RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 TMEM154Q6P9G4 183 aa10.62□□□□□ -0.71
UPF1-203ENST00000594504 ZNF771Q7L3S4 317 aaPredicted RBP10.62□□□□□ -0.71
UPF1-203ENST00000594504 SEMA6DQ8NFY4 1073 aa10.62□□□□□ -0.71
UPF1-203ENST00000594504 OR9Q1Q8NGQ5 310 aa10.62□□□□□ -0.71
UPF1-203ENST00000594504 OR1J1Q8NGS3 322 aa10.62□□□□□ -0.71
UPF1-203ENST00000594504 OR51F2Q8NH61 342 aa10.62□□□□□ -0.71
UPF1-203ENST00000594504 POM121L2Q96KW2 1035 aa10.62□□□□□ -0.71
UPF1-203ENST00000594504 S100A14Q9HCY8 104 aa10.62□□□□□ -0.71
UPF1-203ENST00000594504 KCNG2Q9UJ96 466 aa10.62□□□□□ -0.71
UPF1-203ENST00000594504 NDRG4Q9ULP0 352 aaKnown RBP10.62□□□□□ -0.71
UPF1-203ENST00000594504 GRIP1Q9Y3R0 1128 aa10.62□□□□□ -0.71
UPF1-203ENST00000594504 LOC100509620A0A075B734 347 aa10.61□□□□□ -0.71
UPF1-203ENST00000594504 LOC105371242A0A075B767 164 aa10.61□□□□□ -0.71
UPF1-203ENST00000594504 C5orf49A4QMS7 147 aa10.61□□□□□ -0.71
UPF1-203ENST00000594504 SAC3D1A6NKF1 404 aa10.61□□□□□ -0.71
UPF1-203ENST00000594504 SURF4O15260 269 aa10.61□□□□□ -0.71
UPF1-203ENST00000594504 TPD52L2O43399 206 aaKnown RBP10.61□□□□□ -0.71
UPF1-203ENST00000594504 PLPP2O43688 288 aa10.61□□□□□ -0.71
UPF1-203ENST00000594504 DOK2O60496 412 aa10.61□□□□□ -0.71
UPF1-203ENST00000594504 MITFO75030 526 aaPredicted RBP10.61□□□□□ -0.71
UPF1-203ENST00000594504 SPI1P17947 270 aa10.61□□□□□ -0.71
UPF1-203ENST00000594504 CRYBB2P43320 205 aa10.61□□□□□ -0.71
UPF1-203ENST00000594504 RAD52P43351 418 aa10.61□□□□□ -0.71
UPF1-203ENST00000594504 BLVRAP53004 296 aa10.61□□□□□ -0.71
UPF1-203ENST00000594504 SELENOVP59797 346 aa10.61□□□□□ -0.71
UPF1-203ENST00000594504 MRPS11P82912 194 aaKnown RBP10.61□□□□□ -0.71
UPF1-203ENST00000594504 DBPQ10586 325 aaPredicted RBP10.61□□□□□ -0.71
UPF1-203ENST00000594504 SPATA46Q5T0L3 261 aa10.61□□□□□ -0.71
UPF1-203ENST00000594504 OTPQ5XKR4 325 aa10.61□□□□□ -0.71
UPF1-203ENST00000594504 USP51Q70EK9 711 aa10.61□□□□□ -0.71
UPF1-203ENST00000594504 VASH1Q7L8A9 365 aaPredicted RBP10.61□□□□□ -0.71
UPF1-203ENST00000594504 ZSCAN2Q7Z7L9 614 aaPredicted RBP10.61□□□□□ -0.71
UPF1-203ENST00000594504 GJC3Q8NFK1 279 aa10.61□□□□□ -0.71
UPF1-203ENST00000594504 PLEKHA8Q96JA3 519 aa10.61□□□□□ -0.71
UPF1-203ENST00000594504 RBM4BQ9BQ04 359 aaKnown RBP10.61□□□□□ -0.71
UPF1-203ENST00000594504 PRRG3Q9BZD7 231 aa10.61□□□□□ -0.71
UPF1-203ENST00000594504 ZNF665Q9H7R5 613 aa10.61□□□□□ -0.71
UPF1-203ENST00000594504 G6PC2Q9NQR9 355 aa10.61□□□□□ -0.71
UPF1-203ENST00000594504 PLEK2Q9NYT0 353 aa10.61□□□□□ -0.71
UPF1-203ENST00000594504 ATPIF1Q9UII2 106 aa10.61□□□□□ -0.71
UPF1-203ENST00000594504 LHFPL6Q9Y693 200 aa10.61□□□□□ -0.71
UPF1-203ENST00000594504 MXRA5Q9NR99 2828 aa10.61□□□□□ -0.71
UPF1-203ENST00000594504 IGHV1-69-2A0A0G2JMI3 117 aa10.6□□□□□ -0.71
UPF1-203ENST00000594504 FAM183AA6NL82 134 aa10.6□□□□□ -0.71
UPF1-203ENST00000594504 PRR23D1E9PI22 279 aaPredicted RBP10.6□□□□□ -0.71
UPF1-203ENST00000594504 RER1O15258 196 aa10.6□□□□□ -0.71
UPF1-203ENST00000594504 SPRY3O43610 288 aa10.6□□□□□ -0.71
UPF1-203ENST00000594504 GYPBP06028 91 aa10.6□□□□□ -0.71
UPF1-203ENST00000594504 PRR23D2P0DMB1 279 aaPredicted RBP10.6□□□□□ -0.71
UPF1-203ENST00000594504 ZNF823P16415 610 aa10.6□□□□□ -0.71
UPF1-203ENST00000594504 ADRA2CP18825 462 aa10.6□□□□□ -0.71
UPF1-203ENST00000594504 FMO3P31513 532 aa10.6□□□□□ -0.71
UPF1-203ENST00000594504 MPV17P39210 176 aa10.6□□□□□ -0.71
UPF1-203ENST00000594504 WNT5AP41221 380 aa10.6□□□□□ -0.71
UPF1-203ENST00000594504 HTR5AP47898 357 aa10.6□□□□□ -0.71
UPF1-203ENST00000594504 HIST1H3AP68431 136 aa10.6□□□□□ -0.71
UPF1-203ENST00000594504 PTGES3Q15185 160 aaKnown RBP10.6□□□□□ -0.71
UPF1-203ENST00000594504 SPRNQ5BIV9 151 aa10.6□□□□□ -0.71
UPF1-203ENST00000594504 HIST2H3PS2Q5TEC6 136 aa10.6□□□□□ -0.71
UPF1-203ENST00000594504 TMEM236Q5W0B7 351 aa10.6□□□□□ -0.71
UPF1-203ENST00000594504 UNQ6126/PRO20091Q6UXV3 157 aa10.6□□□□□ -0.71
UPF1-203ENST00000594504 HIST2H3AQ71DI3 136 aa10.6□□□□□ -0.71
UPF1-203ENST00000594504 ZNF101Q8IZC7 436 aa10.6□□□□□ -0.71
UPF1-203ENST00000594504 OR51L1Q8NGJ5 315 aa10.6□□□□□ -0.71
UPF1-203ENST00000594504 OR2AJ1Q8NGZ0 328 aa10.6□□□□□ -0.71
UPF1-203ENST00000594504 SNX33Q8WV41 574 aa10.6□□□□□ -0.71
UPF1-203ENST00000594504 STMN2Q93045 179 aa10.6□□□□□ -0.71
UPF1-203ENST00000594504 CIB1Q99828 191 aa10.6□□□□□ -0.71
UPF1-203ENST00000594504 CDADC1Q9BWV3 514 aa10.6□□□□□ -0.71
UPF1-203ENST00000594504 TMPRSS13Q9BYE2 586 aa10.6□□□□□ -0.71
UPF1-203ENST00000594504 BCL2L14Q9BZR8 327 aa10.6□□□□□ -0.71
UPF1-203ENST00000594504 HDHD2Q9H0R4 259 aa10.6□□□□□ -0.71
UPF1-203ENST00000594504 DECR2Q9NUI1 292 aa10.6□□□□□ -0.71
UPF1-203ENST00000594504 MRPL22Q9NWU5 206 aaKnown RBP10.6□□□□□ -0.71
UPF1-203ENST00000594504 SLCO1C1Q9NYB5 712 aa10.6□□□□□ -0.71
UPF1-203ENST00000594504 EIF3KQ9UBQ5 218 aaKnown RBP10.6□□□□□ -0.71
UPF1-203ENST00000594504 CYB5R1Q9UHQ9 305 aa10.6□□□□□ -0.71
UPF1-203ENST00000594504 GPR160Q9UJ42 338 aa10.6□□□□□ -0.71
UPF1-203ENST00000594504 PCDHB10Q9UN67 800 aa10.6□□□□□ -0.71
UPF1-203ENST00000594504 WIPI2Q9Y4P8 454 aa10.6□□□□□ -0.71
UPF1-203ENST00000594504 DYSFO75923 2080 aa10.6□□□□□ -0.71
UPF1-203ENST00000594504 ARHGAP32A7KAX9 2087 aa10.59□□□□□ -0.71
UPF1-203ENST00000594504 TRAV20A0A0B4J274 112 aa10.59□□□□□ -0.71
UPF1-203ENST00000594504 OR6C6A6NF89 314 aa10.59□□□□□ -0.71
UPF1-203ENST00000594504 TVP23AA6NH52 213 aa10.59□□□□□ -0.71
UPF1-203ENST00000594504 ICMTO60725 284 aa10.59□□□□□ -0.71
UPF1-203ENST00000594504 PNPP00491 289 aa10.59□□□□□ -0.71
UPF1-203ENST00000594504 IGHV1-46P01743 117 aa10.59□□□□□ -0.71
UPF1-203ENST00000594504 CLUP10909 449 aa10.59□□□□□ -0.71
UPF1-203ENST00000594504 GGT2P36268 569 aa10.59□□□□□ -0.71
UPF1-203ENST00000594504 SNAPC1Q16533 368 aa10.59□□□□□ -0.71
UPF1-203ENST00000594504 CCDC92Q53HC0 331 aaPredicted RBP10.59□□□□□ -0.71
UPF1-203ENST00000594504 SLC18B1Q6NT16 456 aa10.59□□□□□ -0.71
UPF1-203ENST00000594504 CORO6Q6QEF8 472 aa10.59□□□□□ -0.71
UPF1-203ENST00000594504 ARL9Q6T311 187 aa10.59□□□□□ -0.71
UPF1-203ENST00000594504 PEG10Q86TG7 708 aaKnown RBP10.59□□□□□ -0.71
UPF1-203ENST00000594504 C1orf174Q8IYL3 243 aa10.59□□□□□ -0.71
UPF1-203ENST00000594504 PQLC1Q8N2U9 271 aa10.59□□□□□ -0.71
UPF1-203ENST00000594504 OR6K6Q8NGW6 343 aa10.59□□□□□ -0.71
UPF1-203ENST00000594504 OR1F12Q8NHA8 337 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms