RNA–Protein interactions for RNA: ENST00000600523.5

SRRM1-223, Transcript of serine and arginine repetitive matrix 1, human

TSL 5

Gene SRRM1, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SRRM1-223	ENST00000600523	WARS2	Q9UGM6	360 aa	Known RBP	11.18	□□□□□ -0.62
SRRM1-223	ENST00000600523	AKAP8L	Q9ULX6	646 aa	Known RBP eCLIP	11.18	□□□□□ -0.62
SRRM1-223	ENST00000600523	CREBBP	Q92793	2442 aa		11.18	□□□□□ -0.62
SRRM1-223	ENST00000600523	HRNR	Q86YZ3	2850 aa	Predicted RBP	11.17	□□□□□ -0.62
SRRM1-223	ENST00000600523	SSX4	O60224	188 aa		11.17	□□□□□ -0.62
SRRM1-223	ENST00000600523	SELENOF	O60613	162 aa		11.17	□□□□□ -0.62
SRRM1-223	ENST00000600523	F12	P00748	615 aa	Predicted RBP	11.17	□□□□□ -0.62
SRRM1-223	ENST00000600523	IGHV3-13	P01766	116 aa		11.17	□□□□□ -0.62
SRRM1-223	ENST00000600523	DBH	P09172	617 aa		11.17	□□□□□ -0.62
SRRM1-223	ENST00000600523	SELE	P16581	610 aa		11.17	□□□□□ -0.62
SRRM1-223	ENST00000600523	SLC2A5	P22732	501 aa		11.17	□□□□□ -0.62
SRRM1-223	ENST00000600523	ELF3	P78545	371 aa	Predicted RBP	11.17	□□□□□ -0.62
SRRM1-223	ENST00000600523	CLEC12B	Q2HXU8	276 aa		11.17	□□□□□ -0.62
SRRM1-223	ENST00000600523	SPATC1	Q76KD6	591 aa		11.17	□□□□□ -0.62
SRRM1-223	ENST00000600523	GALNT4	Q8N4A0	578 aa		11.17	□□□□□ -0.62
SRRM1-223	ENST00000600523	ZNF283	Q8N7M2	679 aa		11.17	□□□□□ -0.62
SRRM1-223	ENST00000600523	ASB17	Q8WXJ9	295 aa		11.17	□□□□□ -0.62
SRRM1-223	ENST00000600523	MARS2	Q96GW9	593 aa	Known RBP	11.17	□□□□□ -0.62
SRRM1-223	ENST00000600523	MYCBP	Q99417	103 aa	Predicted RBP	11.17	□□□□□ -0.62
SRRM1-223	ENST00000600523	ABHD6	Q9BV23	337 aa		11.17	□□□□□ -0.62
SRRM1-223	ENST00000600523	MRO	Q9BYG7	248 aa		11.17	□□□□□ -0.62
SRRM1-223	ENST00000600523	NIPAL2	Q9H841	368 aa		11.17	□□□□□ -0.62
SRRM1-223	ENST00000600523	MAST4	O15021	2626 aa		11.16	□□□□□ -0.62
SRRM1-223	ENST00000600523	IGLV3-9	A0A075B6K5	115 aa		11.16	□□□□□ -0.62
SRRM1-223	ENST00000600523	LOC100130705	A0A1B0GUX0	176 aa		11.16	□□□□□ -0.62
SRRM1-223	ENST00000600523	ZNF670-ZNF695	F2Z2N8	137 aa		11.16	□□□□□ -0.62
SRRM1-223	ENST00000600523	TPD52L2	O43399	206 aa	Known RBP	11.16	□□□□□ -0.62
SRRM1-223	ENST00000600523	NGF	P01138	241 aa		11.16	□□□□□ -0.62
SRRM1-223	ENST00000600523	IGHV4-39	P01824	125 aa		11.16	□□□□□ -0.62
SRRM1-223	ENST00000600523	MRPL3	P09001	348 aa	Known RBP	11.16	□□□□□ -0.62
SRRM1-223	ENST00000600523	ACSM4	P0C7M7	580 aa		11.16	□□□□□ -0.62
SRRM1-223	ENST00000600523	RAC2	P15153	192 aa		11.16	□□□□□ -0.62
SRRM1-223	ENST00000600523	TNFSF4	P23510	183 aa		11.16	□□□□□ -0.62
SRRM1-223	ENST00000600523	ALDH3B1	P43353	468 aa		11.16	□□□□□ -0.62
SRRM1-223	ENST00000600523	ERVS71-1	P61550	626 aa		11.16	□□□□□ -0.62
SRRM1-223	ENST00000600523	GGTLC2	Q14390	218 aa		11.16	□□□□□ -0.62
SRRM1-223	ENST00000600523	TESK1	Q15569	626 aa		11.16	□□□□□ -0.62
SRRM1-223	ENST00000600523	AADACL4	Q5VUY2	407 aa		11.16	□□□□□ -0.62
SRRM1-223	ENST00000600523	KRT77	Q7Z794	578 aa		11.16	□□□□□ -0.62
SRRM1-223	ENST00000600523	TGIF2LY	Q8IUE0	185 aa		11.16	□□□□□ -0.62
SRRM1-223	ENST00000600523	ST7L	Q8TDW4	575 aa		11.16	□□□□□ -0.62
SRRM1-223	ENST00000600523	RNF133	Q8WVZ7	376 aa		11.16	□□□□□ -0.62
SRRM1-223	ENST00000600523	DIRC2	Q96SL1	478 aa		11.16	□□□□□ -0.62
SRRM1-223	ENST00000600523	SLC29A1	Q99808	456 aa		11.16	□□□□□ -0.62
SRRM1-223	ENST00000600523	RHNO1	Q9BSD3	238 aa		11.16	□□□□□ -0.62
SRRM1-223	ENST00000600523	VCX3B	Q9H321	246 aa		11.16	□□□□□ -0.62
SRRM1-223	ENST00000600523	OPA3	Q9H6K4	179 aa		11.16	□□□□□ -0.62
SRRM1-223	ENST00000600523	PNRC2	Q9NPJ4	139 aa	Known RBP	11.16	□□□□□ -0.62
SRRM1-223	ENST00000600523	DECR2	Q9NUI1	292 aa		11.16	□□□□□ -0.62
SRRM1-223	ENST00000600523	CLN6	Q9NWW5	311 aa		11.16	□□□□□ -0.62
SRRM1-223	ENST00000600523	HAO2	Q9NYQ3	351 aa		11.16	□□□□□ -0.62
SRRM1-223	ENST00000600523	STARD10	Q9Y365	291 aa		11.16	□□□□□ -0.62
SRRM1-223	ENST00000600523	PLCE1	Q9P212	2302 aa		11.16	□□□□□ -0.62
SRRM1-223	ENST00000600523	CCDC168	Q8NDH2	2452 aa		11.15	□□□□□ -0.62
SRRM1-223	ENST00000600523	TMEM129	A0AVI4	362 aa		11.15	□□□□□ -0.62
SRRM1-223	ENST00000600523		M0R129	80 aa		11.15	□□□□□ -0.62
SRRM1-223	ENST00000600523	CLPTM1	O96005	669 aa		11.15	□□□□□ -0.62
SRRM1-223	ENST00000600523	ANXA2	P07355	339 aa	Known RBP	11.15	□□□□□ -0.62
SRRM1-223	ENST00000600523	CFL1	P23528	166 aa	Known RBP	11.15	□□□□□ -0.62
SRRM1-223	ENST00000600523	HTR1F	P30939	366 aa		11.15	□□□□□ -0.62
SRRM1-223	ENST00000600523	CX3CR1	P49238	355 aa		11.15	□□□□□ -0.62
SRRM1-223	ENST00000600523	ZNF81	P51508	661 aa		11.15	□□□□□ -0.62
SRRM1-223	ENST00000600523	PRKX	P51817	358 aa		11.15	□□□□□ -0.62
SRRM1-223	ENST00000600523	SNRPG	P62308	76 aa	Known RBP	11.15	□□□□□ -0.62
SRRM1-223	ENST00000600523	EFNB1	P98172	346 aa		11.15	□□□□□ -0.62
SRRM1-223	ENST00000600523	SLC34A1	Q06495	639 aa		11.15	□□□□□ -0.62
SRRM1-223	ENST00000600523	CARTPT	Q16568	116 aa		11.15	□□□□□ -0.62
SRRM1-223	ENST00000600523	FAM209A	Q5JX71	171 aa		11.15	□□□□□ -0.62
SRRM1-223	ENST00000600523	TTC23	Q5W5X9	447 aa		11.15	□□□□□ -0.62
SRRM1-223	ENST00000600523	PGAP1	Q75T13	922 aa		11.15	□□□□□ -0.62
SRRM1-223	ENST00000600523	MRPL21	Q7Z2W9	205 aa	Known RBP	11.15	□□□□□ -0.62
SRRM1-223	ENST00000600523	LRP11	Q86VZ4	500 aa		11.15	□□□□□ -0.62
SRRM1-223	ENST00000600523	ZNF540	Q8NDQ6	660 aa		11.15	□□□□□ -0.62
SRRM1-223	ENST00000600523	OR52H1	Q8NGJ2	320 aa		11.15	□□□□□ -0.62
SRRM1-223	ENST00000600523	CMBL	Q96DG6	245 aa		11.15	□□□□□ -0.62
SRRM1-223	ENST00000600523	MRPL48	Q96GC5	212 aa	Known RBP	11.15	□□□□□ -0.62
SRRM1-223	ENST00000600523		Q96MF0	132 aa		11.15	□□□□□ -0.62
SRRM1-223	ENST00000600523	ZNF582	Q96NG8	517 aa	Predicted RBP	11.15	□□□□□ -0.62
SRRM1-223	ENST00000600523	SORCS2	Q96PQ0	1159 aa		11.15	□□□□□ -0.62
SRRM1-223	ENST00000600523	C1QTNF5	Q9BXJ0	243 aa		11.15	□□□□□ -0.62
SRRM1-223	ENST00000600523	EGLN1	Q9GZT9	426 aa		11.15	□□□□□ -0.62
SRRM1-223	ENST00000600523	FAM118A	Q9NWS6	357 aa		11.15	□□□□□ -0.62
SRRM1-223	ENST00000600523	PTTG3P	Q9NZH4	202 aa		11.15	□□□□□ -0.62
SRRM1-223	ENST00000600523	DNAJC27	Q9NZQ0	273 aa		11.15	□□□□□ -0.62
SRRM1-223	ENST00000600523	ZDHHC8	Q9ULC8	765 aa		11.15	□□□□□ -0.62
SRRM1-223	ENST00000600523	NOP16	Q9Y3C1	178 aa	Known RBP	11.15	□□□□□ -0.62
SRRM1-223	ENST00000600523	N6AMT1	Q9Y5N5	214 aa		11.15	□□□□□ -0.62
SRRM1-223	ENST00000600523	PDZD2	O15018	2839 aa		11.15	□□□□□ -0.62
SRRM1-223	ENST00000600523	TEX15	Q9BXT5	2789 aa		11.15	□□□□□ -0.63
SRRM1-223	ENST00000600523	LRBA	P50851	2863 aa		11.14	□□□□□ -0.63
SRRM1-223	ENST00000600523	CCDC182	A6NF36	153 aa		11.14	□□□□□ -0.63
SRRM1-223	ENST00000600523	C17orf100	A8MU93	164 aa		11.14	□□□□□ -0.63
SRRM1-223	ENST00000600523	TBX1	O43435	398 aa		11.14	□□□□□ -0.63
SRRM1-223	ENST00000600523	XRCC2	O43543	280 aa		11.14	□□□□□ -0.63
SRRM1-223	ENST00000600523	ZNF254	O75437	659 aa		11.14	□□□□□ -0.63
SRRM1-223	ENST00000600523	NAT2	P11245	290 aa		11.14	□□□□□ -0.63
SRRM1-223	ENST00000600523	ALOX5AP	P20292	161 aa		11.14	□□□□□ -0.63
SRRM1-223	ENST00000600523	PEX2	P28328	305 aa		11.14	□□□□□ -0.63
SRRM1-223	ENST00000600523	OTX1	P32242	354 aa	Predicted RBP	11.14	□□□□□ -0.63
SRRM1-223	ENST00000600523	PDLIM4	P50479	330 aa		11.14	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms