
CLN3-240ENST00000631023 COPS4Q9BT78 406 aa17.7■□□□□ 0.42
CLN3-240ENST00000631023 GABARAPL3Q9BY60 117 aa17.7■□□□□ 0.42
CLN3-240ENST00000631023 CENPMQ9NSP4 180 aa17.7■□□□□ 0.42
CLN3-240ENST00000631023 H2AFY2Q9P0M6 372 aaPredicted RBP17.7■□□□□ 0.42
CLN3-240ENST00000631023 ZNF878C9JN71 531 aa17.7■□□□□ 0.42
CLN3-240ENST00000631023 M0R135 149 aa17.7■□□□□ 0.42
CLN3-240ENST00000631023 TLX2O43763 284 aaPredicted RBP17.7■□□□□ 0.42
CLN3-240ENST00000631023 PRKYO43930 277 aa17.7■□□□□ 0.42
CLN3-240ENST00000631023 TIMM8AO60220 97 aaPredicted RBP17.7■□□□□ 0.42
CLN3-240ENST00000631023 SLC25A16P16260 332 aa17.7■□□□□ 0.42
CLN3-240ENST00000631023 SLC2A5P22732 501 aa17.7■□□□□ 0.42
CLN3-240ENST00000631023 ZNF81P51508 661 aa17.7■□□□□ 0.42
CLN3-240ENST00000631023 PSG7Q13046 419 aa17.7■□□□□ 0.42
CLN3-240ENST00000631023 APOFQ13790 326 aa17.7■□□□□ 0.42
CLN3-240ENST00000631023 EIF2B1Q14232 305 aaKnown RBP17.7■□□□□ 0.42
CLN3-240ENST00000631023 ZSCAN26Q16670 478 aa17.7■□□□□ 0.42
CLN3-240ENST00000631023 C12orf73Q69YU5 71 aa17.7■□□□□ 0.42
CLN3-240ENST00000631023 TIGD4Q8IY51 512 aa17.7■□□□□ 0.42
CLN3-240ENST00000631023 PQLC1Q8N2U9 271 aa17.7■□□□□ 0.42
CLN3-240ENST00000631023 ZNF540Q8NDQ6 660 aa17.7■□□□□ 0.42
CLN3-240ENST00000631023 BBS1Q8NFJ9 593 aa17.7■□□□□ 0.42
CLN3-240ENST00000631023 ST7LQ8TDW4 575 aa17.7■□□□□ 0.42
CLN3-240ENST00000631023 C10orf105Q8TEF2 133 aa17.7■□□□□ 0.42
CLN3-240ENST00000631023 CMBLQ96DG6 245 aa17.7■□□□□ 0.42
CLN3-240ENST00000631023 ZNF799Q96GE5 643 aa17.7■□□□□ 0.42
CLN3-240ENST00000631023 C1QTNF5Q9BXJ0 243 aa17.7■□□□□ 0.42
CLN3-240ENST00000631023 RIBC2Q9H4K1 309 aa17.7■□□□□ 0.42
CLN3-240ENST00000631023 NKIRAS2Q9NYR9 191 aa17.7■□□□□ 0.42
CLN3-240ENST00000631023 IGHV4-30-2A0A087WSY4 118 aa17.69■□□□□ 0.42
CLN3-240ENST00000631023 LCATP04180 440 aa17.69■□□□□ 0.42
CLN3-240ENST00000631023 ALPLP05186 524 aa17.69■□□□□ 0.42
CLN3-240ENST00000631023 PSKH1P11801 424 aa17.69■□□□□ 0.42
CLN3-240ENST00000631023 RAC2P15153 192 aa17.69■□□□□ 0.42
CLN3-240ENST00000631023 SLC6A9P48067 706 aa17.69■□□□□ 0.42
CLN3-240ENST00000631023 RAD23AP54725 363 aa17.69■□□□□ 0.42
CLN3-240ENST00000631023 LCN1P1Q5VSP4 162 aa17.69■□□□□ 0.42
CLN3-240ENST00000631023 COLCA1Q6ZS62 124 aa17.69■□□□□ 0.42
CLN3-240ENST00000631023 RHOUQ7L0Q8 258 aa17.69■□□□□ 0.42
CLN3-240ENST00000631023 ZNF786Q8N393 782 aa17.69■□□□□ 0.42
CLN3-240ENST00000631023 TCEANCQ8N8B7 351 aa17.69■□□□□ 0.42
CLN3-240ENST00000631023 ZNF454Q8N9F8 522 aa17.69■□□□□ 0.42
CLN3-240ENST00000631023 HAVCR1Q96D42 359 aa17.69■□□□□ 0.42
CLN3-240ENST00000631023 PIMREGQ9BSJ6 248 aa17.69■□□□□ 0.42
CLN3-240ENST00000631023 C9orf16Q9BUW7 83 aa17.69■□□□□ 0.42
CLN3-240ENST00000631023 POFUT1Q9H488 388 aa17.69■□□□□ 0.42
CLN3-240ENST00000631023 USE1Q9NZ43 259 aa17.69■□□□□ 0.42
CLN3-240ENST00000631023 EI24O14681 340 aa17.68■□□□□ 0.42
CLN3-240ENST00000631023 BAG2O95816 211 aa17.68■□□□□ 0.42
CLN3-240ENST00000631023 KITLGP21583 273 aa17.68■□□□□ 0.42
CLN3-240ENST00000631023 MMP15P51511 669 aa17.68■□□□□ 0.42
CLN3-240ENST00000631023 ALDH3A2P51648 485 aa17.68■□□□□ 0.42
CLN3-240ENST00000631023 GRB2P62993 217 aaKnown RBP17.68■□□□□ 0.42
CLN3-240ENST00000631023 MALLQ13021 153 aa17.68■□□□□ 0.42
CLN3-240ENST00000631023 DRAM2Q6UX65 266 aa17.68■□□□□ 0.42
CLN3-240ENST00000631023 FBXW12Q6X9E4 464 aa17.68■□□□□ 0.42
CLN3-240ENST00000631023 TMEM163Q8TC26 289 aa17.68■□□□□ 0.42
CLN3-240ENST00000631023 TEAD3Q99594 435 aa17.68■□□□□ 0.42
CLN3-240ENST00000631023 KCNJ15Q99712 375 aa17.68■□□□□ 0.42
CLN3-240ENST00000631023 ABHD6Q9BV23 337 aa17.68■□□□□ 0.42
CLN3-240ENST00000631023 DECR2Q9NUI1 292 aa17.68■□□□□ 0.42
CLN3-240ENST00000631023 PTTG3PQ9NZH4 202 aa17.68■□□□□ 0.42
CLN3-240ENST00000631023 PURGQ9UJV8 347 aaKnown RBP17.68■□□□□ 0.42
CLN3-240ENST00000631023 ZANQ9Y493 2812 aa17.68■□□□□ 0.42
CLN3-240ENST00000631023 OTX1P32242 354 aaPredicted RBP17.67■□□□□ 0.42
CLN3-240ENST00000631023 POLR2IP36954 125 aaKnown RBP17.67■□□□□ 0.42
CLN3-240ENST00000631023 EFNB1P98172 346 aa17.67■□□□□ 0.42
CLN3-240ENST00000631023 NXNL2Q5VZ03 156 aa17.67■□□□□ 0.42
CLN3-240ENST00000631023 CBR4Q8N4T8 237 aa17.67■□□□□ 0.42
CLN3-240ENST00000631023 DIRC2Q96SL1 478 aa17.67■□□□□ 0.42
CLN3-240ENST00000631023 TOR3AQ9H497 397 aa17.67■□□□□ 0.42
CLN3-240ENST00000631023 ZDHHC8Q9ULC8 765 aa17.67■□□□□ 0.42
CLN3-240ENST00000631023 TPD52L2O43399 206 aaKnown RBP17.66■□□□□ 0.42
CLN3-240ENST00000631023 SELENOFO60613 162 aa17.66■□□□□ 0.42
CLN3-240ENST00000631023 APOC1P02654 83 aa17.66■□□□□ 0.42
CLN3-240ENST00000631023 MRPS11P82912 194 aaKnown RBP17.66■□□□□ 0.42
CLN3-240ENST00000631023 TMEM255AQ5JRV8 349 aa17.66■□□□□ 0.42
CLN3-240ENST00000631023 NAA40Q86UY6 237 aa17.66■□□□□ 0.42
CLN3-240ENST00000631023 OTOSQ8NHW6 89 aa17.66■□□□□ 0.42
CLN3-240ENST00000631023 THEM6Q8WUY1 208 aa17.66■□□□□ 0.42
CLN3-240ENST00000631023 RNF133Q8WVZ7 376 aa17.66■□□□□ 0.42
CLN3-240ENST00000631023 RDH5Q92781 318 aa17.66■□□□□ 0.42
CLN3-240ENST00000631023 IL4I1Q96RQ9 567 aa17.66■□□□□ 0.42
CLN3-240ENST00000631023 SPRY3O43610 288 aa17.66■□□□□ 0.42
CLN3-240ENST00000631023 HPXP02790 462 aa17.66■□□□□ 0.42
CLN3-240ENST00000631023 LYNP07948 512 aa17.66■□□□□ 0.42
CLN3-240ENST00000631023 HSD11B1P28845 292 aa17.66■□□□□ 0.42
CLN3-240ENST00000631023 NAA10P41227 235 aaPredicted RBP17.66■□□□□ 0.42
CLN3-240ENST00000631023 MAGEB1P43366 347 aa17.66■□□□□ 0.42
CLN3-240ENST00000631023 PRKXP51817 358 aa17.66■□□□□ 0.42
CLN3-240ENST00000631023 CCL8P80075 99 aa17.66■□□□□ 0.42
CLN3-240ENST00000631023 HLXQ14774 488 aaPredicted RBP17.66■□□□□ 0.42
CLN3-240ENST00000631023 FAM209AQ5JX71 171 aa17.66■□□□□ 0.42
CLN3-240ENST00000631023 ZBTB49Q6ZSB9 765 aa17.66■□□□□ 0.42
CLN3-240ENST00000631023 SPATC1Q76KD6 591 aa17.66■□□□□ 0.42
CLN3-240ENST00000631023 MEPCEQ7L2J0 689 aaKnown RBP17.66■□□□□ 0.42
CLN3-240ENST00000631023 SLC16A9Q7RTY1 509 aa17.66■□□□□ 0.42
CLN3-240ENST00000631023 EME1Q96AY2 570 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms